FC931559

Overview
NameFC931559
Unique NameFC931559
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931559_ssr95 microsatellite FC931559_ssr95:95..106. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig584 contig Ccv1_Contig584:11..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC931559 vs. ExPASy Swiss-Prot
Match: PRPS1_BOVIN (Ribose-phosphate pyrophosphokinase 1 OS=Bos taurus GN=PRPS1 PE=2 SV=3)

HSP 1 Score: 61.2326 bits (147), Expect = 4.633e-11
Identity = 30/57 (52.63%), Postives = 44/57 (77.19%), Query Frame = 2 
Query:  464 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTC 634
            IK+FSG+++  LSQ+IA  +G+ELGK+  K+F++ E  V++ ESVRG DVY+VQ  C
Sbjct:    4 IKIFSGSSHQDLSQKIADRLGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGC 60

HSP 2 Score: 26.9498 bits (58), Expect = 4.633e-11
Identity = 11/14 (78.57%), Postives = 14/14 (100.00%), Query Frame = 3 
Query:  642 HENLMELLIMIDAC 683
            ++NLMELLIMI+AC
Sbjct:   64 NDNLMELLIMINAC 77
[Close]
BLAST of FC931559 vs. ExPASy Swiss-Prot
Match: KPRS_BORPE (Ribose-phosphate pyrophosphokinase OS=Bordetella pertussis GN=prs PE=3 SV=2)

HSP 1 Score: 64.3142 bits (155), Expect = 4.638e-11
Identity = 25/57 (43.86%), Postives = 44/57 (77.19%), Query Frame = 2 
Query:  470 LFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 640
            +F+GTAN  L+ ++  ++ + LGK+ + R++DGE+ V++ E+VRG DV+++QPTC P
Sbjct:    2 IFTGTANTRLAVDVVNHLDMSLGKMTVGRYSDGEVMVEINENVRGKDVFVLQPTCAP 58

HSP 2 Score: 23.8682 bits (50), Expect = 4.638e-11
Identity = 9/20 (45.00%), Postives = 16/20 (80.00%), Query Frame = 3 
Query:  621 CSPPVLRHENLMELLIMIDA 680
            C+P    ++NLME+++M+DA
Sbjct:   56 CAPT---NDNLMEIMVMVDA 72
[Close]
BLAST of FC931559 vs. ExPASy Swiss-Prot
Match: KPRS_LEPIN (Ribose-phosphate pyrophosphokinase OS=Leptospira interrogans GN=prs PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 28/63 (44.44%), Postives = 49/63 (77.78%), Query Frame = 2 
Query:  455 NNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPA 643
            N  I +F+G +N  +++EI  ++G++ GKIN+K+F+DGEI V+++++VRG +V++VQ T  PA
Sbjct:    2 NGDIAVFAGNSNKQIAEEICTHLGIQSGKINLKKFSDGEISVKIEDNVRGKEVFIVQSTSAPA 64
[Close]
BLAST of FC931559 vs. ExPASy Swiss-Prot
Match: KPRS_LEPIC (Ribose-phosphate pyrophosphokinase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=prs PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 28/63 (44.44%), Postives = 49/63 (77.78%), Query Frame = 2 
Query:  455 NNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPA 643
            N  I +F+G +N  +++EI  ++G++ GKIN+K+F+DGEI V+++++VRG +V++VQ T  PA
Sbjct:    2 NGDIAVFAGNSNKQIAEEICTHLGIQSGKINLKKFSDGEISVKIEDNVRGKEVFIVQSTSAPA 64
[Close]
BLAST of FC931559 vs. ExPASy Swiss-Prot
Match: KPRS_BLOFL (Ribose-phosphate pyrophosphokinase OS=Blochmannia floridanus GN=prs PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 7.809e-11
Identity = 28/59 (47.46%), Postives = 43/59 (72.88%), Query Frame = 2 
Query:  464 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 640
            +KLF+G A P L+Q IA  + + LG  ++ RF+DGE+ VQ+ E+VRG D++++Q TC P
Sbjct:    1 MKLFTGNAIPELAQRIADKLYITLGNASVGRFSDGEVSVQINENVRGGDIFIIQSTCAP 59

