FC931551

Overview
NameFC931551
Unique NameFC931551
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length647
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931551 vs. ExPASy Swiss-Prot
Match: PCKA_PSESM (Phosphoenolpyruvate carboxykinase [ATP] OS=Pseudomonas syringae pv. tomato GN=pckA PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.696e-47
Identity = 95/215 (44.19%), Postives = 130/215 (60.47%), Query Frame = 2
Query:    2 DPEHRIKVRIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYI 646
            DP H + V++ +  A+H+LF   + I P  E+    G  ++ I NA  F C+       S  ++ IN A ++++I G +YAGEMKK +FS+ ++L+P   +L +H   NMG++GDV                D +RYLIGDDEH W    V NIEGGCYAKCIDLS + EP IW AI+ G VLEN+V D  T+  DY D S+T+N+RAAYP E I
Sbjct:  102 DPAHYLPVKMTTETAWHNLFGRCLFINP--EQYNPAGKDEWEIQNAPWFVCDPERDGTNSDGTVIINFAARKVLIAGMRYAGEMKKAMFSVQNFLLPAVDVLPMHCAANMGEEGDVTLFFGLSGTGKTTLSADESRYLIGDDEHGWGVGVVFNIEGGCYAKCIDLSEKNEPVIWKAIQHGAVLENVVLDPVTKTADYADSSLTQNSRAAYPRELI 314          
BLAST of FC931551 vs. ExPASy Swiss-Prot
Match: PCKA_NITWN (Phosphoenolpyruvate carboxykinase [ATP] OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=pckA PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 4.827e-47
Identity = 97/216 (44.91%), Postives = 132/216 (61.11%), Query Frame = 2
Query:    2 DPEHRIKVRIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAIK-FGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYI 646
            DP  RIK R+ +  A+HSLF+  +  RP + EL  F  P+ T+ +   F  +   H + S   + I+  R+ ++I G+ YAGEMKK +F+ ++Y +P + +L +H   N+G  GD A               D  R LIGDDEH WS +G+ N EGGCYAKCI LSRE EP+I+ A K FG VLEN+V DE TR  D+ D S TENTR+AYP+E+I
Sbjct:  117 DPNFRIKTRVFTELAWHSLFIRTLLRRPETSELAAF-VPELTVIDLPSFRADPQRHGVRSENVVAIDFTRRIILIGGSHYAGEMKKSIFTTLNYYLPDQDVLPMHCSANVGPGGDSAIFFGLSGTGKTTLSADPGRTLIGDDEHGWSKDGIFNFEGGCYAKCIRLSREAEPEIYAASKRFGAVLENVVHDEVTRVPDFNDGSKTENTRSAYPLEFI 331          
BLAST of FC931551 vs. ExPASy Swiss-Prot
Match: PCKA_RHOPB (Phosphoenolpyruvate carboxykinase [ATP] OS=Rhodopseudomonas palustris (strain BisB18) GN=pckA PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.304e-47
Identity = 98/216 (45.37%), Postives = 130/216 (60.19%), Query Frame = 2
Query:    2 DPEHRIKVRIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAI-KFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYI 646
            DP  +IK R+ +  A+HSLF+  +  RP + EL  F  P+ TI +   F  +   H   S   + I+  RK ++I GTQYAGEMKK +F+ ++Y +P + +L +H   N+G DGD A               D NR LIGDDEH W  +GV N EGGCYAKCI LS E EP+I+ A  +FG +LEN V D  TR+ D+ D S TENTR+AYP+E I
Sbjct:  117 DPSFQIKTRVFTEMAWHSLFIRTLLRRPETAELASF-VPELTIIDLASFRADPARHGCKSENVVAIDFTRKIVLIGGTQYAGEMKKSVFTTLNYYLPDKGVLPMHCSANVGPDGDTAIFFGLSGTGKTTLSADPNRTLIGDDEHGWGKDGVFNFEGGCYAKCIKLSAEAEPEIFAASNRFGAILENCVLDPITRKPDFNDGSKTENTRSAYPLESI 331          
BLAST of FC931551 vs. ExPASy Swiss-Prot
