FC931559

Overview
NameFC931559
Unique NameFC931559
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931559_ssr95 microsatellite FC931559_ssr95:95..106. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig584 contig Ccv1_Contig584:11..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC931559 vs. ExPASy Swiss-Prot
Match: KPRS_VIBCH (Ribose-phosphate pyrophosphokinase OS=Vibrio cholerae GN=prs PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.681e-12
Identity = 29/59 (49.15%), Postives = 42/59 (71.19%), Query Frame = 2 
Query:  464 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 640
            +KLF+G A P L+Q IA  + + LG   + RF+DGE+ VQ+ E+VRG DV+++Q TC P
Sbjct:    4 MKLFAGNAIPELAQRIADRLYISLGDATVSRFSDGEVAVQINENVRGSDVFIIQSTCAP 62

HSP 2 Score: 24.6386 bits (52), Expect = 9.681e-12
Identity = 11/20 (55.00%), Postives = 16/20 (80.00%), Query Frame = 3 
Query:  621 CSPPVLRHENLMELLIMIDA 680
            C+P    ++NLMEL++MIDA
Sbjct:   60 CAPT---NDNLMELVVMIDA 76
[Close]
BLAST of FC931559 vs. ExPASy Swiss-Prot
Match: KPRS1_ENTFA (Ribose-phosphate pyrophosphokinase 1 OS=Enterococcus faecalis GN=prs1 PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 1.256e-11
Identity = 29/60 (48.33%), Postives = 45/60 (75.00%), Query Frame = 2 
Query:  461 RIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 640
            R+K+FS  +N  L+++IA  +GVELGK ++ +F+DGEI V ++ES+RG  VY++Q T  P
Sbjct:    9 RLKIFSLNSNRPLAEKIADAVGVELGKCSVTQFSDGEIQVNIEESIRGAHVYVIQSTSSP 68

HSP 2 Score: 25.7942 bits (55), Expect = 1.256e-11
Identity = 14/19 (73.68%), Postives = 16/19 (84.21%), Query Frame = 3 
Query:  624 SPPVLRHENLMELLIMIDA 680
            S PV  ++NLMELLIMIDA
Sbjct:   66 SSPV--NDNLMELLIMIDA 82
[Close]
BLAST of FC931559 vs. ExPASy Swiss-Prot
Match: KPRS_HAEIN (Ribose-phosphate pyrophosphokinase OS=Haemophilus influenzae GN=prs PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.257e-11
Identity = 29/59 (49.15%), Postives = 42/59 (71.19%), Query Frame = 2 
Query:  464 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 640
            IKLF+G A P L++ I+  + + LG   + RF+DGEI VQ+ E+VRG DV+++Q TC P
Sbjct:    4 IKLFAGNATPELAKRISERLYISLGDATVARFSDGEIQVQINENVRGADVFIIQSTCAP 62

HSP 2 Score: 24.2534 bits (51), Expect = 1.257e-11
Identity = 10/20 (50.00%), Postives = 16/20 (80.00%), Query Frame = 3 
Query:  621 CSPPVLRHENLMELLIMIDA 680
            C+P    ++NLMEL++M+DA
Sbjct:   60 CAPT---NDNLMELVVMVDA 76
[Close]
BLAST of FC931559 vs. ExPASy Swiss-Prot
Match: KPRS_SHEON (Ribose-phosphate pyrophosphokinase OS=Shewanella oneidensis GN=prs PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.257e-11
Identity = 30/59 (50.85%), Postives = 44/59 (74.58%), Query Frame = 2 
Query:  464 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 640
            IKLF+G A P+L+++IA  +  +LG   + RF+DGEI VQ+ E+VRG DV+++Q TC P
Sbjct:    4 IKLFAGNATPSLAKKIADRLFCKLGDAVVGRFSDGEISVQINENVRGADVFIIQSTCAP 62

HSP 2 Score: 24.6386 bits (52), Expect = 1.257e-11
Identity = 10/20 (50.00%), Postives = 16/20 (80.00%), Query Frame = 3 
Query:  621 CSPPVLRHENLMELLIMIDA 680
            C+P    ++NLMEL++M+DA
Sbjct:   60 CAPT---NDNLMELIVMVDA 76
[Close]
BLAST of FC931559 vs. ExPASy Swiss-Prot
Match: KPRS_HAEDU (Ribose-phosphate pyrophosphokinase OS=Haemophilus ducreyi GN=prs PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.257e-11
Identity = 29/59 (49.15%), Postives = 42/59 (71.19%), Query Frame = 2 
Query:  464 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 640
            IKLF+G A P L++ I+  + + LG   + RF+DGEI VQ+ E+VRG DV+++Q TC P
Sbjct:    4 IKLFAGNATPELAKRISERLYISLGNATVGRFSDGEIQVQINENVRGSDVFIIQSTCAP 62

