FC931561

Overview
NameFC931561
Unique NameFC931561
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: TCPD_DICDI (T-complex protein 1 subunit delta OS=Dictyostelium discoideum GN=cct4 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.461e-18
Identity = 61/239 (25.52%), Postives = 113/239 (47.28%), Query Frame = 1
Query:    1 ANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRA-AQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGI-----DDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTT-SAVSLILRGSNDYMLDEMERALHDAICTVK 696
            A++ V+AV +V   N    V   +K I ++K  G +  D+  + G   +   +   G P R+  AKI  + F L   K  +   ++V+D  +++K+ + E  +  E   K+ K+G NV+L  K I     +D++L Y  +   + ++ + ++D+  I    G   V+        ++F +  LG               + + G       V+++ RGSN  +LDE ER+LHDA+C ++
Sbjct:  177 ASIAVDAVLSV--INPATAVNVNLKDIKLIKKLGGTIEDTELVQGLVFDQTASHTAGGPTRIQNAKIGLIQFCLSAPKTYMDNNIVVSDYSKMDKVIKEEPKLILEMCRKIQKSGCNVLLVQKSILRDAVNDLSLHYLAKLKILVIKDIERDDIEFICNTIGCQPVANI------DSFTADKLGKADLVEEVGTSDGKIVKVTGIPNPGKTVTVLCRGSNKLVLDEAERSLHDALCVIR 407          
BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: TCPD_CANGA (T-complex protein 1 subunit delta OS=Candida glabrata GN=CCT4 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.909e-18
Identity = 63/235 (26.81%), Postives = 109/235 (46.38%), Query Frame = 1
Query:   19 AVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALN-AFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGI-----DDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSA---VSLILRGSNDYMLDEMERALHDAICTVK 696
            AV AV    ++      +  I ++K  G +  D+  ++G  L        G P     AKI  + F +   K      ++V+D R+++KI + E        +K+ KA  NV+L  K I     +D+AL +  + G + ++ + +E++  ++K+ G   +S        E F    LGS              +   G K  +A   VS+I+RG+N  +LDE ER+LHDA+C ++
Sbjct:  175 AVDAVLSITEKDSKTVDLNDIRLVKKVGGTIGDTEMVDGVVLTQTVVKTAGGPTMKEKAKIGLIQFQISPPKPDTENNIVVSDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDLALHFLAKLGIMVIKDIEREEIEFLSKSLGCKPISDV------ELFTEDRLGSADLVEEIDSDGTKIVKFSGVKGVNAKPTVSVIIRGANSMILDETERSLHDALCVIR 403          
BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: TCPE_YEAST (T-complex protein 1 subunit epsilon OS=Saccharomyces cerevisiae GN=CCT5 PE=1 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 3.256e-18
Identity = 71/238 (29.83%), Postives = 116/238 (48.74%), Query Frame = 1
Query:    1 ANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAP------AKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAICTVK 696
            A + VEAV  V M   R +V + +  I +    G S  DS  +NG  L+   +   MP  V P       K+A L    +  K +   ++ ++   E +K++  E D  KE I+ + KAGA+V++   G DD A    ++    AVR V  +++ HIA +T   +V  F D+  ++    S +                ++I+ +K T  V+  +RGSN  ++DE ERALHD++C V+
Sbjct:  201 AEMAVEAVINV-MDKDRKDVDFDL--IKMQGRVGGSISDSKLINGVILDKDFSHPQMPKCVLPKEGSDGVKLAILTCPFEPPKPKTKHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGADVVICQWGFDDEANHLLLQNDLPAVRWVGGQELEHIAISTNGRIVPRFQDLSKDKLGTCSRI----YEQEFGTTKDRMLIIEQSKETKTVTCFVRGSNKMIVDEAERALHDSLCVVR 431          
BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: TCPH_ENCCU (T-complex protein 1 subunit eta OS=Encephalitozoon cuniculi GN=CCT7 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.252e-18
Identity = 60/238 (25.21%), Postives = 114/238 (47.90%), Query Frame = 1
Query:    1 ANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALN---AFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAICTVKRTL 705
            + ++V+AV+  K+ +         + I + K  G S  DS  +NG A      +   +  P R+   +I CL+  L+    +   ++ V    E +++   E  + + ++++++ +GANV+L++  I D A +YF + G     RV KED+  +  + G +++     +EG        LG+                 +G   TSA ++ILRG    +L+E+ R++HDA+C V+  L
