FC931551

Overview
NameFC931551
Unique NameFC931551
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length647
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15351 contig Ccv1_Contig15351:1..647. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931551 vs. ExPASy Swiss-Prot
Match: PCKA_PSEAB (Phosphoenolpyruvate carboxykinase [ATP] OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=pckA PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.553e-45
Identity = 90/210 (42.86%), Postives = 130/210 (61.90%), Query Frame = 2
Query:   17 IKVRIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYI 646
            + V++ +A A+ +LF   + I P  E+    G  ++ + N   F C        S   + +N A+K+++I G +YAGEMKK +FS+ ++L+P+R +L +H   N+G+ GDV                D +RYLIGDDEH W +  V N+EGGCYAKCIDLS + EP IW AIKFG VLEN+V DE  R  +Y D S+T+N+RAAYP+E++
Sbjct:  107 LPVKMTTATAWQNLFGRCLFIEP--EQYNPAGKDEWQVLNVANFECVPERDGTNSDGCVILNFAQKKVLIAGMRYAGEMKKAMFSVQNFLLPERDVLPMHCAANIGEAGDVTLFFGLSGTGKTTLSADESRYLIGDDEHGWGEGVVFNVEGGCYAKCIDLSEKNEPVIWKAIKFGAVLENVVLDEE-RVPNYADDSLTQNSRAAYPLEHV 313          
BLAST of FC931551 vs. ExPASy Swiss-Prot
Match: PCKA_PSEA8 (Phosphoenolpyruvate carboxykinase [ATP] OS=Pseudomonas aeruginosa (strain LESB58) GN=pckA PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.553e-45
Identity = 90/210 (42.86%), Postives = 130/210 (61.90%), Query Frame = 2
Query:   17 IKVRIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYI 646
            + V++ +A A+ +LF   + I P  E+    G  ++ + N   F C        S   + +N A+K+++I G +YAGEMKK +FS+ ++L+P+R +L +H   N+G+ GDV                D +RYLIGDDEH W +  V N+EGGCYAKCIDLS + EP IW AIKFG VLEN+V DE  R  +Y D S+T+N+RAAYP+E++
Sbjct:  107 LPVKMTTATAWQNLFGRCLFIEP--EQYNPAGKDEWQVLNVANFECVPERDGTNSDGCVILNFAQKKVLIAGMRYAGEMKKAMFSVQNFLLPERDVLPMHCAANIGEAGDVTLFFGLSGTGKTTLSADESRYLIGDDEHGWGEGVVFNVEGGCYAKCIDLSEKNEPVIWKAIKFGAVLENVVLDEE-RVPNYADDSLTQNSRAAYPLEHV 313          
BLAST of FC931551 vs. ExPASy Swiss-Prot
Match: PCKA_NITSB (Phosphoenolpyruvate carboxykinase [ATP] OS=Nitratiruptor sp. (strain SB155-2) GN=pckA PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.553e-45
Identity = 101/209 (48.33%), Postives = 128/209 (61.24%), Query Frame = 2
Query:   23 VRIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYT-HYMTSSTSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYI 646
            +R+V+  A+ + F+ NM IRPT EEL++F  PDFT+Y A     +RY  H + S   I  N+     +I GT Y GE+KKG+FS+M+Y +P    LS+H   N+G   DVA               D NR LIGDDEH W DNGV N EGGCYAK I L  EKEPDI+ AIK   +LEN+V  E+  EVD+ D S TENTR +YPI +I
Sbjct:  118 IRVVTEIAWQAHFVKNMFIRPTEEELQNFH-PDFTLYVAANLKNDRYKEHGLNSDVFIIFNIEENIAIIGGTWYGGEIKKGIFSMMNYWLPLEGKLSMHCSANIGDKDDVALFFGLSGTGKTTLSADPNRRLIGDDEHGWDDNGVFNFEGGCYAKVIGLDPEKEPDIYAAIKRDALLENVVVKEN-GEVDFEDSSKTENTRVSYPIYHI 324          