Match: PCKA_RHOP2 (Phosphoenolpyruvate carboxykinase [ATP] OS=Rhodopseudomonas palustris (strain HaA2) GN=pckA PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.304e-47
Identity = 98/216 (45.37%), Postives = 132/216 (61.11%), Query Frame = 2
Query:    2 DPEHRIKVRIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNA-IKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYI 646
            DP  +IK R+ +  A+HSLF+  +  RP    LE F  P+ T+ +   F  +   H   S   + I+ ARK ++I GTQYAGEMKK +F+ ++Y +P++ ++ +H   N+G  GD A               D NR LIGDDEH W  +GV N EGGCYAKCI LS E EP+I+ A  +FG VLEN+V DE TR+ D+ D S TENTR+AYP+E I
Sbjct:  117 DPSFQIKTRVFTELAWHSLFIRTLLRRPDRAALESF-VPELTLIDLPSFRADPKRHGCRSENVVAIDFARKIVLIGGTQYAGEMKKSVFTTLNYYLPEKGVMPMHCSANVGPQGDTAIFFGLSGTGKTTLSADPNRTLIGDDEHGWGKDGVFNFEGGCYAKCIKLSPEAEPEIFAASSRFGAVLENVVLDEITRKPDFDDGSKTENTRSAYPLESI 331          
BLAST of FC931551 vs. ExPASy Swiss-Prot
Match: PCKA_PARD8 (Phosphoenolpyruvate carboxykinase [ATP] OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=pckA PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 8.234e-47
Identity = 101/213 (47.42%), Postives = 130/213 (61.03%), Query Frame = 2
Query:   14 RIKVRIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYTHY-MTSSTSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCNMGKDG-DVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYI 646
            R+KVR +   A+ + F+ NM IRPT+EEL ++G PDF  +NA +   + Y    + S T+   NL  KE VIL T Y GEMKKG+FS+M+YL P R I S+H   N  K+G   A               D  R LIGDDEH W + GV N EGGCYAK I+L +E EPDI+NAIK   +LEN+      + +D+ DKSVTENTR +YPI +I
Sbjct:  125 RLKVRFIMEVAWQAHFVTNMFIRPTAEELANYGEPDFVSFNAAKAKVDNYKELGLNSETATVFNLKTKEQVILNTWYGGEMKKGIFSIMNYLNPLRGIASMHCSANTDKEGKSSAIFFGLSGTGKTTLSTDPKRLLIGDDEHGWDNEGVFNYEGGCYAKVINLDKESEPDIYNAIKRDALLENVTVAADGK-IDFADKSVTENTRVSYPIYHI 336          
BLAST of FC931551 vs. ExPASy Swiss-Prot
Match: PCKA_COLP3 (Phosphoenolpyruvate carboxykinase [ATP] OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=pckA PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.404e-46
Identity = 97/216 (44.91%), Postives = 133/216 (61.57%), Query Frame = 2
Query:    2 DPEHRIKVRIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYTHY-MTSSTSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYI 646
            D   R+KVR ++  A+ + F+ NM IRPT  ELE++  PDF + N  +   +++    + S   +  NL  K  +I GT Y GEMKKG+FS+M+Y +P + I S+H   N+G+DGD A               D  R LIGDDEH W DNGV N EGGCYAK I+LS+E EPDI+NAI+   +LEN+  D + + +D+ D S TENTR +YPI +I
Sbjct:  124 DEATRLKVRFITQVAWQAHFVKNMFIRPTDAELENY-EPDFVVMNGAKTVNDKWEEQGLNSENFVAFNLTEKIQLIGGTWYGGEMKKGMFSMMNYYLPLQGIASMHCSANVGEDGDTAIFFGLSGTGKTTLSTDPKRQLIGDDEHGWDDNGVFNFEGGCYAKTINLSKENEPDIYNAIRRDALLENVTVDANGK-IDFDDNSKTENTRVSYPIHHI 337          
BLAST of FC931551 vs. ExPASy Swiss-Prot