Sbjct:  166 SRMIVDAVKQAKIDDA--------ESIGVKKVQGGSIGDSVAVNGIAFEKCFTYAGYEQQPKRILNPRILCLNVELEWKSERDNAEIRVGGVEEYQRVVDAEWAIIRRKLDEIISSGANVVLSSLSIGDYATQYFAKHGIFCAGRVSKEDLGRVVGSCGGSILGATDYLEGS-------LGACALFEERQLGKFRYNYFEG-GGTSACTMILRGPGQEVLEEIGRSVHDAVCVVRTAL 387          
BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: TCPD_YEAST (T-complex protein 1 subunit delta OS=Saccharomyces cerevisiae GN=CCT4 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.553e-18
Identity = 61/236 (25.85%), Postives = 112/236 (47.46%), Query Frame = 1
Query:   19 AVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALN--AFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGI-----DDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSA---VSLILRGSNDYMLDEMERALHDAICTVK 696
            AV +V   +        +  I ++K  G +  D+  ++G  L   A ++A G P R   AKI  + F +   K      ++V D R+++KI + E        +K+ KA  NV+L  K I     +D+AL +  +   + V+ + +E++  ++K  G   ++        E F    LGS              + + G +  +A   VS+++RG+N+ ++DE ER+LHDA+C ++
Sbjct:  174 AVDSVLKISDENSKNVDLNDIRLVKKVGGTIDDTEMIDGVVLTQTAIKSAGG-PTRKEKAKIGLIQFQISPPKPDTENNIIVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDLALHFLSKLNIMVVKDIEREEIEFLSKGLGCKPIADI------ELFTEDRLGSADLVEEIDSDGSKIVRVTGIRNNNARPTVSVVIRGANNMIIDETERSLHDALCVIR 402          
BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: TCPH_DICDI (T-complex protein 1 subunit eta OS=Dictyostelium discoideum GN=cct7 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17
Identity = 57/236 (24.15%), Postives = 111/236 (47.03%), Query Frame = 1
Query:    1 ANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNA---FRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAICTVKR 699
            + +VV+AVQ +       +    +  I I K  G    DS F+ G A      +   +  P  +   K+ CL+  L+    +   ++ ++DP + + +   E  +  +++E +  +G NV+L+   I D+A ++F +       RV  +D+R + +ATGA + +T +++  +      ++G+               +  G   T   ++ILRG  +  +DE ER+LHD+I  V+R
Sbjct:  176 SKMVVDAVQLL-------DDNIDLDMIGIKKESGGGLGDSQFIAGAAFKRTFFYAGFEQQPKHIKNPKVLCLNIELELKAEKDNAEIRISDPTKYQSLVNAEWKLFFDKLEAIHASGVNVVLSKLAIGDLATQFFADKNMFCAGRVPDDDIRRVCRATGAAIQNTTSNIIPD------VIGTCDLFEEVQVGGQRYNLFTGCTMTQTATIILRGGGEQFIDEAERSLHDSIMIVRR 398          
BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: TCPE_ENCCU (T-complex protein 1 subunit epsilon OS=Encephalitozoon cuniculi GN=CCT5 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17
Identity = 53/209 (25.36%), Postives = 106/209 (50.72%), Query Frame = 1
Query:   79 INILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAICTVKRTL 705
            INI    G+    +  + G  +N   +   M   V   +IA L    +  K++    +++++P+E +++ + E     E IE + ++G+N+++   G DD A    +E G  AVR V   ++  +A  TG ++V+ F D+E     +S L  +              I+++    + AV++++RG+ND +++E +R++ DA+C V+  L
Sbjct:  203 INIESKVGRDLSSTALIKGIVINKEFSHPQMKKEVKDGRIALLSCPFEPPKLKTKHSLVISNPKEYKELEEYEKKKFAEMIESIKRSGSNIVMCQWGFDDEANSLLMENGLPAVRWVGGHELELLAVHTGGSIVARFEDLE-----ESDLGKARVREESLGTENDKIIVVENEGCSKAVTILVRGANDLVIEEAKRSIRDALCAVRNIL 406          
BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: TCPB_MACFA (T-complex protein 1 subunit beta OS=Macaca fascicularis GN=CCT2 PE=2 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17
Identity = 66/234 (28.21%), Postives = 110/234 (47.01%), Query Frame = 1
Query:    7 LVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQL-GVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAICTVKRTL 705
            L VEAV  +K +         ++ I+I+K  G S  DSY   G+ L+  +     P R+  AKI   +  +   K+++ G +V V    ++ +I   E +  KE++E++LK G N  +  + I +   + F  AG +A+       +  +A  TG  + STF   E  +      LGS              I   G     A +++LRG+   +LDE ER+LHDA+C + +T+
Sbjct:  182 LAVEAVLRLKGSGN-------LEAIHIIKKLGGSLADSYLDEGFLLDK-KIGVNQPKRIENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFAGVERLALVTGGEIASTFDHPELVK------LGSCKLIEEVMIGEDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTV 401          
BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: TCPB_HUMAN (T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4)

HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17
Identity = 66/234 (28.21%), Postives = 110/234 (47.01%), Query Frame = 1
Query:    7 LVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQL-GVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAICTVKRTL 705
            L VEAV  +K +         ++ I+I+K  G S  DSY   G+ L+  +     P R+  AKI   +  +   K+++ G +V V    ++ +I   E +  KE++E++LK G N  +  + I +   + F  AG +A+       +  +A  TG  + STF   E  +      LGS              I   G     A +++LRG+   +LDE ER+LHDA+C + +T+
Sbjct:  182 LAVEAVLRLKGSGN-------LEAIHIIKKLGGSLADSYLDEGFLLDK-KIGVNQPKRIENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFAGVERLALVTGGEIASTFDHPELVK------LGSCKLIEEVMIGEDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTV 401          
BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: TCPB_RAT (T-complex protein 1 subunit beta OS=Rattus norvegicus GN=Cct2 PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17
Identity = 65/234 (27.78%), Postives = 110/234 (47.01%), Query Frame = 1
Query:    7 LVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQL-GVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAICTVKRTL 705
            L VEAV  +K +         ++ I+++K  G S  DSY   G+ L+  +     P R+  AKI   +  +   K+++ G +V V    ++ +I   E +  KE++E++LK G N  +  + I +   + F  AG +A+       +  +A  TG  + STF   E  +      LGS              I   G     A +++LRG+   +LDE ER+LHDA+C + +T+
Sbjct:  182 LAVEAVLRLKGSGN-------LEAIHVIKKLGGSLADSYLDEGFLLDK-KIGVNQPKRIENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFAGVERLALVTGGEIASTFDHPELVK------LGSCKLIEEVMIGEDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTV 401          
The following BLAST results are available for this feature:
BLAST of FC931561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
TCPD_DICDI1.461e-1825.52T-complex protein 1 subunit delta OS=Dictyostelium... [more]
TCPD_CANGA1.909e-1826.81T-complex protein 1 subunit delta OS=Candida glabr... [more]
TCPE_YEAST3.256e-1829.83T-complex protein 1 subunit epsilon OS=Saccharomyc... [more]
TCPH_ENCCU4.252e-1825.21T-complex protein 1 subunit eta OS=Encephalitozoon... [more]
TCPD_YEAST5.553e-1825.85T-complex protein 1 subunit delta OS=Saccharomyces... [more]
TCPH_DICDI1.237e-1724.15T-complex protein 1 subunit eta OS=Dictyostelium d... [more]
TCPE_ENCCU1.237e-1725.36T-complex protein 1 subunit epsilon OS=Encephalito... [more]
TCPB_MACFA1.237e-1728.21T-complex protein 1 subunit beta OS=Macaca fascicu... [more]
TCPB_HUMAN1.237e-1728.21T-complex protein 1 subunit beta OS=Homo sapiens G... [more]
TCPB_RAT1.616e-1727.78T-complex protein 1 subunit beta OS=Rattus norvegi... [more]

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Properties
Property NameValue
Genbank descriptionC34106E04EF PostHarvP1 Citrus clementina cDNA clone C34106E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931561 ID=FC931561; Name=FC931561; organism=Citrus clementina; type=EST; length=706bp
GCTAATTTGGTTGTAGAAGCAGTTCAAGCAGTAAAGATGACTAATCAACG
AGGTGAAGTCAAGTACCCAATCAAGGGGATCAATATTTTGAAAGCTCATG
GCAAAAGTGCCAGAGATAGCTACTTTCTAAATGGGTATGCTCTTAACGCT
TTTCGTGCTGCTCAAGGAATGCCTCTTAGAGTTGCCCCTGCAAAGATTGC
CTGTCTTGACTTTAATCTCCAGAAGACAAAAATGCAATTGGGTGTCCAAG
TCTTAGTCACCGATCCGAGAGAACTTGAGAAAATTCGTCAAAGAGAAGCT
GATATGACGAAGGAACGTATTGAGAAACTTCTGAAAGCTGGAGCCAATGT
TATTCTGACAACAAAAGGCATCGATGACATGGCACTGAAGTACTTTGTGG
AGGCTGGGGCTATTGCTGTTAGACGTGTTCGGAAGGAGGATATGCGACAC
ATTGCCAAGGCAACTGGTGCAACTATGGTTTCAACATTCGCTGACATGGA
AGGGGAGGAAACATTTGATTCGTCACTTCTTGGATCTGCTGATGAAGTGG
TAGAAGAGCGTGTTGCCGATGATGATGTGATTATGATAAAGGGGACTAAA
ACTACAAGTGCGGTTTCCTTGATACTTAGAGGAAGCAATGACTATATGCT
TGATGAGATGGAGAGAGCCCTGCATGATGCTATATGTACTGTCAAGAGGA
CCCTTG
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