FC931546

Overview
NameFC931546
Unique NameFC931546
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9385 contig Ccv1_Contig9385:73..788. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931546 vs. ExPASy Swiss-Prot
Match: SMG1_DROME (Serine/threonine-protein kinase Smg1 OS=Drosophila melanogaster GN=Smg1 PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 2.126e-33
Identity = 66/151 (43.71%), Postives = 104/151 (68.87%), Query Frame = 3
Query:   21 PLIAKVEVFEYALQNTEGNDLARVLWLKSRTSEIWLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINW 473
            P+   ++V +   Q T  + LAR LW ++  +  W +    + R ++VMSM+GY++GLGDRH  N++++  SG I+HID+  CFE      + PEKVPFRLT+ LV+AM ++GIEG FR  CE V++V+R  R++++ ++EAFV+DPL++W
Sbjct: 2045 PISVLLQVLDELSQETPNDLLARELWCQAGNAAEWRQSVRRFVRCMSVMSMIGYVIGLGDRHLDNVLINLGSGDIVHIDYNVCFEKGRTL-RIPEKVPFRLTQNLVQAMGITGIEGPFRLGCEYVLKVMRKERETLLTLLEAFVYDPLVDW 2194          
BLAST of FC931546 vs. ExPASy Swiss-Prot
Match: SMG1_MOUSE (Serine/threonine-protein kinase SMG1 OS=Mus musculus GN=Smg1 PE=1 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 8.079e-33
Identity = 65/151 (43.05%), Postives = 101/151 (66.89%), Query Frame = 3
Query:   21 PLIAKVEVFEYALQNTEGNDLARVLWLKSRTSEIWLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINW 473
            PL     V E  ++ T  N LA+ LW    T + W     +Y RS AVMSMVGY++GLGDRH  N+++   +G+++HID+  CFE   +  + PEKVPFR+T+ +  A+ V+G+EG FR +CE V+ ++R  R++++ ++EAFV+DPL++W
Sbjct: 2274 PLHVMKAVLEELMEATPPNLLAKELWSSCTTPDEWWRVTQSYARSTAVMSMVGYIIGLGDRHLDNVLIDMTTGEVVHIDYNVCFEKGKSL-RVPEKVPFRMTQNIETALGVTGVEGVFRLSCEQVLHIMRRGRETLLTLLEAFVYDPLVDW 2423          
BLAST of FC931546 vs. ExPASy Swiss-Prot
Match: SMG1_HUMAN (Serine/threonine-protein kinase SMG1 OS=Homo sapiens GN=SMG1 PE=1 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 8.079e-33
Identity = 65/151 (43.05%), Postives = 101/151 (66.89%), Query Frame = 3
Query:   21 PLIAKVEVFEYALQNTEGNDLARVLWLKSRTSEIWLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINW 473
            PL     V E  ++ T  N LA+ LW    T + W     +Y RS AVMSMVGY++GLGDRH  N+++   +G+++HID+  CFE   +  + PEKVPFR+T+ +  A+ V+G+EG FR +CE V+ ++R  R++++ ++EAFV+DPL++W
Sbjct: 2272 PLHVMKAVLEELMEATPPNLLAKELWSSCTTPDEWWRVTQSYARSTAVMSMVGYIIGLGDRHLDNVLIDMTTGEVVHIDYNVCFEKGKSL-RVPEKVPFRMTQNIETALGVTGVEGVFRLSCEQVLHIMRRGRETLLTLLEAFVYDPLVDW 2421          
BLAST of FC931546 vs. ExPASy Swiss-Prot
Match: RAD3_SCHPO (Protein kinase rad3 OS=Schizosaccharomyces pombe GN=rad3 PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 5.789e-31
Identity = 70/173 (40.46%), Postives = 103/173 (59.54%), Query Frame = 3
Query:  123 WLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINWRLFNFNEVPQMSVFANTHVPPVVNA-----EETAPNRELPQPQRGARERELLQAVN 626
            W+  R NY R+LAVMS+VGY+LGLGDRH  N++   ++G+ +H+DF   F+  +  EK PEKVPFRLT  +V AM  +G EG FR   E  M++LRSN+D++M+++E+F+HDPL+ W     N     S + N     V++      +   P   +P    G  +  +  AVN
Sbjct: 2205 WVTSRQNYCRTLAVMSIVGYVLGLGDRHGENILFDEFTGEAIHVDFNCLFDKGLTFEK-PEKVPFRLTHNMVDAMGPTGYEGGFRKASEITMRLLRSNQDTLMSVLESFLHDPLVEW-----NRKKSSSKYPNNEANEVLDIIRKKFQGFMPGETIPLSIEGQIQELIKSAVN 2371          