HSP 2 Score: 23.0978 bits (48), Expect = 7.809e-11
Identity = 9/20 (45.00%), Postives = 16/20 (80.00%), Query Frame = 3 
Query:  621 CSPPVLRHENLMELLIMIDA 680
            C+P    ++NL+EL++M+DA
Sbjct:   57 CAPT---NDNLIELIVMVDA 73
[Close]
BLAST of FC931559 vs. ExPASy Swiss-Prot
Match: KPRS_YERPE (Ribose-phosphate pyrophosphokinase OS=Yersinia pestis GN=prs PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 7.809e-11
Identity = 28/59 (47.46%), Postives = 41/59 (69.49%), Query Frame = 2 
Query:  464 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 640
            +KLF+G A P L+Q IA  +   LG   + RF+DGE+ VQ+ E+VRG D++++Q TC P
Sbjct:    4 MKLFAGNATPELAQRIANRLYTSLGDAAVGRFSDGEVSVQINENVRGGDIFIIQSTCAP 62

HSP 2 Score: 24.2534 bits (51), Expect = 7.809e-11
Identity = 10/20 (50.00%), Postives = 16/20 (80.00%), Query Frame = 3 
Query:  621 CSPPVLRHENLMELLIMIDA 680
            C+P    ++NLMEL++M+DA
Sbjct:   60 CAPT---NDNLMELVVMVDA 76
[Close]
BLAST of FC931559 vs. ExPASy Swiss-Prot
Match: KPRS_SALTY (Ribose-phosphate pyrophosphokinase OS=Salmonella typhimurium GN=prs PE=3 SV=2)

HSP 1 Score: 63.1586 bits (152), Expect = 7.809e-11
Identity = 28/59 (47.46%), Postives = 41/59 (69.49%), Query Frame = 2 
Query:  464 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 640
            +KLF+G A P L+Q IA  +   LG   + RF+DGE+ VQ+ E+VRG D++++Q TC P
Sbjct:    4 MKLFAGNATPELAQRIANRLYTSLGDAAVGRFSDGEVSVQINENVRGGDIFIIQSTCAP 62

HSP 2 Score: 24.2534 bits (51), Expect = 7.809e-11
Identity = 10/20 (50.00%), Postives = 16/20 (80.00%), Query Frame = 3 
Query:  621 CSPPVLRHENLMELLIMIDA 680
            C+P    ++NLMEL++M+DA
Sbjct:   60 CAPT---NDNLMELVVMVDA 76
[Close]
BLAST of FC931559 vs. ExPASy Swiss-Prot
Match: KPRS_SALTI (Ribose-phosphate pyrophosphokinase OS=Salmonella typhi GN=prs PE=3 SV=2)

HSP 1 Score: 63.1586 bits (152), Expect = 7.809e-11
Identity = 28/59 (47.46%), Postives = 41/59 (69.49%), Query Frame = 2 
Query:  464 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 640
            +KLF+G A P L+Q IA  +   LG   + RF+DGE+ VQ+ E+VRG D++++Q TC P
Sbjct:    4 MKLFAGNATPELAQRIANRLYTSLGDAAVGRFSDGEVSVQINENVRGGDIFIIQSTCAP 62

HSP 2 Score: 24.2534 bits (51), Expect = 7.809e-11
Identity = 10/20 (50.00%), Postives = 16/20 (80.00%), Query Frame = 3 
Query:  621 CSPPVLRHENLMELLIMIDA 680
            C+P    ++NLMEL++M+DA
Sbjct:   60 CAPT---NDNLMELVVMVDA 76
[Close]
BLAST of FC931559 vs. ExPASy Swiss-Prot
Match: KPRS_ECOLI (Ribose-phosphate pyrophosphokinase OS=Escherichia coli (strain K12) GN=prs PE=1 SV=2)

HSP 1 Score: 63.1586 bits (152), Expect = 7.809e-11
Identity = 28/59 (47.46%), Postives = 41/59 (69.49%), Query Frame = 2 
Query:  464 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 640
            +KLF+G A P L+Q IA  +   LG   + RF+DGE+ VQ+ E+VRG D++++Q TC P
Sbjct:    4 MKLFAGNATPELAQRIANRLYTSLGDAAVGRFSDGEVSVQINENVRGGDIFIIQSTCAP 62