HSP 2 Score: 24.6386 bits (52), Expect = 1.257e-11
Identity = 10/20 (50.00%), Postives = 16/20 (80.00%), Query Frame = 3 
Query:  621 CSPPVLRHENLMELLIMIDA 680
            C+P    ++NLMEL++M+DA
Sbjct:   60 CAPT---NDNLMELIVMVDA 76
[Close]
BLAST of FC931559 vs. ExPASy Swiss-Prot
Match: KPRS_THETN (Ribose-phosphate pyrophosphokinase OS=Thermoanaerobacter tengcongensis GN=prs PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 1.257e-11
Identity = 28/61 (45.90%), Postives = 44/61 (72.13%), Query Frame = 2 
Query:  458 NRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 640
            N +K+F+G +NP L+ EIA ++G++L    +  F+DGEI V++ ESVRG  V+++Q TC P
Sbjct:    6 NSLKIFTGNSNPKLASEIAEHLGLKLADSEVGTFSDGEISVRIGESVRGASVFVIQSTCAP 66

HSP 2 Score: 25.0238 bits (53), Expect = 1.257e-11
Identity = 13/20 (65.00%), Postives = 15/20 (75.00%), Query Frame = 3 
Query:  621 CSPPVLRHENLMELLIMIDA 680
            C+P    + NLMELLIMIDA
Sbjct:   64 CAPV---NNNLMELLIMIDA 80
[Close]
BLAST of FC931559 vs. ExPASy Swiss-Prot
Match: KPRS_RHOBA (Ribose-phosphate pyrophosphokinase OS=Rhodopirellula baltica GN=prs PE=3 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 2.119e-11
Identity = 28/59 (47.46%), Postives = 43/59 (72.88%), Query Frame = 2 
Query:  464 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 640
            +K+FSG AN  L++++  ++ ++  +I + +F DGE Y +L E VRG DV+LVQPTCPP
Sbjct:    4 LKIFSGRANHDLAEKLCRHLHLKPARITLGQFPDGENYCKLDEDVRGRDVFLVQPTCPP 62

HSP 2 Score: 25.7942 bits (55), Expect = 2.119e-11
Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = 3 
Query:  627 PPVLRHENLMELLIMIDAC 683
            PPV  ++NL+ELL MID C
Sbjct:   61 PPV--NDNLIELLTMIDCC 77
[Close]
BLAST of FC931559 vs. ExPASy Swiss-Prot
Match: KPRS_CAMJE (Ribose-phosphate pyrophosphokinase OS=Campylobacter jejuni GN=prs PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 2.120e-11
Identity = 28/58 (48.28%), Postives = 43/58 (74.14%), Query Frame = 2 
Query:  467 KLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 640
            K+FSG+AN   +++++ Y+ + L    +KRF+DGEI VQ+ ESVRG DV+++Q TC P
Sbjct:    5 KIFSGSANVEFARQVSKYLSLPLSDAGVKRFSDGEISVQIDESVRGKDVFIIQSTCAP 62

HSP 2 Score: 23.0978 bits (48), Expect = 2.120e-11
Identity = 11/20 (55.00%), Postives = 15/20 (75.00%), Query Frame = 3 
Query:  621 CSPPVLRHENLMELLIMIDA 680
            C+P    ++NLMELLI+ DA
Sbjct:   60 CAPT---NDNLMELLILTDA 76
[Close]
BLAST of FC931559 vs. ExPASy Swiss-Prot
Match: KPRS_BORPA (Ribose-phosphate pyrophosphokinase OS=Bordetella parapertussis GN=prs PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 2.120e-11
Identity = 26/57 (45.61%), Postives = 44/57 (77.19%), Query Frame = 2 
Query:  470 LFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 640
            +F+GTAN  L+ ++  ++ + LGK+ + RF+DGE+ V++ E+VRG DV+++QPTC P
Sbjct:    2 IFTGTANTRLAVDVVNHLDMSLGKMTVGRFSDGEVMVEINENVRGKDVFVLQPTCAP 58