BLAST of FC931546 vs. ExPASy Swiss-Prot
Match: SMG1_DICDI (Probable serine/threonine-protein kinase smg1 OS=Dictyostelium discoideum GN=smg1 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.092e-29
Identity = 60/150 (40.00%), Postives = 98/150 (65.33%), Query Frame = 3
Query:   36 VEVFEYALQNTEGNDLARVLWLKSRTSEIWLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINWRLFN 485
            ++V    +Q T    L R LW  S +S     +  +Y+RSLA+MS++GY++GLGDRH  N++L   +G+I+HID+  CFE      K PE+VPFR+T++   A+ ++G++G FR T   +M +LR N+D ++ ++E F++DPL +W+  N
Sbjct: 2008 IQVLNELMQETPKWILQRELWFSSSSSSELFLKTQSYSRSLALMSVIGYMIGLGDRHLDNILLDLKTGEIVHIDYNICFEKGAEL-KIPERVPFRMTQIFEYALGLTGVQGTFRETSIQIMHLLRKNKDILLNLLETFIYDPLFDWKHSN 2156          
BLAST of FC931546 vs. ExPASy Swiss-Prot
Match: ATM_ARATH (Serine/threonine-protein kinase ATM OS=Arabidopsis thaliana GN=ATM PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.577e-28
Identity = 54/119 (45.38%), Postives = 84/119 (70.59%), Query Frame = 3
Query:  123 WLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINWRL 479
            W  +R  YTRS+A  SMVGY++GLGDRH  N+++ + + +++HID G  FE  +   K PE+VPFRLTR ++  M ++G+EG FR  CE  + V+R+N+++++ ++E F+HDPL  W L
Sbjct: 3656 WFVKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLML-KTPERVPFRLTRDIIDGMGITGVEGVFRRCCEETLSVMRTNKEALLTIVEVFIHDPLYKWAL 3773          
BLAST of FC931546 vs. ExPASy Swiss-Prot
Match: ATM_HUMAN (Serine-protein kinase ATM OS=Homo sapiens GN=ATM PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 3.512e-28
Identity = 66/180 (36.67%), Postives = 106/180 (58.89%), Query Frame = 3
Query:  120 IWLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINWRLFNFNEV-PQMSVFANTHVPPVVNAEETAPNR---ELPQPQRGARERELLQAVNQLGDASE 647
            IW E+R  YTRS+A  S+VGY+LGLGDRH  N++++  S +++HID G  FE        PE VPFRLTR +V  M ++G+EG FR  CE  M+V+R+++++++ ++E  ++DPL +W +     +  Q      T + P +NA++    R   ++ Q      ER L++   +L    E
Sbjct: 2844 IWFEKRLAYTRSVATSSIVGYILGLGDRHVQNILINEQSAELVHIDLGVAFEQGKILPT-PETVPFRLTRDIVDGMGITGVEGVFRRCCEKTMEVMRNSQETLLTIVEVLLYDPLFDWTMNPLKALYLQQRPEDETELHPTLNADDQECKRNLSDIDQSFNKVAERVLMRLQEKLKGVEE 3022          
BLAST of FC931546 vs. ExPASy Swiss-Prot
Match: SMG1_CAEEL (Serine/threonine-protein kinase smg-1 OS=Caenorhabditis elegans GN=smg-1 PE=1 SV=3)

HSP 1 Score: 124.02 bits (310), Expect = 7.825e-28
Identity = 62/145 (42.76%), Postives = 90/145 (62.07%), Query Frame = 3
Query:   39 EVFEYALQNTEGNDLARVLWLKSRTSEIWLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINW 473
            EVFE     T  + ++R LW+++  +  W      Y+RSLAVMSMVG +LGLGDRH  NL++    G ++HID+  CF+   N  + PE VPFRLTR +  A+  S + G FR +C +V+  LRS    +  +++AFV DPL++W
Sbjct: 1913 EVFESLTAKTPTDLISRELWMRANDATTWWSVTKRYSRSLAVMSMVGSVLGLGDRHLDNLLVDLKWGHVVHIDYNICFDKGKNL-RIPETVPFRLTRNMRHALGPSEMYGTFRESCVHVLSTLRSGHQVLTMLLDAFVFDPLVDW 2056          
BLAST of FC931546 vs. ExPASy Swiss-Prot
Match: ATM_MOUSE (Serine-protein kinase ATM OS=Mus musculus GN=Atm PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.072e-27
Identity = 66/196 (33.67%), Postives = 109/196 (55.61%), Query Frame = 3