Match: PCKA_RHOS4 (Phosphoenolpyruvate carboxykinase [ATP] OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=pckA PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.834e-46
Identity = 96/218 (44.04%), Postives = 135/218 (61.93%), Query Frame = 2
Query:    2 DPEHRIKVRIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCN--MGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIW-NAIKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYI 646
            DPE R+ VR+V+  A+H LF+ +M  RP   EL+ F  PD+T+ N   F  +   H   + T I +N  RK ++I  T+YAGE KK +F+L++Y++P + ++++H   N  +G   D A               D +R LIGDDEH WSD G  N EGGCYAK I+LS E EP+I+    KF TV+EN+V+DE T E+D+ D S+T NTR AYP++YI
Sbjct:  116 DPELRLDVRMVTELAWHGLFIRHMLRRPERAELDSF-VPDWTVINCPSFKADPERHGCRTDTVIVLNFERKLILIANTEYAGENKKSVFTLLNYILPGKGVMAMHCSANHALGDTDDAAVFFGLSGTGKTTLSADPSRTLIGDDEHGWSDRGTFNFEGGCYAKTINLSAEAEPEIYATTSKFATVVENMVYDEETLELDFNDDSLTANTRCAYPLDYI 332          
BLAST of FC931551 vs. ExPASy Swiss-Prot
Match: PCKA_RHOS1 (Phosphoenolpyruvate carboxykinase [ATP] OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=pckA PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.834e-46
Identity = 96/218 (44.04%), Postives = 135/218 (61.93%), Query Frame = 2
Query:    2 DPEHRIKVRIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCN--MGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIW-NAIKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYI 646
            DPE R+ VR+V+  A+H LF+ +M  RP   EL+ F  PD+T+ N   F  +   H   + T I +N  RK ++I  T+YAGE KK +F+L++Y++P + ++++H   N  +G   D A               D +R LIGDDEH WSD G  N EGGCYAK I+LS E EP+I+    KF TV+EN+V+DE T E+D+ D S+T NTR AYP++YI
Sbjct:  116 DPELRLDVRMVTELAWHGLFIRHMLRRPERAELDSF-VPDWTVINCPSFKADPERHGCRTDTVIVLNFERKLILIANTEYAGENKKSVFTLLNYILPGKGVMAMHCSANHALGDTDDAAVFFGLSGTGKTTLSADPSRTLIGDDEHGWSDRGTFNFEGGCYAKTINLSAEAEPEIYATTSKFATVVENMVYDEETLELDFNDDSLTANTRCAYPLDYI 332          
BLAST of FC931551 vs. ExPASy Swiss-Prot
Match: PCKA_PARL1 (Phosphoenolpyruvate carboxykinase [ATP] OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=pckA PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.396e-46
Identity = 94/216 (43.52%), Postives = 134/216 (62.04%), Query Frame = 2
Query:    2 DPEHRIKVRIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAI-KFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYI 646
            D  HR+  RI +  A+HSLF+ N+ I P  EEL  F  P FTI +   F  +   + + + T I  N A++ ++I GT YAGE+KK +FS+++Y +P ++++ +H   N+G++GD A                  R LIGDDEH WS+NGV N EGGCYAK I LS E EP+I+    +FGTVLEN+V DE+TRE+D    ++ EN+R AYP+ +I
Sbjct:  117 DQTHRLATRIYTEYAWHSLFIQNLLIEPKPEELGSFD-PQFTIIDLPSFEADPEKYGVRTGTVIACNFAKRIVLIAGTSYAGEIKKSVFSMLNYELPPKRVMPMHCSANVGEEGDTAIFFGLSGTGKTTLSAVATRTLIGDDEHGWSENGVFNFEGGCYAKMIKLSAEAEPEIYAVTRRFGTVLENVVMDENTRELDLDSAALAENSRGAYPLSFI 331          
BLAST of FC931551 vs. ExPASy Swiss-Prot
