FC931548

Overview
NameFC931548
Unique NameFC931548
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931548 vs. ExPASy Swiss-Prot
Match: TCMO_MEDSA (Trans-cinnamate 4-monooxygenase OS=Medicago sativa GN=CYP73A3 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.702e-12
Identity = 40/121 (33.06%), Postives = 68/121 (56.20%), Query Frame = 1
Query:  238 PVIGHLHLLGRFPLHRVLGDMADKYGPIFTIRMGVHRALVVSNWEMAKECLTTHDRVFASRPKALVAEILGFNFSMFGFSPYGPHWRQIRKIATLELLSNHRLEKLKHVREGEVKTCLKEL 600
            P+ G+   +G    HR L D A ++G IF +RMG    +VVS+ E+AKE L T    F SR + +V +I         F+ YG HWR++R+I T+   +N  +++ ++  E E ++ + ++
Sbjct:   41 PIFGYWLQVGDDLNHRNLTDYAKRFGEIFLLRMGQRNLVVVSSPELAKEVLHTQCVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRYGWESEAESVVNDV 161          
BLAST of FC931548 vs. ExPASy Swiss-Prot
Match: TCMO_GLYEC (Trans-cinnamate 4-monooxygenase OS=Glycyrrhiza echinata GN=CYP73A14 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.609e-12
Identity = 40/121 (33.06%), Postives = 67/121 (55.37%), Query Frame = 1
Query:  238 PVIGHLHLLGRFPLHRVLGDMADKYGPIFTIRMGVHRALVVSNWEMAKECLTTHDRVFASRPKALVAEILGFNFSMFGFSPYGPHWRQIRKIATLELLSNHRLEKLKHVREGEVKTCLKEL 600
            P+ G+   +G    HR L D+A ++G IF +RMG    +VVS+ E+AKE L T    F SR + +V +I         F+ YG HWR++R+I T+   +N  +++ +   E E  + + ++
Sbjct:   41 PIFGNWLQVGDDLNHRNLTDLAKRFGDIFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRFGWESEAASVVDDV 161          
BLAST of FC931548 vs. ExPASy Swiss-Prot
Match: TCMO_POPKI (Trans-cinnamate 4-monooxygenase OS=Populus kitakamiensis GN=CYP73A16 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 40/121 (33.06%), Postives = 68/121 (56.20%), Query Frame = 1
Query:  238 PVIGHLHLLGRFPLHRVLGDMADKYGPIFTIRMGVHRALVVSNWEMAKECLTTHDRVFASRPKALVAEILGFNFSMFGFSPYGPHWRQIRKIATLELLSNHRLEKLKHVREGEVKTCLKEL 600
            PV G+   +G    HR L D+A K+G IF +RMG    +VVS+ +++KE L T    F SR + +V +I         F+ YG HWR++R+I T+   +N  +++ ++  E E    ++++
Sbjct:   41 PVFGNWLQVGDDLNHRNLTDLAKKFGDIFLLRMGQRNLVVVSSPDLSKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRYGWEEEAAQVVEDV 161          
BLAST of FC931548 vs. ExPASy Swiss-Prot
Match: TCMO_PHAAU (Trans-cinnamate 4-monooxygenase OS=Phaseolus aureus GN=CYP73A2 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 39/121 (32.23%), Postives = 66/121 (54.55%), Query Frame = 1
Query:  238 PVIGHLHLLGRFPLHRVLGDMADKYGPIFTIRMGVHRALVVSNWEMAKECLTTHDRVFASRPKALVAEILGFNFSMFGFSPYGPHWRQIRKIATLELLSNHRLEKLKHVREGEVKTCLKEL 600
            P+ G+   +G    HR L  +A ++G IF +RMG    +VVS+ ++AKE L T    F SR + +V +I         F+ YG HWR++R+I T+   +N  +++ +H  E E    + ++
Sbjct:   41 PIFGNWLQVGDDLNHRNLTQLAKRFGDIFLLRMGQRNLVVVSSPDLAKEVLHTQGVEFGSRTRNVVFDIFTGEGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRHGWEAEAAAVVDDV 161          
BLAST of FC931548 vs. ExPASy Swiss-Prot
Match: C77A3_SOYBN (Cytochrome P450 77A3 OS=Glycine max GN=CYP77A3 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.027e-11
Identity = 39/147 (26.53%), Postives = 72/147 (48.98%), Query Frame = 1