Query:  120 IWLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINWRLFNFNEVPQMSVFANTHVPPVVNAEETAPNRELPQPQRGARERELLQAVNQLGDASEVLNGRAVVVMARMSNKLQDV 707
            +W E+R  YTRS+A  S+VGY+LGLGDRH  N++++  S +++HID G  FE        PE VPFRL+R +V  M ++G+EG FR  CE  M+V+RS++++++ ++E  ++DPL +W +   N +  + +         +++   A ++E  Q                L D  +  N  A  V+ R+  KL+ V
Sbjct: 2854 VWFEKRLAYTRSVATSSIVGYILGLGDRHVQNILINEQSAELVHIDLGVAFEQGKILPT-PETVPFRLSRDIVDGMGITGVEGVFRRCCEKTMEVMRSSQETLLTIVEVLLYDPLFDWTM---NPLKALYLQQRPEDESDLHSTPNADDQECKQ---------------SLSDTDQSFNKVAERVLMRLQEKLKGV 3030          
BLAST of FC931546 vs. ExPASy Swiss-Prot
Match: ATM_PIG (Serine-protein kinase ATM OS=Sus scrofa GN=ATM PE=3 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 6.624e-27
Identity = 53/120 (44.17%), Postives = 84/120 (70.00%), Query Frame = 3
Query:  120 IWLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINWRL 479
            +W ERR  YT+S+A  S+VGY+LGLGDRH  N++++  S +++HID G  FE        PE VPFRLTR +V  M ++G+EG FR  CE  M+V+R+++++++ ++E  ++DPL +W +
Sbjct: 2845 VWFERRLAYTQSVATSSIVGYILGLGDRHVQNILINEQSAELVHIDLGVAFEQGKILPT-PETVPFRLTRDIVDGMGITGVEGVFRRCCEKTMEVMRNSQETLLTIVEVLLYDPLFDWTM 2963          
The following BLAST results are available for this feature:
BLAST of FC931546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
SMG1_DROME2.126e-3343.71Serine/threonine-protein kinase Smg1 OS=Drosophila... [more]
SMG1_MOUSE8.079e-3343.05Serine/threonine-protein kinase SMG1 OS=Mus muscul... [more]
SMG1_HUMAN8.079e-3343.05Serine/threonine-protein kinase SMG1 OS=Homo sapie... [more]
RAD3_SCHPO5.789e-3140.46Protein kinase rad3 OS=Schizosaccharomyces pombe G... [more]
SMG1_DICDI1.092e-2940.00Probable serine/threonine-protein kinase smg1 OS=D... [more]
ATM_ARATH1.577e-2845.38Serine/threonine-protein kinase ATM OS=Arabidopsis... [more]
ATM_HUMAN3.512e-2836.67Serine-protein kinase ATM OS=Homo sapiens GN=ATM P... [more]
SMG1_CAEEL7.825e-2842.76Serine/threonine-protein kinase smg-1 OS=Caenorhab... [more]
ATM_MOUSE5.072e-2733.67Serine-protein kinase ATM OS=Mus musculus GN=Atm P... [more]
ATM_PIG6.624e-2744.17Serine-protein kinase ATM OS=Sus scrofa GN=ATM PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34106C09EF PostHarvP1 Citrus clementina cDNA clone C34106C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931546 ID=FC931546; Name=FC931546; organism=Citrus clementina; type=EST; length=716bp
CACCAGATTATGACCATTTGCCTCTCATAGCCAAAGTGGAAGTTTTTGAA
TATGCTCTACAAAATACTGAAGGGAATGATCTGGCCAGGGTGCTTTGGTT
AAAAAGCCGTACTTCTGAAATATGGCTAGAGAGGAGGACGAACTATACCA
GAAGTTTAGCAGTGATGAGCATGGTTGGATACCTTCTTGGTTTAGGGGAT
CGGCACCCAAGTAATCTTATGCTGCACCGCTATAGTGGGAAAATTTTACA
CATAGATTTTGGGGACTGCTTTGAAGCTTCAATGAACCGGGAGAAGTTCC
CTGAAAAGGTTCCTTTTCGCTTGACTAGAATGCTTGTTAAAGCTATGGAG
GTTAGTGGTATTGAGGGCAACTTCCGTTCAACATGCGAAAATGTGATGCA
AGTTCTGCGCTCAAATAGGGATAGTGTTATGGCTATGATGGAGGCCTTTG
TTCATGATCCTCTCATCAATTGGCGTCTTTTCAATTTTAATGAAGTACCG
CAAATGTCAGTGTTTGCAAATACTCATGTCCCTCCTGTTGTGAATGCCGA
AGAAACTGCTCCAAATAGAGAACTTCCTCAACCACAACGGGGTGCTCGTG
AAAGGGAGCTTCTTCAGGCTGTTAATCAACTTGGTGATGCTAGTGAGGTT
TTGAATGGGCGTGCTGTGGTTGTCATGGCTCGGATGAGTAATAAGCTACA
GGACGTGATTCTCATC
back to top