FC931561

Overview
NameFC931561
Unique NameFC931561
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14336 contig Ccv1_Contig14336:640..1345. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: THSA_SULSH (Thermosome subunit alpha OS=Sulfolobus shibatae GN=thsA PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.757e-31
Identity = 76/234 (32.48%), Postives = 123/234 (52.56%), Query Frame = 1
Query:    4 NLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAICTVKRTL 705
            ++V++A+  V      G     +  I I K  G S  DS  + G  L+      GMP RV  AKIA LD  L+  K ++  ++ +T P +++     E+   K+ ++KL   GANV++  KGIDD+A  +  + G +AVRRV++ D+  + KA GA ++S+  D   ++      LG               + I+G K   AV+++LRGSND  LDE ER+++DA+  ++  L
Sbjct:  180 DMVIDAIVNVAEPLPNGGYNVSLDLIKIDKKKGGSIEDSVLVKGLVLDKEVVHPGMPRRVTKAKIAVLDAALEVEKPEISAKISITSPEQIKAFLDEESKYLKDMVDKLASIGANVVICQKGIDDIAQHFLAKKGILAVRRVKRSDIEKLEKALGARIISSIKDATPDD------LGYAELVEERRVGNDKMVFIEGAKNLKAVNILLRGSNDMALDEAERSINDALHALRNIL 407          
BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: THSB_DESMO (Thermosome subunit beta (Fragment) OS=Desulfurococcus mobilis GN=thsB PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.664e-30
Identity = 76/231 (32.90%), Postives = 127/231 (54.98%), Query Frame = 1
Query:   19 AVQAVK-MTNQRGEVKY-PIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAICTVKRTL 705
            AV+AVK +  +RG+  Y  +  I I+K +G +  DS  + G  L+      GMP RV  AKI  LD  L+  K ++  ++ + DP +LEK  Q+E ++  + ++K+   GANV++  KGID++A  +  + G +AVRRV++ D+  + +ATG  +VS   D+  E+      LG               + I+G K   +VS+++RG  + ++DE ER++ DA+  V   L
Sbjct:  162 AVKAVKQVVEKRGDKNYVDLDNIQIIKKYGGALLDSMLVYGIVLDKEVVHPGMPRRVENAKIVLLDAPLEIEKPEIDAEIRINDPEQLEKFLQQEEEILMKMVDKIASVGANVVVCQKGIDEVAQHFLAKKGILAVRRVKRSDLEKLERATGGRIVSNIEDLTPED------LGYAALVEERKVGEDKMVFIEGCKNPRSVSIVIRGGLERLVDEAERSIRDALSAVADAL 386          
BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: THSA_THEK1 (Thermosome subunit alpha OS=Thermococcus sp. (strain KS-1) GN=thsA PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.839e-30
Identity = 77/228 (33.77%), Postives = 124/228 (54.39%), Query Frame = 1
Query:   19 AVQAVKMTNQRGEVKYPIKGINIL--KAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAICTVK 696
            AV+AVK   ++ + KY +   NI   K  G+   +S  + G  ++       MP RV  AKIA ++  L+  K +   ++ +T P +L    ++E  M K+ ++ + + GANV+   KGIDD+A  Y  + G +AVRRV+K DM  +AKATGA +V+   D+  E+      LG               I ++G K   AV++++RG  ++++DE+ERAL DA+  VK
Sbjct:  178 AVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPED------LGYAEVVEERKLAGENMIFVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVK 399          
BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: THSA_PYRKO (Thermosome subunit alpha OS=Pyrococcus kodakaraensis GN=thsA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.839e-30
Identity = 77/228 (33.77%), Postives = 124/228 (54.39%), Query Frame = 1
Query:   19 AVQAVKMTNQRGEVKYPIKGINIL--KAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAICTVK 696
            AV+AVK   ++ + KY +   NI   K  G+   +S  + G  ++       MP RV  AKIA ++  L+  K +   ++ +T P +L    ++E  M K+ ++ + + GANV+   KGIDD+A  Y  + G +AVRRV+K DM  +AKATGA +V+   D+  E+      LG               I ++G K   AV++++RG  ++++DE+ERAL DA+  VK
Sbjct:  178 AVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPED------LGYAEVVEERKLAGENMIFVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVK 399          
BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: THSA_THEK8 (Thermosome subunit alpha OS=Thermococcus sp. (strain KS-8) GN=thsA PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.842e-30
Identity = 77/228 (33.77%), Postives = 123/228 (53.95%), Query Frame = 1
Query:   19 AVQAVKMTNQRGEVKYPIKGINIL--KAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAICTVK 696
            AV AVK   ++ + KY +   NI   K  G+   +S  + G  ++       MP RV  AKIA ++  L+  K +   ++ +T P +L    ++E  M K+ ++ + + GANV+   KGIDD+A  Y  + G +AVRRV+K DM  +AKATGA +V+   D+  E+      LG               I ++G K   AV++++RG  ++++DE+ERAL DA+  VK
Sbjct:  178 AVDAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVEGAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPED------LGYAEIVEERKLAGENMIFVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVK 399          
BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: THS_METJA (Thermosome subunit OS=Methanocaldococcus jannaschii GN=ths PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.324e-30
Identity = 79/235 (33.62%), Postives = 129/235 (54.89%), Query Frame = 1
Query:    1 ANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAICTVKRTL 705
            A +VVEAV+AV +  + G+V   +  I + K  G    ++  + G  ++  R    MP +V  AKIA L+  ++  + +   ++ +TDP +L +  ++E  M K+ +EK+   GANV+   KGIDD+A  Y  + G +AVRRV+K DM  +AKATGA +V+   D+  E+      LG               I ++  K   AV+++ RGS +++++E+ RA+ DAI  VK  L
Sbjct:  174 AEIVVEAVRAV-VDEETGKVDKDL--IKVEKKEGAPIEETKLIRGVVIDKERVNPQMPKKVENAKIALLNCPIEVKETETDAEIRITDPAKLMEFIEQEEKMIKDMVEKIAATGANVVFCQKGIDDLAQHYLAKKGILAVRRVKKSDMEKLAKATGARIVTKIDDLTPED------LGEAGLVEERKVAGDAMIFVEQCKHPKAVTILARGSTEHVVEEVARAIDDAIGVVKCAL 399          
BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: THSA_HALSA (Thermosome subunit alpha OS=Halobacterium salinarium GN=thsA PE=3 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 6.324e-30
Identity = 76/235 (32.34%), Postives = 125/235 (53.19%), Query Frame = 1
Query:    1 ANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAICTVKRTL 705
            ++LVV AVQ+V   N           + + K  G +  +S  + G  ++  R ++ MP  V  A IA +D  L+  + ++  +V VTDP +L+    +E +  KE ++ L  AGANV+    GIDDMA  Y  + G +AVRR + +D   +++ATGAT VS   D+E  +      LG+              I ++  +   +V+LILRG  ++++DE+ERA+ D++  V+ TL
Sbjct:  176 SDLVVRAVQSVADDND-----VDTDNVKVEKVTGGAIENSELIEGVIVDKERVSENMPYAVEDANIALVDDGLEVQETEIDTEVNVTDPDQLQNFLDQEEEQLKEMVDALKDAGANVVFADSGIDDMAQHYLAKEGILAVRRAKSDDFTRLSRATGATPVSNVNDIEAAD------LGAAGSVAQKDIGGDERIFVEDVEEAKSVTLILRGGTEHVVDEVERAIEDSLGVVRVTL 399          
BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: THS_METTL (Thermosome subunit OS=Methanococcus thermolithotrophicus GN=ths PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.840e-29
Identity = 74/233 (31.76%), Postives = 132/233 (56.65%), Query Frame = 1
Query:    7 LVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAICTVKRTL 705
            ++VEAV AV   ++ G+V   +  I I K  G S  ++  +NG  ++  R +  MP ++  AKIA L+  ++  + +   ++ +TDP +L +  ++E  M K+ ++ +  +GANV+   KGIDD+A  Y  + G +AVRRV+K DM  ++KATGA +V+   D++ E+      LG               I ++  K   AV++++RG+ +++++E+ RA+ DAI  V  T+
Sbjct:  175 MIVEAVTAV--VDESGKVDKDL--IKIEKKEGASVDETELINGVLIDKERVSPQMPKKIENAKIALLNCPIEVKETETDAEIRITDPTKLMEFIEQEEKMLKDMVDTIKASGANVLFCQKGIDDLAQHYLAKEGILAVRRVKKSDMEKLSKATGANVVTNIKDLKAED------LGEAGIVEERKIAGDAMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAIGVVACTI 397          
BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: THS1_HALVO (Thermosome subunit 1 OS=Halobacterium volcanii GN=cct1 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.558e-28