HSP 2 Score: 23.8682 bits (50), Expect = 2.120e-11
Identity = 9/20 (45.00%), Postives = 16/20 (80.00%), Query Frame = 3 
Query:  621 CSPPVLRHENLMELLIMIDA 680
            C+P    ++NLME+++M+DA
Sbjct:   56 CAPT---NDNLMEIMVMVDA 72
[Close]
BLAST of FC931559 vs. ExPASy Swiss-Prot
Match: KPRS_BORBR (Ribose-phosphate pyrophosphokinase OS=Bordetella bronchiseptica GN=prs PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 2.120e-11
Identity = 26/57 (45.61%), Postives = 44/57 (77.19%), Query Frame = 2 
Query:  470 LFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 640
            +F+GTAN  L+ ++  ++ + LGK+ + RF+DGE+ V++ E+VRG DV+++QPTC P
Sbjct:    2 IFTGTANTRLAVDVVNHLDMSLGKMTVGRFSDGEVMVEINENVRGKDVFVLQPTCAP 58

HSP 2 Score: 23.8682 bits (50), Expect = 2.120e-11
Identity = 9/20 (45.00%), Postives = 16/20 (80.00%), Query Frame = 3 
Query:  621 CSPPVLRHENLMELLIMIDA 680
            C+P    ++NLME+++M+DA
Sbjct:   56 CAPT---NDNLMEIMVMVDA 72
The following BLAST results are available for this feature:
BLAST of FC931559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
KPRS_VIBCH9.681e-1249.15Ribose-phosphate pyrophosphokinase OS=Vibrio chole... [more]
KPRS1_ENTFA1.256e-1148.33Ribose-phosphate pyrophosphokinase 1 OS=Enterococc... [more]
KPRS_HAEIN1.257e-1149.15Ribose-phosphate pyrophosphokinase OS=Haemophilus ... [more]
KPRS_SHEON1.257e-1150.85Ribose-phosphate pyrophosphokinase OS=Shewanella o... [more]
KPRS_HAEDU1.257e-1149.15Ribose-phosphate pyrophosphokinase OS=Haemophilus ... [more]
KPRS_THETN1.257e-1145.90Ribose-phosphate pyrophosphokinase OS=Thermoanaero... [more]
KPRS_RHOBA2.119e-1147.46Ribose-phosphate pyrophosphokinase OS=Rhodopirellu... [more]
KPRS_CAMJE2.120e-1148.28Ribose-phosphate pyrophosphokinase OS=Campylobacte... [more]
KPRS_BORPA2.120e-1145.61Ribose-phosphate pyrophosphokinase OS=Bordetella p... [more]
KPRS_BORBR2.120e-1145.61Ribose-phosphate pyrophosphokinase OS=Bordetella b... [more]

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Properties
Property NameValue
Genbank descriptionC34106E01EF PostHarvP1 Citrus clementina cDNA clone C34106E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931559 ID=FC931559; Name=FC931559; organism=Citrus clementina; type=EST; length=683bp
GGAAAATCCAAAGCGACGAAGCAAAATAGCCAAAGAAGAAGAAAAAGCAA
CCGAAGCTCTCTCTGCCTCCTCACCGTCACCACAAAAACAAAAGGAAAGA
AAGAAAGAGAGTGAGTGAGAGAAAGAGAGATCAAAAGGAGAGAGAGCTGA
AACAACACAACAGATAACAATGGCTTCGCTGACGATGCCGCGCCCTTCAC
AATCCACGTCAGCTTCTTGCTCTTCGCCTATCCCCAGTCGCTGTTCTTTC
GGTGACCAAAACCCAACTTTTTCATTCAGTTTCAGGGACTCTCGCTCTCG
GGTTCACGTCTGTAATGCCGCCGCCGTTAGATGTGACATGGCTGAGGCAT
TGAATTTTCCAAATGGGAAGCCTAATATTCCAGTTCTAAACGAACGGACG
CTGCCCAAATTTTTGGAAACGGCGCGTATGGAGAAAACTGTCAACAGAAC
TACAAATAACAGGATCAAATTGTTCTCTGGCACCGCCAATCCTGCTCTTT
CCCAGGAAATTGCTTGCTACATGGGCGTGGAACTGGGAAAGATCAACATA
AAGCGATTTGCTGATGGTGAAATTTATGTTCAGCTGCAAGAGAGTGTTAG
AGGATGTGATGTTTATTTGGTGCAGCCCACCTGTCCTCCGGCATGAAAAT
CTCATGGAGCTTTTGATAATGATAGATGCGTGT
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