Match: PCKA_SILPO (Phosphoenolpyruvate carboxykinase [ATP] OS=Silicibacter pomeroyi GN=pckA PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.129e-46
Identity = 96/218 (44.04%), Postives = 135/218 (61.93%), Query Frame = 2
Query:    2 DPEHRIKVRIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCN--MGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIW-NAIKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYI 646
            DP + I VR+V+  A+H+LF+ ++  RP  E+L +F   DFT+ N   F  +   H   S T I +N  RK ++I GT+YAGE KK +F+L++Y++P++ ++ +H   N  +G   D A               D  R LIGDDEH WSD G  N EGGCYAK I+L+ E EP+I+    KF TV+EN+VFDE T+E+D+ D S+T N R AYP+EYI
Sbjct:  116 DPAYSINVRMVTELAWHNLFIRHLLRRPAREDLNEF-VADFTVINCPSFQADPAKHGCRSETVIAMNFDRKLILIGGTEYAGENKKSVFTLLNYMLPEKGVMPMHCSANHAVGNPVDTAVFFGLSGTGKTTLSADPARVLIGDDEHGWSDRGTFNFEGGCYAKTINLNPEAEPEIYATTTKFATVIENMVFDEETKELDFDDDSLTANMRCAYPLEYI 332          
The following BLAST results are available for this feature:
BLAST of FC931551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 284
Match NameE-valueIdentityDescription
PCKA_PSESM3.696e-4744.19Phosphoenolpyruvate carboxykinase [ATP] OS=Pseudom... [more]
PCKA_NITWN4.827e-4744.91Phosphoenolpyruvate carboxykinase [ATP] OS=Nitroba... [more]
PCKA_RHOPB6.304e-4745.37Phosphoenolpyruvate carboxykinase [ATP] OS=Rhodops... [more]
PCKA_RHOP26.304e-4745.37Phosphoenolpyruvate carboxykinase [ATP] OS=Rhodops... [more]
PCKA_PARD88.234e-4747.42Phosphoenolpyruvate carboxykinase [ATP] OS=Parabac... [more]
PCKA_COLP31.404e-4644.91Phosphoenolpyruvate carboxykinase [ATP] OS=Colwell... [more]
PCKA_RHOS41.834e-4644.04Phosphoenolpyruvate carboxykinase [ATP] OS=Rhodoba... [more]
PCKA_RHOS11.834e-4644.04Phosphoenolpyruvate carboxykinase [ATP] OS=Rhodoba... [more]
PCKA_PARL12.396e-4643.52Phosphoenolpyruvate carboxykinase [ATP] OS=Parviba... [more]
PCKA_SILPO3.129e-4644.04Phosphoenolpyruvate carboxykinase [ATP] OS=Silicib... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34106D04EF PostHarvP1 Citrus clementina cDNA clone C34106D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931551 ID=FC931551; Name=FC931551; organism=Citrus clementina; type=EST; length=647bp
GGACCCAGAACACCGGATCAAAGTCCGAATTGTTTCTGCCAGAGCTTACC
ATTCCTTGTTCATGCACAACATGTGCATCCGACCCACGTCAGAAGAATTA
GAAGATTTTGGTACTCCGGACTTCACAATATACAATGCTGGGCAGTTTCC
TTGCAACCGTTACACCCACTATATGACTTCCTCTACTAGCATTGACATAA
ATCTTGCTAGGAAAGAAATGGTCATTCTTGGCACCCAGTATGCCGGAGAA
ATGAAGAAAGGTCTATTCAGCTTAATGCATTACCTAATGCCTAAACGTCA
AATCCTCTCCCTCCACTCTGGCTGCAATATGGGAAAAGATGGGGATGTTG
CCCTTTTCTTCGGACTATCCGGTACTGGGAAGACAACTCTGTCTACTGAT
CATAACCGGTACTTAATTGGAGATGATGAGCACTGCTGGAGTGATAATGG
AGTATCAAACATTGAAGGCGGGTGCTATGCCAAATGCATTGATCTTTCAA
GGGAGAAGGAGCCTGATATCTGGAATGCCATCAAATTCGGGACTGTGCTA
GAAAACATTGTGTTTGATGAGCATACACGAGAAGTGGACTACTTGGACAA
ATCTGTCACGGAGAACACTCGTGCCGCGTATCCCATAGAGTATATCC
back to top