Identity = 74/235 (31.49%), Postives = 127/235 (54.04%), Query Frame = 1
Query:    1 ANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAICTVKRTL 705
            + LVV+AV AVK      +       ++I K  G +  +S  + G  ++  R  + MP  V  A IA LD  L+  + ++  +V VTDP +L++   +E    KE +++L++ GA+ +    GIDDMA  Y  + G +AVRR +  D++ +A+ATG  +VS+  D+E ++      LG               I ++  +   +V+LILRG  ++++DE+ERA+ D++  V+ TL
Sbjct:  177 SELVVDAVLAVK-----DDDGIDTNNVSIEKVVGGTIDNSELVEGVIVDKERVDENMPYAVEDANIAILDDALEVRETEIDAEVNVTDPDQLQQFLDQEEKQLKEMVDQLVEVGADAVFVGDGIDDMAQHYLAKEGILAVRRAKSSDLKRLARATGGRVVSSLDDIEADD------LGFAGSVGQKDVGGDERIFVEDVEDAKSVTLILRGGTEHVVDELERAIEDSLGVVRTTL 400          
BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: THS2_HALVO (Thermosome subunit 2 OS=Halobacterium volcanii GN=cct2 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.361e-23
Identity = 65/236 (27.54%), Postives = 123/236 (52.12%), Query Frame = 1
Query:    1 ANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGT-KTTSAVSLILRGSNDYMLDEMERALHDAICTVKRTL 705
            A+L+V AV+ V +    G     ++ ++I    G+SA +S  L G  ++       MP++   A +  L+  ++  +  +   V +  P +L+K   +E    K+++++++ +GA+V+   KGIDD+A  Y  + G +AVRR +K D+R +   TGA +VS        ++ ++++LG                 ++G       V+L+LRGS D+++DE+ER + DA+  V  T+
Sbjct:  177 ADLIVRAVRQVTVEANDGSHVVDLENVSIETQTGRSASESELLTGAVIDKDPVHDDMPVQFDEADVLLLNEPVEVEETDIDTNVSIESPDQLQKFLDQEEAQLKQKVDQIVDSGADVVFCQKGIDDLAQHYLAKQGILAVRRTKKSDIRFLKNITGAAVVSDL------DSIEAAVLG---RASVRRDEAGELFYVEGIGDDVHGVTLLLRGSTDHVVDELERGVQDALDVVASTV 403          
The following BLAST results are available for this feature:
BLAST of FC931561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
THSA_SULSH9.757e-3132.48Thermosome subunit alpha OS=Sulfolobus shibatae GN... [more]
THSB_DESMO1.664e-3032.90Thermosome subunit beta (Fragment) OS=Desulfurococ... [more]
THSA_THEK12.839e-3033.77Thermosome subunit alpha OS=Thermococcus sp. (stra... [more]
THSA_PYRKO2.839e-3033.77Thermosome subunit alpha OS=Pyrococcus kodakaraens... [more]
THSA_THEK84.842e-3033.77Thermosome subunit alpha OS=Thermococcus sp. (stra... [more]
THS_METJA6.324e-3033.62Thermosome subunit OS=Methanocaldococcus jannaschi... [more]
THSA_HALSA6.324e-3032.34Thermosome subunit alpha OS=Halobacterium salinari... [more]
THS_METTL1.840e-2931.76Thermosome subunit OS=Methanococcus thermolithotro... [more]
THS1_HALVO1.558e-2831.49Thermosome subunit 1 OS=Halobacterium volcanii GN=... [more]
THS2_HALVO3.361e-2327.54Thermosome subunit 2 OS=Halobacterium volcanii GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34106E04EF PostHarvP1 Citrus clementina cDNA clone C34106E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931561 ID=FC931561; Name=FC931561; organism=Citrus clementina; type=EST; length=706bp
GCTAATTTGGTTGTAGAAGCAGTTCAAGCAGTAAAGATGACTAATCAACG
AGGTGAAGTCAAGTACCCAATCAAGGGGATCAATATTTTGAAAGCTCATG
GCAAAAGTGCCAGAGATAGCTACTTTCTAAATGGGTATGCTCTTAACGCT
TTTCGTGCTGCTCAAGGAATGCCTCTTAGAGTTGCCCCTGCAAAGATTGC
CTGTCTTGACTTTAATCTCCAGAAGACAAAAATGCAATTGGGTGTCCAAG
TCTTAGTCACCGATCCGAGAGAACTTGAGAAAATTCGTCAAAGAGAAGCT
GATATGACGAAGGAACGTATTGAGAAACTTCTGAAAGCTGGAGCCAATGT
TATTCTGACAACAAAAGGCATCGATGACATGGCACTGAAGTACTTTGTGG
AGGCTGGGGCTATTGCTGTTAGACGTGTTCGGAAGGAGGATATGCGACAC
ATTGCCAAGGCAACTGGTGCAACTATGGTTTCAACATTCGCTGACATGGA
AGGGGAGGAAACATTTGATTCGTCACTTCTTGGATCTGCTGATGAAGTGG
TAGAAGAGCGTGTTGCCGATGATGATGTGATTATGATAAAGGGGACTAAA
ACTACAAGTGCGGTTTCCTTGATACTTAGAGGAAGCAATGACTATATGCT
TGATGAGATGGAGAGAGCCCTGCATGATGCTATATGTACTGTCAAGAGGA
CCCTTG
back to top