FC931561

Overview
NameFC931561
Unique NameFC931561
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: TCPA_DROME (T-complex protein 1 subunit alpha OS=Drosophila melanogaster GN=T-cp1 PE=2 SV=2)

HSP 1 Score: 269.626 bits (688), Expect = 1.139e-71
Identity = 131/233 (56.22%), Postives = 175/233 (75.11%), Query Frame = 1
Query:    7 LVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAICTVKRTL 705
            +VV+A Q+VK+T+ RG+  Y IK IN+LKAHGKSAR+S  + GYALN   A+Q MP ++  AKIACLDF+LQKTKM++GVQVL+ DP +LE IR RE D+TKERI  +L  G NV+L + G+DD+ +KYFVEAGA+AVRRV+K D++ IAKATGA  +++  +M+GEE+FD+S++G               I+IKGTK  +A S+ILRG ND+  DEMER++HDA+C VKR L
Sbjct:  174 MVVDAAQSVKITDPRGQAAYSIKAINVLKAHGKSARESVLIPGYALNCTIASQQMPKKIVNAKIACLDFSLQKTKMKMGVQVLINDPDKLEAIRARELDITKERINMILGTGVNVVLVSGGVDDLCMKYFVEAGAMAVRRVKKSDLKIIAKATGAAFITSLTNMDGEESFDASMVGEAAEVAQERICDDELILIKGTKARAAASIILRGPNDFYCDEMERSVHDALCVVKRVL 406          
BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: TCPA_SCHPO (T-complex protein 1 subunit alpha OS=Schizosaccharomyces pombe GN=cct1 PE=2 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 1.943e-71
Identity = 133/235 (56.60%), Postives = 178/235 (75.74%), Query Frame = 1
Query:    1 ANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAICTVKRTL 705
            + + V+A+ +VK +N +GE +YP+K +NILKAHGKS+R+S  + GYALN   A+Q M  RV  AKIA LD +LQKTKM LGV V + DP +LEKIR+RE  +T ER++K+L AGANVILTTKGIDD+ LK  +EAGA+AVRR +KED+R IAKA+GAT++S+ +++EGEETF+SS LGS              I++KGTK  S+ S++LRG N+Y LDEMER++HD++  VKRTL
Sbjct:  174 STMAVDAMLSVKTSNSKGETRYPVKAVNILKAHGKSSRESVLVKGYALNCTIASQAMKTRVQNAKIAVLDMDLQKTKMALGVHVTIDDPDQLEKIREREVMITLERVKKILNAGANVILTTKGIDDLCLKSIIEAGAMAVRRCKKEDLRRIAKASGATLLSSLSNLEGEETFESSYLGSAEEVVQEKFSDDECILVKGTKAYSSASIVLRGPNEYSLDEMERSMHDSLSVVKRTL 408          
BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: TCPA_CAEEL (T-complex protein 1 subunit alpha OS=Caenorhabditis elegans GN=cct-1 PE=2 SV=2)

HSP 1 Score: 267.314 bits (682), Expect = 5.654e-71
Identity = 135/233 (57.94%), Postives = 175/233 (75.11%), Query Frame = 1
Query:    7 LVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAICTVKRTL 705
            LVV+A +AV++ N  G+V YPI  +N+LKAHGKSAR+S  + GYALN   A+Q MPLRV  AKIACLDF+L K KM LG+ V+V DP +LE IR+ E D+TK RI+K+LKAGANV+LTT GIDD+ LK FVE+GA+AVRR +K D++ IAKATGAT+  + A +EG+E FD+SLLG               I+IKG K+ +A S+ILRG+ND MLDEMER++HD++C V+R L
Sbjct:  175 LVVDAAEAVRVENN-GKVTYPINAVNVLKAHGKSARESVLVKGYALNCTVASQAMPLRVQNAKIACLDFSLMKAKMHLGISVVVEDPAKLEAIRREEFDITKRRIDKILKAGANVVLTTGGIDDLCLKQFVESGAMAVRRCKKSDLKRIAKATGATLTVSLATLEGDEAFDASLLGHADEIVQERISDDELILIKGPKSRTASSIILRGANDVMLDEMERSVHDSLCVVRRVL 406          
BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: TCPA_YEAST (T-complex protein 1 subunit alpha OS=Saccharomyces cerevisiae GN=TCP1 PE=1 SV=2)

HSP 1 Score: 265.003 bits (676), Expect = 2.806e-70
Identity = 133/237 (56.12%), Postives = 177/237 (74.68%), Query Frame = 1
Query:    1 ANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPA--KIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAICTVKRTL 705
            +N+VV+A+ AVK  N +GE+KYP+K +N+LKAHGKSA +S  + GYALN   A+Q MP R+A    KIACLD NLQK +M +GVQ+ + DP +LE+IR+REA +  ER++K++ AGA V+LTTKGIDD+ LK FVEA  + VRR +KED+R IA+ATGAT+VS+ +++EGEETF+SS LG               I+IKGT   S+ S+ILRG+NDY LDEMER+LHD++  VKRTL
Sbjct:  177 SNMVVDALLAVKTQNSKGEIKYPVKAVNVLKAHGKSATESLLVPGYALNCTVASQAMPKRIAGGNVKIACLDLNLQKARMAMGVQINIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVVLTTKGIDDLCLKEFVEAKIMGVRRCKKEDLRRIARATGATLVSSMSNLEGEETFESSYLGLCDEVVQAKFSDDECILIKGTSKHSSSSIILRGANDYSLDEMERSLHDSLSVVKRTL 413          
BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: TCPA_DICDI (T-complex protein 1 subunit alpha OS=Dictyostelium discoideum GN=tcp1 PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 3.430e-68
Identity = 130/235 (55.32%), Postives = 176/235 (74.89%), Query Frame = 1
Query:    1 ANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAICTVKRTL 705
            + +V+EA+  VK  + +G+VKYPI  INILKAHGKSA++S  + GYALN   A++GMP R+  AKIA LDFNL KTKM+LG +V+VT+  +LE IR RE D+ KERI  ++K+GANV+LTTKGIDD+ LKYFVEAG +AVRR +KED++ IAK+ G T++ T A++EGEE+FD++ LG               I++K +   SA S+ILRG+N+ MLDEMER++HD++C VKRTL
Sbjct:  170 SKIVIEAITRVKTIDYKGDVKYPINAINILKAHGKSAKESTLVEGYALNCTVASEGMPKRIQGAKIAFLDFNLAKTKMKLGQKVVVTNVNDLEAIRDRENDIVKERISLIIKSGANVVLTTKGIDDLCLKYFVEAGCMAVRRCKKEDLKRIAKSCGGTVLITLANLEGEESFDTTALGIADEVVQDRLADDELIIVKNSNKKSA-SIILRGANELMLDEMERSIHDSLCIVKRTL 403          
BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: TCPA_SCHMA (T-complex protein 1 subunit alpha OS=Schistosoma mansoni GN=TCP-1A PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.636e-65
Identity = 125/235 (53.19%), Postives = 170/235 (72.34%), Query Frame = 1
Query:    1 ANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAICTVKRTL 705
            + + V+A+ AV+++       YPIK +NILKAHG+S  +S  ++GYALN   A+Q MP  +  AKIA LDF+LQK KM+LGVQV+V DP +LE IRQREAD+TKERI+K+L AGANVILTT GIDD+ +KYFVE  A+AVRR +K D++++AKATG  ++ + ADMEG+E FD + LG+              I+++G K   + S+ILRG+ND+ +DEMER+LHDA+  VKR L
Sbjct:  166 SQMAVDALMAVEVSGGPKGPVYPIKAVNILKAHGRSMSESMLIDGYALNCTAASQQMPRIIKKAKIAFLDFSLQKVKMKLGVQVVVKDPAQLEAIRQREADITKERIQKILNAGANVILTTGGIDDLCMKYFVEVNAMAVRRCKKVDLKNMAKATGGQLIVSLADMEGDEVFDPTKLGNAEEVSQERICDDELIILRGPKVHPSASIILRGANDFYVDEMERSLHDALLVVKRVL 400          
BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: TCPA_TETPY (T-complex protein 1 subunit alpha OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.349e-64
Identity = 117/235 (49.79%), Postives = 167/235 (71.06%), Query Frame = 1
Query:    1 ANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAICTVKRTL 705
            + +VV+AV++VKMTN  G+ KYPIK + I+K+HG+S   S  + GY L   R  Q M  R+  AKIA LDFNL K ++Q+G+Q+LV DP+ LEKIR +E ++ KER +K+++AGANVI+T+ G+DD+A KY VEAG + +RRV K D+R +AKATG T+V+T A  EG+E F++S LG               I  KGTK  +  S+I+RG+N++M+DE++R+LHD++C VKRTL
Sbjct:  169 SQIVVDAVESVKMTNLMGDTKYPIKNVKIIKSHGQSTLQSQLIRGYVLQTQRCDQQMKTRIEKAKIALLDFNLNKFRLQMGIQILVNDPKNLEKIRFKECEILKERCKKIIEAGANVIITSAGMDDVATKYLVEAGVMGLRRVDKHDLRRLAKATGGTIVTTLATPEGDEVFEASYLGECAEVYEEAVGDNDCIFFKGTKRANCASIIIRGANEFMVDEVDRSLHDSLCVVKRTL 403          
BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: TCPA_ENCCU (T-complex protein 1 subunit alpha OS=Encephalitozoon cuniculi GN=TCP1 PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.019e-48
Identity = 100/233 (42.92%), Postives = 152/233 (65.24%), Query Frame = 1
Query:    7 LVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAICTVKRTL 705
            +V++A++ ++  ++  +  YPI+ INILK  G S ++S+   GYALN   A+  M  +V   KI C+DF LQK K  L V ++V DP +LE IR++E ++T+ +I+ ++ +GANV+LTT+GIDDM  K  VEA  + +RR +KED+  IAKATG ++VS+ AD+ G ++  S  LG               ++I G K   A S+ILRG+N  +LDEM+R++HDA+C +KRTL
Sbjct:  176 IVIDALKCIESVDENRKNMYPIEDINILKHPGGSMKESFLHQGYALNCSLASNFMKRQVKKPKILCIDFGLQKYKNPLTVSIVVDDPNKLEDIRKKELEITRRQIKTIIDSGANVVLTTRGIDDMCTKLLVEADVVGIRRCKKEDLLVIAKATGTSLVSSIADISGADSISS--LGFADKFEVVQIGEEECVLINGLKKKMA-SIILRGANCQLLDEMQRSVHDAVCVLKRTL 405          
BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: THS_PYRHO (Thermosome subunit OS=Pyrococcus horikoshii GN=ths PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.528e-35
Identity = 83/235 (35.32%), Postives = 131/235 (55.74%), Query Frame = 1
Query:    1 ANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAICTVKRTL 705
            A L VEAV+ V    + G++K  I  I + K  G + RD+  + G  ++      GMP R+  AKIA ++  L+  + +   ++ +T P +L+   ++E  M KE ++K+ + GANV+   KGIDD+A  Y  + G +AVRRV+K DM  +AKATGA +V+   D+  E+      LG               I ++G K   AV++++RG  ++++DE+ERAL DAI  VK  L
Sbjct:  175 AKLAVEAVKLVA-EEKDGKLKVDIDNIKLEKKEGGAVRDTRLIRGVVIDKEVVHPGMPKRIENAKIALINDALEVKETETDAEIRITSPEQLQAFLEQEEKMLKEMVDKIKEVGANVVFVQKGIDDLAQHYLAKYGILAVRRVKKSDMEKLAKATGAKIVTNIRDLTPED------LGEAELVEERKVAGENMIFVEGCKNPKAVTILIRGGTEHVVDEVERALEDAIKVVKDIL 402          
BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: THSB_AERPE (Thermosome subunit beta OS=Aeropyrum pernix GN=thsB PE=3 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 5.527e-34