Query:  193 SNKKKRGPPEAGGAWPVIGHLHLLGRF--PLHRVLGDMADKYGPIFTIRMGVHRALVVSNWEMAKECLTTHDRVFASR-PKALVAEILGFNFSMFGFSPYGPHWRQIRKIATLELLSNHRLEKLKHVREGEVKTCLKELYDFWDRTN 624
            S  KK   P     WP++G+L  + R   P    + D+  KYG IFT++MG    +++++ ++  E +      +A+R P+     I   N      + YGP W+ +R+     +LS+ RL++ + VR+  +   +  L D  ++ N
Sbjct:   30 SKSKKFNLPPGPPGWPIVGNLFQVARSGKPFFEYVNDVRLKYGSIFTLKMGTRTMIILTDAKLVHEAMIQKGATYATRPPENPTRTIFSENKFTVNAATYGPVWKSLRRNMVQNMLSSTRLKEFRSVRDNAMDKLINRLKDEAEKNN 176          
BLAST of FC931548 vs. ExPASy Swiss-Prot
Match: C75AK_ARATH (Cytochrome P450 705A20 OS=Arabidopsis thaliana GN=CYP705A20 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.027e-11
Identity = 38/123 (30.89%), Postives = 65/123 (52.85%), Query Frame = 1
Query:  238 PVIGHLHLLGRFPLHRVLGDMADKYGPIFTIRMGVHRALVVSNWEMAKECLTTHDRVFASRPKALVAEILGFNFSMFGFSPYGPHWRQIRKIATLELLSNHRLEKLKHVREGEVKTCLKELYD 606
            P+IGHLH L     H+ L  ++ KYGP+  + +     ++VS+  +A E    HD   +SR    + E L    S+F  +PYG +W+ ++K+   +LL    LE+ + +R  E++   + L D
Sbjct:   47 PIIGHLHHLLSSLAHKSLQQLSSKYGPLLHLSIFNFPVVLVSSASVAYEIFKAHDLNISSRDNPPINESLLVGSSVFVGAPYGDYWKFMKKLLVTKLLGPQALERSRSIRADELERFYRSLLD 169          
BLAST of FC931548 vs. ExPASy Swiss-Prot
Match: TCMO_ZINEL (Trans-cinnamate 4-monooxygenase OS=Zinnia elegans GN=CYP73A12 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 40/121 (33.06%), Postives = 65/121 (53.72%), Query Frame = 1
Query:  238 PVIGHLHLLGRFPLHRVLGDMADKYGPIFTIRMGVHRALVVSNWEMAKECLTTHDRVFASRPKALVAEILGFNFSMFGFSPYGPHWRQIRKIATLELLSNHRLEKLKHVREGEVKTCLKEL 600
            P+ G+   +G    HR L D+A K+G IF +RMG    +VVS+  +AKE L T    F SR + +V +I         F+ YG HWR++R+I T+   +N  +++ +   E E    + ++
Sbjct:   41 PIFGNWLQVGDDLNHRNLTDLAKKFGEIFLLRMGQRNLVVVSSPNLAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRTGWEAEAAAVVDDV 161          
BLAST of FC931548 vs. ExPASy Swiss-Prot
Match: TCMO_POPTM (Trans-cinnamate 4-monooxygenase OS=Populus tremuloides GN=CYP73A13 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 40/121 (33.06%), Postives = 67/121 (55.37%), Query Frame = 1
Query:  238 PVIGHLHLLGRFPLHRVLGDMADKYGPIFTIRMGVHRALVVSNWEMAKECLTTHDRVFASRPKALVAEILGFNFSMFGFSPYGPHWRQIRKIATLELLSNHRLEKLKHVREGEVKTCLKEL 600
            PV G+   +G    HR L D+A K+G I  +RMG    +VVS+ E++KE L T    F SR + +V +I         F+ YG HWR++R+I T+   +N  +++ ++  E E    ++++
Sbjct:   41 PVFGNWLQVGDDLNHRNLTDLAKKFGDILLLRMGQRNLVVVSSPELSKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRYGWEEEAAQVVEDV 161          
BLAST of FC931548 vs. ExPASy Swiss-Prot
Match: TCMO_HELTU (Trans-cinnamate 4-monooxygenase OS=Helianthus tuberosus GN=CYP73A1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 39/121 (32.23%), Postives = 66/121 (54.55%), Query Frame = 1
Query:  238 PVIGHLHLLGRFPLHRVLGDMADKYGPIFTIRMGVHRALVVSNWEMAKECLTTHDRVFASRPKALVAEILGFNFSMFGFSPYGPHWRQIRKIATLELLSNHRLEKLKHVREGEVKTCLKEL 600
            P+ G+   +G    HR L D+A ++G I  +RMG    +VVS+ E+AKE L T    F SR + +V +I         F+ YG HWR++R+I T+   +N  +++ ++  E E    + ++