HSP 2 Score: 24.2534 bits (51), Expect = 7.809e-11
Identity = 10/20 (50.00%), Postives = 16/20 (80.00%), Query Frame = 3 
Query:  621 CSPPVLRHENLMELLIMIDA 680
            C+P    ++NLMEL++M+DA
Sbjct:   60 CAPT---NDNLMELVVMVDA 76
[Close]
BLAST of FC931559 vs. ExPASy Swiss-Prot
Match: KPRS_ECOL6 (Ribose-phosphate pyrophosphokinase OS=Escherichia coli O6 GN=prs PE=3 SV=2)

HSP 1 Score: 63.1586 bits (152), Expect = 7.809e-11
Identity = 28/59 (47.46%), Postives = 41/59 (69.49%), Query Frame = 2 
Query:  464 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 640
            +KLF+G A P L+Q IA  +   LG   + RF+DGE+ VQ+ E+VRG D++++Q TC P
Sbjct:    4 MKLFAGNATPELAQRIANRLYTSLGDAAVGRFSDGEVSVQINENVRGGDIFIIQSTCAP 62

HSP 2 Score: 24.2534 bits (51), Expect = 7.809e-11
Identity = 10/20 (50.00%), Postives = 16/20 (80.00%), Query Frame = 3 
Query:  621 CSPPVLRHENLMELLIMIDA 680
            C+P    ++NLMEL++M+DA
Sbjct:   60 CAPT---NDNLMELVVMVDA 76
The following BLAST results are available for this feature:
BLAST of FC931559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
PRPS1_BOVIN4.633e-1152.63Ribose-phosphate pyrophosphokinase 1 OS=Bos taurus... [more]
KPRS_BORPE4.638e-1143.86Ribose-phosphate pyrophosphokinase OS=Bordetella p... [more]
KPRS_LEPIN4.704e-1144.44Ribose-phosphate pyrophosphokinase OS=Leptospira i... [more]
KPRS_LEPIC4.704e-1144.44Ribose-phosphate pyrophosphokinase OS=Leptospira i... [more]
KPRS_BLOFL7.809e-1147.46Ribose-phosphate pyrophosphokinase OS=Blochmannia ... [more]
KPRS_YERPE7.809e-1147.46Ribose-phosphate pyrophosphokinase OS=Yersinia pes... [more]
KPRS_SALTY7.809e-1147.46Ribose-phosphate pyrophosphokinase OS=Salmonella t... [more]
KPRS_SALTI7.809e-1147.46Ribose-phosphate pyrophosphokinase OS=Salmonella t... [more]
KPRS_ECOLI7.809e-1147.46Ribose-phosphate pyrophosphokinase OS=Escherichia ... [more]
KPRS_ECOL67.809e-1147.46Ribose-phosphate pyrophosphokinase OS=Escherichia ... [more]

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Properties
Property NameValue
Genbank descriptionC34106E01EF PostHarvP1 Citrus clementina cDNA clone C34106E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931559 ID=FC931559; Name=FC931559; organism=Citrus clementina; type=EST; length=683bp
GGAAAATCCAAAGCGACGAAGCAAAATAGCCAAAGAAGAAGAAAAAGCAA
CCGAAGCTCTCTCTGCCTCCTCACCGTCACCACAAAAACAAAAGGAAAGA
AAGAAAGAGAGTGAGTGAGAGAAAGAGAGATCAAAAGGAGAGAGAGCTGA
AACAACACAACAGATAACAATGGCTTCGCTGACGATGCCGCGCCCTTCAC
AATCCACGTCAGCTTCTTGCTCTTCGCCTATCCCCAGTCGCTGTTCTTTC
GGTGACCAAAACCCAACTTTTTCATTCAGTTTCAGGGACTCTCGCTCTCG
GGTTCACGTCTGTAATGCCGCCGCCGTTAGATGTGACATGGCTGAGGCAT
TGAATTTTCCAAATGGGAAGCCTAATATTCCAGTTCTAAACGAACGGACG
CTGCCCAAATTTTTGGAAACGGCGCGTATGGAGAAAACTGTCAACAGAAC
TACAAATAACAGGATCAAATTGTTCTCTGGCACCGCCAATCCTGCTCTTT
CCCAGGAAATTGCTTGCTACATGGGCGTGGAACTGGGAAAGATCAACATA
AAGCGATTTGCTGATGGTGAAATTTATGTTCAGCTGCAAGAGAGTGTTAG
AGGATGTGATGTTTATTTGGTGCAGCCCACCTGTCCTCCGGCATGAAAAT
CTCATGGAGCTTTTGATAATGATAGATGCGTGT
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