BLAST of FC931551 vs. ExPASy Swiss-Prot
Match: PCKA_PELPD (Phosphoenolpyruvate carboxykinase [ATP] OS=Pelobacter propionicus (strain DSM 2379) GN=pckA PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.028e-45
Identity = 99/217 (45.62%), Postives = 132/217 (60.83%), Query Frame = 2
Query:    2 DPEHRIKVRIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMP-KRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIW-NAIKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYI 646
            D EHR+ +RI++ RA+HSLF  NM IR T EELE    P F + N   F          S   I +NL RK ++I GT YAGE+KK +F++++Y++P +++ILS+H   N+G  GD A               D +R LIGDDEH W D G+ N EGGCYAK I L  E EP+I+    +FGT+LEN+  +  TR VD  D S TENTRA+YP+ +I
Sbjct:  117 DREHRLPLRIITERAWHSLFARNMFIRATPEELEQH-EPRFALINLPGFHAIPSIDGTHSEAFIIVNLGRKLILIGGTSYAGEIKKSIFTILNYILPVEKKILSMHCSANVGPKGDSAVFFGLSGTGKTTLSADSSRALIGDDEHGWDDKGLFNFEGGCYAKIIRLCPESEPEIFATTRRFGTILENVAINTRTRRVDLDDDSFTENTRASYPLTHI 332          
BLAST of FC931551 vs. ExPASy Swiss-Prot
Match: PCKA_COXBU (Phosphoenolpyruvate carboxykinase [ATP] OS=Coxiella burnetii GN=pckA PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.028e-45
Identity = 90/215 (41.86%), Postives = 135/215 (62.79%), Query Frame = 2
Query:    2 DPEHRIKVRIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYI 646
            D  + + +++V+  A+H+LF  ++ IRP+ +     G P + I +A     +     + S  ++ INL+++ ++++G  YAGEMKK +FS+++YL+P   +L +H   N G+ GDVA               D +R+LIGDDEH WS   V N EGGCYAKCIDLS+E+EP IWNAI+ G ++EN+V DE+    DY D  +T+N+RAAYP EYI
Sbjct:  103 DDNYFLPLKVVTEFAWHNLFACDLFIRPSGDHAN--GKPSWVILSAPGLKTDPERDGVNSDGAVMINLSQRRVLLVGMPYAGEMKKAMFSVLNYLLPPHDVLPMHCAANAGQSGDVALFFGLSGTGKTTLSADPHRFLIGDDEHGWSATSVFNFEGGCYAKCIDLSQEREPMIWNAIRHGAIMENVVLDEN-GVPDYADARLTQNSRAAYPREYI 314          
BLAST of FC931551 vs. ExPASy Swiss-Prot
Match: PCKA_COXBR (Phosphoenolpyruvate carboxykinase [ATP] OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=pckA PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.028e-45
Identity = 90/215 (41.86%), Postives = 135/215 (62.79%), Query Frame = 2
Query:    2 DPEHRIKVRIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYI 646
            D  + + +++V+  A+H+LF  ++ IRP+ +     G P + I +A     +     + S  ++ INL+++ ++++G  YAGEMKK +FS+++YL+P   +L +H   N G+ GDVA               D +R+LIGDDEH WS   V N EGGCYAKCIDLS+E+EP IWNAI+ G ++EN+V DE+    DY D  +T+N+RAAYP EYI
Sbjct:  103 DDNYFLPLKVVTEFAWHNLFACDLFIRPSGDHAN--GKPSWVILSAPGLKTDPERDGVNSDGAVMINLSQRRVLLVGMPYAGEMKKAMFSVLNYLLPPHDVLPMHCAANAGQSGDVALFFGLSGTGKTTLSADPHRFLIGDDEHGWSATSVFNFEGGCYAKCIDLSQEREPMIWNAIRHGAIMENVVLDEN-GVPDYADARLTQNSRAAYPREYI 314          
BLAST of FC931551 vs. ExPASy Swiss-Prot
