FC931561

Overview
NameFC931561
Unique NameFC931561
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14336 contig Ccv1_Contig14336:640..1345. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: TCPB_MOUSE (T-complex protein 1 subunit beta OS=Mus musculus GN=Cct2 PE=1 SV=4)

HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17
Identity = 65/234 (27.78%), Postives = 110/234 (47.01%), Query Frame = 1
Query:    7 LVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQL-GVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAICTVKRTL 705
            L VEAV  +K +         ++ I+++K  G S  DSY   G+ L+  +     P R+  AKI   +  +   K+++ G +V V    ++ +I   E +  KE++E++LK G N  +  + I +   + F  AG +A+       +  +A  TG  + STF   E  +      LGS              I   G     A +++LRG+   +LDE ER+LHDA+C + +T+
Sbjct:  182 LAVEAVLRLKGSGN-------LEAIHVIKKLGGSLADSYLDEGFLLDK-KIGVNQPKRIENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFAGVERLALVTGGEIASTFDHPELVK------LGSCKLIEEVMIGEDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTV 401          
BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: TCPB_BOVIN (T-complex protein 1 subunit beta OS=Bos taurus GN=CCT2 PE=2 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 2.110e-17
Identity = 65/234 (27.78%), Postives = 110/234 (47.01%), Query Frame = 1
Query:    7 LVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQL-GVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAICTVKRTL 705
            L VEAV  +K +         ++ I+++K  G S  DSY   G+ L+  +     P R+  AKI   +  +   K+++ G +V V    ++ +I   E +  KE++E++LK G N  +  + I +   + F  AG +A+       +  +A  TG  + STF   E  +      LGS              I   G     A +++LRG+   +LDE ER+LHDA+C + +T+
Sbjct:  182 LAVEAVLRLKGSGN-------LEAIHVIKKLGGSLADSYLDEGFLLDK-KIGVNQPKRIENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFVGVERLALVTGGEIASTFDHPELVK------LGSCKLIEEVMIGEDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTV 401          
BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: TCPH_TETTH (T-complex protein 1 subunit eta (Fragment) OS=Tetrahymena thermophila PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.019e-17
Identity = 60/238 (25.21%), Postives = 116/238 (48.74%), Query Frame = 1
Query:    1 ANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALN---AFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAICTVKRTL 705
            + LVV+AV+ ++ TN   +    IK +      G S  DS+ ++G A     ++   +  P +    KI  L+  L+    +   ++ + +P + + I   E ++  E++ K++++GAN++L+   I D+A +YF +       RV  EDM+ + K+TGA + +T   +         +LG+               + K    + + ++ILRG  +  + E ER+L+DAI  V+R +
Sbjct:  117 SELVVQAVETLE-TNLLDKDLIGIKMVT-----GGSVTDSFLVSGVAFKKTFSYAGFEQQPKKFNNPKICLLNIELELKAEKENAEIRIENPDDYKSIVDAEWELIYEKLRKIVESGANIVLSKLPIGDLATQYFADRNIFCAGRVDAEDMKRVQKSTGAIVQTTVNGL------TEDVLGTCNQFEEVQIGAERYNLFKDCPHSKSATIILRGGAEQFIAEAERSLNDAIMIVRRCM 342          
BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: TCPE_SCHPO (T-complex protein 1 subunit epsilon OS=Schizosaccharomyces pombe GN=cct5 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.019e-17
Identity = 65/235 (27.66%), Postives = 116/235 (49.36%), Query Frame = 1
Query:    1 ANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAICTVKRTL 705
            AN+ V+AV +V    QR +V + +  I +    G S  D+  + G  ++   +   MP R+  AKIA L    +  K +   ++ +T   E E ++  E +  +E I+ +  AGAN+++   G DD A    ++    AVR V   ++  IA AT   +V  F D+  ++   + ++                ++I+    + AV++ +RGSN  ++DE +RALHDA+C V+  +
Sbjct:  188 ANIAVDAVLSVADL-QRKDVDFEL--IKVDGKVGGSVDDTKLVKGVVVDKDMSHPQMPHRIENAKIAILTCPFEPPKPKTKHKLDITSVSEFEALQAYEKEKFQEMIKHVKDAGANLVICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATNGRIVPRFEDLSSDKLGSAGIV----REVSFGTTRDKILVIEKCANSRAVTVFVRGSNKMIVDEAKRALHDALCVVRNLI 415          
BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: TCPB_DICDI (T-complex protein 1 subunit beta OS=Dictyostelium discoideum GN=cct2 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.019e-17
Identity = 61/236 (25.85%), Postives = 113/236 (47.88%), Query Frame = 1
Query:    1 ANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQL-GVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAICTVKRTL 705
            AN+VV+AV  +            +  I+I+K  G S R+SY   G+ L   +   G P R+   KI   +  +   K+++ G +V+V    EL K+   E +    + +K++  G N  +  + + ++  +YF E G +++     + +  +A  TGA +VSTF   E  +      +G+              I   G  +  A +++LRG+  ++L+E ER++HDA+C +  T+
Sbjct:  179 ANMVVDAVLRLNGNTN-------LDNIHIIKKSGGSLRESYLDEGFILEK-KIGVGCPKRLENPKILIANTAMDTDKIKIFGGKVVVDSMTELAKMEDAEKEKMLNKCKKIVDHGINCFVNRQLVYNLPEQYFAEHGVMSIEHADFDGIERLALVTGAEIVSTFDHPELVK------IGTCKLIEEVMIGEDKVIRFSGIPSGEACTIVLRGATSHILEEAERSIHDALCVLAVTV 400          
BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: TCPD_AEDTR (T-complex protein 1 subunit delta OS=Aedes triseriatus PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 58/238 (24.37%), Postives = 111/238 (46.64%), Query Frame = 1
Query:    1 ANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGI-----DDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTT-SAVSLILRGSNDYMLDEMERALHDAICTVK 696
            A + VEAV  +K+T    E    +K + I+++ G +  D+  ++G            P RV  AKI  + F +   K  +   V+V+D   ++++ + E       ++++ KAG NV+L  K I      D+A+ +  +   + V+ +  ED+  + K      +++      E   ++ L+                + + G +     VS+++RGSN  +L+E ER+LHDA+C V+
Sbjct:  177 APIAVEAV--LKVTEAGHESGVDLKNVKIIRSLGGTIDDTELVDGLVFTQRSCGVNGPKRVEKAKIGLIQFCISAPKTDMDHSVIVSDYAAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAVSDLAMHFLDKIKVMVVKDIEHEDIEFVCKTLNCRPIASLDHFLPEHLVNADLV------EEVSSGSSKFVKVTGIQNMGQTVSIVVRGSNKLVLEEAERSLHDALCVVR 406          
BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: TCPH_YEAST (T-complex protein 1 subunit eta OS=Saccharomyces cerevisiae GN=CCT7 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16
Identity = 57/214 (26.64%), Postives = 101/214 (47.20%), Query Frame = 1
Query:   73 KGINILKAHGKSARDSYFLNGYALN---AFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAICTVKRTL 705
            K I I K  G +  +S F+NG A     ++   +  P +    KI  L+  L+    +   +V V    + + I   E  +  E++ ++ + GAN++L+   I D+A ++F +       RV  +DM  + +A G ++ ST +D++ E       LG+               + +G       +L+LRG  + ++ E+ER+LHDAI  VKR L
Sbjct:  197 KLIGIKKIPGGAMEESLFINGVAFKKTFSYAGFEQQPKKFNNPKILSLNVELELKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSKLPIGDLATQFFADRNIFCAGRVSADDMNRVIQAVGGSIQSTTSDIKPEH------LGTCALFEEMQIGSERYNLFQGCPQAKTCTLLLRGGAEQVIAEVERSLHDAIMIVKRAL 404          
BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: TCPG_RAT (T-complex protein 1 subunit gamma OS=Rattus norvegicus GN=Cct3 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16
Identity = 65/235 (27.66%), Postives = 107/235 (45.53%), Query Frame = 1
Query:    4 NLVVEAVQAVKMT-NQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAICTVKRTL 705
            N+ ++AV+ V+   N R E+    K   + K  G    DS  L G  +N       M   +   +I  LD +L+  K +    + +T   +  +I Q E +  ++  E +++   +V++T KGI D+A  Y + A   A+RRVRK D   IA+A GA +VS       EE  +  +                   I   K   A +++LRG++  +L E+ER L DA+   +  L
Sbjct:  174 NIALDAVKTVQFEENGRKEIDIK-KYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGARIVS-----RPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVL 402          
BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: TCPG_BOVIN (T-complex protein 1 subunit gamma OS=Bos taurus GN=CCT3 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16
Identity = 65/235 (27.66%), Postives = 109/235 (46.38%), Query Frame = 1
Query:    4 NLVVEAVQAVKMT-NQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAICTVKRTL 705
            N+ ++AV+ V+   N R E+    K   + K  G    DS  L G  +N       M   +   +I  LD +L+  K +    + +T   +  +I Q E +  ++  E +++   +V++T KGI D+A  Y + A   A+RRVRK D   IA+A GA +VS   ++  E+    + L                  I   K   A +++LRG++  +L E+ER L DA+   +  L
Sbjct:  174 NIALDAVKTVQFEENGRKEIDIK-KYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDVGTGAGL-----LEIKKIGDEYFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVL 402          
BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: TCPG_PONAB (T-complex protein 1 subunit gamma OS=Pongo abelii GN=CCT3 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.980e-16
Identity = 65/235 (27.66%), Postives = 107/235 (45.53%), Query Frame = 1
Query:    4 NLVVEAVQAVKMT-NQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAICTVKRTL 705
            N+ ++AV+ V+   N R E+    K   + K  G    DS  L G  +N       M   +   +I  LD +L+  K +    + +T   +  +I Q E +  ++  E +++   +V++T KGI D+A  Y + A   A+RRVRK D   IA+A GA +VS       EE  +  +                   I   K   A +++LRG++  +L E+ER L DA+   +  L
Sbjct:  174 NIALDAVKMVQFEENGRKEIDIK-KYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVS-----RPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVL 402          
The following BLAST results are available for this feature:
BLAST of FC931561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
TCPB_MOUSE1.616e-1727.78T-complex protein 1 subunit beta OS=Mus musculus G... [more]
TCPB_BOVIN2.110e-1727.78T-complex protein 1 subunit beta OS=Bos taurus GN=... [more]
TCPH_TETTH8.019e-1725.21T-complex protein 1 subunit eta (Fragment) OS=Tetr... [more]
TCPE_SCHPO8.019e-1727.66T-complex protein 1 subunit epsilon OS=Schizosacch... [more]
TCPB_DICDI8.019e-1725.85T-complex protein 1 subunit beta OS=Dictyostelium ... [more]
TCPD_AEDTR1.786e-1624.37T-complex protein 1 subunit delta OS=Aedes triseri... [more]
TCPH_YEAST2.333e-1626.64T-complex protein 1 subunit eta OS=Saccharomyces c... [more]
TCPG_RAT2.333e-1627.66T-complex protein 1 subunit gamma OS=Rattus norveg... [more]
TCPG_BOVIN2.333e-1627.66T-complex protein 1 subunit gamma OS=Bos taurus GN... [more]
TCPG_PONAB3.980e-1627.66T-complex protein 1 subunit gamma OS=Pongo abelii ... [more]

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Properties
Property NameValue
Genbank descriptionC34106E04EF PostHarvP1 Citrus clementina cDNA clone C34106E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931561 ID=FC931561; Name=FC931561; organism=Citrus clementina; type=EST; length=706bp
GCTAATTTGGTTGTAGAAGCAGTTCAAGCAGTAAAGATGACTAATCAACG
AGGTGAAGTCAAGTACCCAATCAAGGGGATCAATATTTTGAAAGCTCATG
GCAAAAGTGCCAGAGATAGCTACTTTCTAAATGGGTATGCTCTTAACGCT
TTTCGTGCTGCTCAAGGAATGCCTCTTAGAGTTGCCCCTGCAAAGATTGC
CTGTCTTGACTTTAATCTCCAGAAGACAAAAATGCAATTGGGTGTCCAAG
TCTTAGTCACCGATCCGAGAGAACTTGAGAAAATTCGTCAAAGAGAAGCT
GATATGACGAAGGAACGTATTGAGAAACTTCTGAAAGCTGGAGCCAATGT
TATTCTGACAACAAAAGGCATCGATGACATGGCACTGAAGTACTTTGTGG
AGGCTGGGGCTATTGCTGTTAGACGTGTTCGGAAGGAGGATATGCGACAC
ATTGCCAAGGCAACTGGTGCAACTATGGTTTCAACATTCGCTGACATGGA
AGGGGAGGAAACATTTGATTCGTCACTTCTTGGATCTGCTGATGAAGTGG
TAGAAGAGCGTGTTGCCGATGATGATGTGATTATGATAAAGGGGACTAAA
ACTACAAGTGCGGTTTCCTTGATACTTAGAGGAAGCAATGACTATATGCT
TGATGAGATGGAGAGAGCCCTGCATGATGCTATATGTACTGTCAAGAGGA
CCCTTG
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