Identity = 82/232 (35.34%), Postives = 134/232 (57.76%), Query Frame = 1
Query:    1 ANLVVEAVQAVKMTNQRGEVKY-PIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAICTV 693
            A L VEAV+ V    +RG+  Y  +  I I+K HG S RD+  + G  L+       MP RV  A+IA LD  L+  K ++ +++ +T P +++ + +++  + +E+IEK+   GANV++T KGIDD+A  +  + G +AVRRV++ D+  IA+ATGA +V+   D+  E+      LG               + I+G K   +V+++LRG  + ++DE ER+LHDA+  V
Sbjct:  182 AELAVEAVRTV--AERRGDRWYVDLNNIQIVKKHGGSLRDTRLVRGIVLDKEVVHPDMPRRVENARIALLDTPLEIEKPEIDLEISITSPEQIKALYEKQERILQEKIEKIAATGANVVITQKGIDDVAQHFLAKKGILAVRRVKRSDIEKIARATGARIVTDIEDLRPED------LGYAELVEERKVGEDKMVFIEGAKNPKSVTILLRGGFERLVDEAERSLHDALSVV 405          
The following BLAST results are available for this feature:
BLAST of FC931561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
TCPA_DROME1.139e-7156.22T-complex protein 1 subunit alpha OS=Drosophila me... [more]
TCPA_SCHPO1.943e-7156.60T-complex protein 1 subunit alpha OS=Schizosacchar... [more]
TCPA_CAEEL5.654e-7157.94T-complex protein 1 subunit alpha OS=Caenorhabditi... [more]
TCPA_YEAST2.806e-7056.12T-complex protein 1 subunit alpha OS=Saccharomyces... [more]
TCPA_DICDI3.430e-6855.32T-complex protein 1 subunit alpha OS=Dictyostelium... [more]
TCPA_SCHMA4.636e-6553.19T-complex protein 1 subunit alpha OS=Schistosoma m... [more]
TCPA_TETPY1.349e-6449.79T-complex protein 1 subunit alpha OS=Tetrahymena p... [more]
TCPA_ENCCU3.019e-4842.92T-complex protein 1 subunit alpha OS=Encephalitozo... [more]
THS_PYRHO8.528e-3535.32Thermosome subunit OS=Pyrococcus horikoshii GN=ths... [more]
THSB_AERPE5.527e-3435.34Thermosome subunit beta OS=Aeropyrum pernix GN=ths... [more]

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Properties
Property NameValue
Genbank descriptionC34106E04EF PostHarvP1 Citrus clementina cDNA clone C34106E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931561 ID=FC931561; Name=FC931561; organism=Citrus clementina; type=EST; length=706bp
GCTAATTTGGTTGTAGAAGCAGTTCAAGCAGTAAAGATGACTAATCAACG
AGGTGAAGTCAAGTACCCAATCAAGGGGATCAATATTTTGAAAGCTCATG
GCAAAAGTGCCAGAGATAGCTACTTTCTAAATGGGTATGCTCTTAACGCT
TTTCGTGCTGCTCAAGGAATGCCTCTTAGAGTTGCCCCTGCAAAGATTGC
CTGTCTTGACTTTAATCTCCAGAAGACAAAAATGCAATTGGGTGTCCAAG
TCTTAGTCACCGATCCGAGAGAACTTGAGAAAATTCGTCAAAGAGAAGCT
GATATGACGAAGGAACGTATTGAGAAACTTCTGAAAGCTGGAGCCAATGT
TATTCTGACAACAAAAGGCATCGATGACATGGCACTGAAGTACTTTGTGG
AGGCTGGGGCTATTGCTGTTAGACGTGTTCGGAAGGAGGATATGCGACAC
ATTGCCAAGGCAACTGGTGCAACTATGGTTTCAACATTCGCTGACATGGA
AGGGGAGGAAACATTTGATTCGTCACTTCTTGGATCTGCTGATGAAGTGG
TAGAAGAGCGTGTTGCCGATGATGATGTGATTATGATAAAGGGGACTAAA
ACTACAAGTGCGGTTTCCTTGATACTTAGAGGAAGCAATGACTATATGCT
TGATGAGATGGAGAGAGCCCTGCATGATGCTATATGTACTGTCAAGAGGA
CCCTTG
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