Match: PCKA_VIBPA (Phosphoenolpyruvate carboxykinase [ATP] OS=Vibrio parahaemolyticus GN=pckA PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.649e-45
Identity = 95/216 (43.98%), Postives = 131/216 (60.65%), Query Frame = 2
Query:    2 DPEHRIKVRIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDI-NLARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYI 646
            +P+ R+ +R+++  A+ + F+ NM IRPT EEL  F  PDF + N  +    ++     +S +  + NL  +  +I GT Y GEMKKG+F++M+Y +P + I S+H   NMGKDGDVA               D  R LIGDDEH W D+GV N EGGCYAK I LS+E EPDI+NAI+   +LEN+        +D+ D S TENTR +YPI +I
Sbjct:  129 NPDTRLSIRVITEVAWQAHFVKNMFIRPTEEELATF-EPDFVVMNGAKCTNPKWEEQGLNSENFTVFNLTERTQLIGGTWYGGEMKKGMFAMMNYFLPLKDIASMHCSANMGKDGDVAVFFGLSGTGKTTLSTDPKRALIGDDEHGWDDDGVFNFEGGCYAKTIKLSKEAEPDIYNAIRRDALLENVTV-RSDGSIDFDDGSKTENTRVSYPIYHI 342          
BLAST of FC931551 vs. ExPASy Swiss-Prot
Match: PCKA_RHOS5 (Phosphoenolpyruvate carboxykinase [ATP] OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=pckA PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.649e-45
Identity = 94/218 (43.12%), Postives = 135/218 (61.93%), Query Frame = 2
Query:    2 DPEHRIKVRIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCN--MGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIW-NAIKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYI 646
            DPE R+ VR+V+  A+H LF+ +M  RP   EL+ F  P++T+ N   F  +   H   + T I +N  +K ++I  T+YAGE KK +F+L++Y++P + ++++H   N  +G   D A               D +R LIGDDEH WSD G  N EGGCYAK I+LS E EP+I+    KF TV+EN+V++E T E+D+ D S+T NTR AYP+EYI
Sbjct:  116 DPELRLDVRMVTELAWHGLFIRHMLRRPERTELDSF-VPEWTVINCPSFKADPARHGCRTDTVITLNFDKKLILIANTEYAGENKKSVFTLLNYILPGKGVMAMHCSANHAIGNTDDAAVFFGLSGTGKTTLSADPSRTLIGDDEHGWSDKGTFNFEGGCYAKTINLSPEAEPEIYATTSKFATVVENMVYNEETLELDFDDDSLTANTRCAYPLEYI 332          
BLAST of FC931551 vs. ExPASy Swiss-Prot
Match: PCKA_MESSB (Phosphoenolpyruvate carboxykinase [ATP] OS=Mesorhizobium sp. (strain BNC1) GN=pckA PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.649e-45
Identity = 96/216 (44.44%), Postives = 133/216 (61.57%), Query Frame = 2
Query:    2 DPEHRIKVRIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIW-NAIKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYI 646
            DPE+ + VR+V+  A+HSLF+ N+ IRP   EL+ F  P  T+ +   F  +   H   + T I ++L R  ++I GT YAGEMKK +F+ ++YL+P + ++ +H   N G +GDVA               + +R LIGDDEH W  +G+ N EGGCYAK I LSRE EP+I+    +FGTVLEN+V DEH    D+ D S TENTR AYP+ +I
Sbjct:  117 DPENALPVRVVTEYAWHSLFIRNLLIRPMRSELKSF-VPQMTVIDLPSFRADPKRHGCRTETIIAMDLKRMIVLIGGTSYAGEMKKSVFTALNYLLPAKGVMPMHCSANEGSEGDVAIFFGLSGTGKTTLSAEPSRTLIGDDEHGWGPHGIFNFEGGCYAKTIKLSREAEPEIFATTERFGTVLENVVVDEH-GVPDFDDGSRTENTRCAYPLHFI 330          
BLAST of FC931551 vs. ExPASy Swiss-Prot