Sbjct:   41 PIFGNWLQVGDDLNHRNLTDLAKRFGEILLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRYGWEAEAAAVVDDV 161          
BLAST of FC931548 vs. ExPASy Swiss-Prot
Match: C76C4_ARATH (Cytochrome P450 76C4 OS=Arabidopsis thaliana GN=CYP76C4 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.287e-11
Identity = 42/139 (30.22%), Postives = 71/139 (51.08%), Query Frame = 1
Query:  211 GPPEAGGAWPVIGHLHLLGRFPLHRVLGDMADKYGPIFTIRMGVHRALVVSNWEMAKECLTTHDRVFASRPKALVAEILGF-NFSMFGFSPYGPHWRQIRKIATLELLSNHRLEKLKHVREGEVKTCLKELYDFWDRTN 624
            GPP      P+IG++H +G+ P H    D+A  YGPI +++ G   ++V+++ E A+E L THD++ + R         G    S+    P    WR +RK++   + S  R E  K +R  +V    +EL  F + ++
Sbjct:   41 GPPRL----PIIGNIHQVGKNP-HSSFADLAKIYGPIMSLKFGCLNSVVITSPEAAREVLRTHDQILSGRKSNDSIRCFGHEEVSVIWLPPSSARWRMLRKLSVTLMFSPQRTEATKALRMKKV----QELVSFMNESS 170          
The following BLAST results are available for this feature:
BLAST of FC931548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
TCMO_MEDSA2.702e-1233.06Trans-cinnamate 4-monooxygenase OS=Medicago sativa... [more]
TCMO_GLYEC4.609e-1233.06Trans-cinnamate 4-monooxygenase OS=Glycyrrhiza ech... [more]
TCMO_POPKI6.019e-1233.06Trans-cinnamate 4-monooxygenase OS=Populus kitakam... [more]
TCMO_PHAAU6.019e-1232.23Trans-cinnamate 4-monooxygenase OS=Phaseolus aureu... [more]
C77A3_SOYBN1.027e-1126.53Cytochrome P450 77A3 OS=Glycine max GN=CYP77A3 PE=... [more]
C75AK_ARATH1.027e-1130.89Cytochrome P450 705A20 OS=Arabidopsis thaliana GN=... [more]
TCMO_ZINEL1.341e-1133.06Trans-cinnamate 4-monooxygenase OS=Zinnia elegans ... [more]
TCMO_POPTM1.341e-1133.06Trans-cinnamate 4-monooxygenase OS=Populus tremulo... [more]
TCMO_HELTU1.341e-1132.23Trans-cinnamate 4-monooxygenase OS=Helianthus tube... [more]
C76C4_ARATH2.287e-1130.22Cytochrome P450 76C4 OS=Arabidopsis thaliana GN=CY... [more]

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Properties
Property NameValue
Genbank descriptionC34106D01EF PostHarvP1 Citrus clementina cDNA clone C34106D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931548 ID=FC931548; Name=FC931548; organism=Citrus clementina; type=EST; length=714bp
GACGGTACTGATATTTATCTCCTCTATTTGCCTTGAATCTGCATGCATAT
TATATTAAGCTCAACCACTCAGGCTTAGAAGGAAGCAGCGGCGATGGCCT
TTTTTGCATCCCAAACAAGTGCTGTAGCTGCGATTTTAACCCTTATAATC
TTTCTATACACTTTGTTGTTGTTTGTTTCAAGAAATTACGCAAGCAATAA
GAAGAAGAGAGGACCTCCAGAAGCTGGTGGAGCATGGCCTGTGATTGGGC
ATCTACACCTCTTGGGAAGGTTCCCCCTTCACAGAGTGTTGGGAGACATG
GCTGACAAGTACGGACCAATCTTCACAATCAGGATGGGCGTACATCGGGC
TTTGGTGGTGAGCAATTGGGAGATGGCTAAAGAGTGTCTCACTACACATG
ACAGAGTCTTTGCCAGCCGTCCAAAAGCTCTTGTCGCAGAGATATTAGGC
TTCAACTTTTCCATGTTTGGTTTCAGCCCATATGGTCCCCATTGGCGCCA
GATACGCAAGATAGCCACACTTGAGCTTCTCTCAAACCATCGGCTTGAGA
AGCTCAAGCATGTTCGAGAAGGCGAGGTGAAGACTTGTTTGAAGGAGTTA
TATGACTTTTGGGATCGTACGAACAATTACNAAAGTTCGGATCATAATAA
ACACAGAAGGTATTGGTGGAGATGACAAATGGTTTGAGGATGTAACCCTT
ATGCGATCTTAGGG
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