Match: PCKA_HAES2 (Phosphoenolpyruvate carboxykinase [ATP] OS=Haemophilus somnus (strain 2336) GN=pckA PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.649e-45
Identity = 99/216 (45.83%), Postives = 131/216 (60.65%), Query Frame = 2
Query:    2 DPEHRIKVRIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYTHY-MTSSTSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYI 646
            +P+ R+ VRIV+  A+ + F+ NM IRP+ EEL++F  PDFT+ N  +     +    + S   +  N+     +I GT Y GEMKKG+FS+M+Y +P + I S+H   N+GKDGDVA               D  R LIGDDEH W D+GV N EGGCYAK I LS E EPDI+ AI+   +LEN+V  E    VD+ D S TENTR +YPI +I
Sbjct:  126 NPDTRLAVRIVTEVAWQAHFVKNMFIRPSDEELQNF-KPDFTVMNGSKVTNPNWKEQGLNSENFVAFNITEGVQLIGGTWYGGEMKKGMFSMMNYFLPLKGIASMHCSANVGKDGDVAIFFGLSGTGKTTLSTDPKRQLIGDDEHGWDDDGVFNYEGGCYAKTIKLSAESEPDIYRAIRRDALLENVVVRE-DGSVDFDDGSKTENTRVSYPIYHI 339          
The following BLAST results are available for this feature:
BLAST of FC931551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 284
Match NameE-valueIdentityDescription
PCKA_PSEAB1.553e-4542.86Phosphoenolpyruvate carboxykinase [ATP] OS=Pseudom... [more]
PCKA_PSEA81.553e-4542.86Phosphoenolpyruvate carboxykinase [ATP] OS=Pseudom... [more]
PCKA_NITSB1.553e-4548.33Phosphoenolpyruvate carboxykinase [ATP] OS=Nitrati... [more]
PCKA_PELPD2.028e-4545.62Phosphoenolpyruvate carboxykinase [ATP] OS=Pelobac... [more]
PCKA_COXBU2.028e-4541.86Phosphoenolpyruvate carboxykinase [ATP] OS=Coxiell... [more]
PCKA_COXBR2.028e-4541.86Phosphoenolpyruvate carboxykinase [ATP] OS=Coxiell... [more]
PCKA_VIBPA2.649e-4543.98Phosphoenolpyruvate carboxykinase [ATP] OS=Vibrio ... [more]
PCKA_RHOS52.649e-4543.12Phosphoenolpyruvate carboxykinase [ATP] OS=Rhodoba... [more]
PCKA_MESSB2.649e-4544.44Phosphoenolpyruvate carboxykinase [ATP] OS=Mesorhi... [more]
PCKA_HAES22.649e-4545.83Phosphoenolpyruvate carboxykinase [ATP] OS=Haemoph... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34106D04EF PostHarvP1 Citrus clementina cDNA clone C34106D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931551 ID=FC931551; Name=FC931551; organism=Citrus clementina; type=EST; length=647bp
GGACCCAGAACACCGGATCAAAGTCCGAATTGTTTCTGCCAGAGCTTACC
ATTCCTTGTTCATGCACAACATGTGCATCCGACCCACGTCAGAAGAATTA
GAAGATTTTGGTACTCCGGACTTCACAATATACAATGCTGGGCAGTTTCC
TTGCAACCGTTACACCCACTATATGACTTCCTCTACTAGCATTGACATAA
ATCTTGCTAGGAAAGAAATGGTCATTCTTGGCACCCAGTATGCCGGAGAA
ATGAAGAAAGGTCTATTCAGCTTAATGCATTACCTAATGCCTAAACGTCA
AATCCTCTCCCTCCACTCTGGCTGCAATATGGGAAAAGATGGGGATGTTG
CCCTTTTCTTCGGACTATCCGGTACTGGGAAGACAACTCTGTCTACTGAT
CATAACCGGTACTTAATTGGAGATGATGAGCACTGCTGGAGTGATAATGG
AGTATCAAACATTGAAGGCGGGTGCTATGCCAAATGCATTGATCTTTCAA
GGGAGAAGGAGCCTGATATCTGGAATGCCATCAAATTCGGGACTGTGCTA
GAAAACATTGTGTTTGATGAGCATACACGAGAAGTGGACTACTTGGACAA
ATCTGTCACGGAGAACACTCGTGCCGCGTATCCCATAGAGTATATCC
back to top