FC931561

Overview
NameFC931561
Unique NameFC931561
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: TCPG_SCHPO (T-complex protein 1 subunit gamma OS=Schizosaccharomyces pombe GN=cct3 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.505e-15
Identity = 58/232 (25.00%), Postives = 106/232 (45.69%), Query Frame = 1
Query:    4 NLVVEAVQAVKMTNQRGEVKYPIKGI-NILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAICTVK 696
            +L + AV+ V  T+  G ++  IK    + K  G     S  L+G  LN       M  R+   +I  LD  L+  K +    + ++   +  +I + E +  K   + ++    ++++T KG+ D+A  Y ++A   A+RR RK D   IA+A GA +V+   D+  ++      L                  + G K   A +++LRG +  +++E+ER L DA+   +
Sbjct:  172 HLALRAVRTVASTSN-GRMEIDIKRYARVEKVPGGEIESSCVLDGVMLNKDVTHPKMRRRIENPRIVLLDCPLEYRKGESQTNIEISKDTDWNRILEIEEEQVKRMCDYIIAVKPDLVITEKGVSDLAQHYLLKANITALRRTRKSDNNRIARACGANIVNRLEDLREKDVGTGCGL-----FYIDKLGDEYYTFLTGCKNPKACTILLRGPSKDIINEVERNLQDAMAVAR 397          
BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: TCPG_DICDI (T-complex protein 1 subunit gamma OS=Dictyostelium discoideum GN=cct3 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.505e-15
Identity = 57/228 (25.00%), Postives = 106/228 (46.49%), Query Frame = 1
Query:    4 NLVVEAVQAVKMTNQRGEVKYPIKGI-NILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAI 684
            NL ++AV  V +  + G  +  IK    + K  G    D   + G  LN       M   +   +I  LD +L+  K +    V +T+  +   + + E +  +   E ++K   +++ T KG+ D+A  +FV+ G   +RR++K +   IA+ +GAT+VS       +E  +S +                   ++  K   A +++LRG++  +L+E+ER L DA+
Sbjct:  172 NLALDAVMTVHIQEEDGRSEIDIKRYAKVEKIPGGDISDCRVIRGVMLNKDVTHPKMKRMIKNPRIVLLDCSLEYKKGESDTMVDITNEDDFSALLKIEEEYVQRICEDIIKLKPDLVFTEKGVSDLAQHFFVKKGITCLRRLKKSENNRIARISGATIVS-----RTDELQESDIGTGCGLFEIRKIGDEYFTFLEDCKEPKACTILLRGASKDILNEVERNLTDAL 394          
BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: TCPD_TAKRU (T-complex protein 1 subunit delta OS=Takifugu rubripes GN=cct4 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.505e-15
Identity = 55/213 (25.82%), Postives = 101/213 (47.42%), Query Frame = 1
Query:   79 INILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGI-----DDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIM-IKGTKTT-SAVSLILRGSNDYMLDEMERALHDAICTVK 696
            I I+K  G +  D   + G  L   R A     RV  AKI  + F L   K  +  Q++V+D  +++++ + E       ++++ KAG NV+   K I      D+AL +  +   + V+ + +ED+  I K  G   ++        + F   +LG+              ++ I G  +    VS+++RGSN  +++E ER++HDA+C ++
Sbjct:  205 IKIIKKLGGTIDDCELVEGLVLTQ-RVANSSVSRVEKAKIGLIQFCLSPPKTDMDNQIVVSDYTQMDRVLREERAYILNMVKQIKKAGCNVLFIQKSILRDALSDLALHFLNKMKIMVVKDIEREDIEFICKTIGTKPIAHI------DHFTPEMLGTAELAEEVSLDGSGKLVKITGCASPGKTVSIVVRGSNKLVIEEAERSIHDALCVIR 410          
BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: TCPD_PONAB (T-complex protein 1 subunit delta OS=Pongo abelii GN=CCT4 PE=2 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 7.505e-15
Identity = 54/216 (25.00%), Postives = 105/216 (48.61%), Query Frame = 1
Query:   70 IKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGI-----DDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIM-IKGTKTTS-AVSLILRGSNDYMLDEMERALHDAICTVK 696
            ++ I I+K  G +  D   + G  L    +  G+  RV  AKI  + F L   K  +  Q++V+D  +++++ + E       ++++ K G NV+L  K I      D+AL +  +   + ++ + +ED+  I K  G   V+        + F + +LGS              ++ I G  +    V++++RGSN  +++E ER++HDA+C ++
Sbjct:  205 LRDIKIVKKLGGTIDDCELVEGLVLTQKVSNSGIT-RVEKAKIGLIQFCLSAPKTDMDNQIVVSDYAQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVIKDIEREDIEFICKTIGTKPVAHI------DQFTADMLGSAELAEEVNLNGSGKLLKITGCASPGKTVTIVVRGSNKLVIEEAERSIHDALCVIR 413          
BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: TCPD_HUMAN (T-complex protein 1 subunit delta OS=Homo sapiens GN=CCT4 PE=1 SV=4)

HSP 1 Score: 80.8777 bits (198), Expect = 7.505e-15
Identity = 54/216 (25.00%), Postives = 105/216 (48.61%), Query Frame = 1
Query:   70 IKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGI-----DDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIM-IKGTKTTS-AVSLILRGSNDYMLDEMERALHDAICTVK 696
            ++ I I+K  G +  D   + G  L    +  G+  RV  AKI  + F L   K  +  Q++V+D  +++++ + E       ++++ K G NV+L  K I      D+AL +  +   + ++ + +ED+  I K  G   V+        + F + +LGS              ++ I G  +    V++++RGSN  +++E ER++HDA+C ++
Sbjct:  205 LRDIKIVKKLGGTIDDCELVEGLVLTQKVSNSGIT-RVEKAKIGLIQFCLSAPKTDMDNQIVVSDYAQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVIKDIEREDIEFICKTIGTKPVAHI------DQFTADMLGSAELAEEVNLNGSGKLLKITGCASPGKTVTIVVRGSNKLVIEEAERSIHDALCVIR 413          
BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: TCPB_CAEEL (T-complex protein 1 subunit beta OS=Caenorhabditis elegans GN=cct-2 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.505e-15
Identity = 62/232 (26.72%), Postives = 105/232 (45.26%), Query Frame = 1
Query:    1 ANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQL-GVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAICTV 693
            A L V+AV  +K +         +  I I+K  G S  +SY   G+ L         P RV  AKI   +  +   K+++ G +V V    ++ ++   E    KE+++K+L    NV +  + I +   + F +A  +A+     E +  +A   G  +VSTF      ++  ++  GS              +   G K   A S++LRG+   +LDE ER+LHDA+C +
Sbjct:  174 AQLAVDAVLRLKGSGN-------LDAIQIIKKLGGSMNESYLDEGFLLEKL-PGMFQPRRVEKAKILIANTPMDTDKVKVFGSRVRVDGVAKVAELEAAEKLKMKEKVDKILAHNCNVFINRQLIYNYPEQLFADAKVMAIEHADFEGIERLALVLGGEIVSTF------DSPQTAQFGSCDLIEEIMIGEDRLLRFSGVKLGEACSVVLRGATQQILDESERSLHDALCVL 391          
BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: TCPG_YEAST (T-complex protein 1 subunit gamma OS=Saccharomyces cerevisiae GN=CCT3 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.280e-14
Identity = 57/239 (23.85%), Postives = 107/239 (44.77%), Query Frame = 1
Query:    7 LVVEAVQAVKMT---NQRGEVKYPI---KGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAICTVKRTL 705
            L ++AV+ V+        GE  + I   + + + K  G    DS  L G  LN       M   +   ++  LD  L+  K +    + +    +  +I Q E +  +   E++L     +++T KG+ D+A  Y ++ G   +RRV+K D   IA+ TGAT+V+   D++     +S +  +                +   K   A +++LRG +  +L+E++R L DA+   +  +
Sbjct:  174 LALDAVKTVRKDLGQTVEGEPNFEIDIKRYVRVEKIPGGDVLDSRVLKGVLLNKDVVHPKMSRHIENPRVVLLDCPLEYKKGESQTNIEIEKEEDWNRILQIEEEQVQLMCEQILAVRPTLVITEKGVSDLAQHYLLKGGCSVLRRVKKSDNNRIARVTGATIVNRVEDLK-----ESDVGTNCGLFKVEMIGDEYFSFLDNCKEPKACTIMLRGGSKDILNEIDRNLQDAMAVARNVM 407          
BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: TCPG_THAWE (T-complex protein 1 subunit gamma OS=Thalassiosira weissflogii PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.672e-14
Identity = 55/205 (26.83%), Postives = 93/205 (45.37%), Query Frame = 1
Query:   91 KAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAICTVKRTL 705
            K  G    D   L+G   N       M  R+   +I  LD  L+  K +    V +TD  +   + + E +  +    +++    ++++T KG+ D+A  YF +A   A RR+RK D   +A+ATGAT+VS       +E  +S +                    +  K   A ++ILRG +  +L+E+ER L DA+  V+  +
Sbjct:  218 KIPGGEISDCAVLSGVMFNKDVTHSKMRRRIENPRILLLDTPLEYKKGESQTNVEITDEEDWNTLLKMEEEYVENMCMEIIAFKPDIVITEKGVSDLAQHYFAKANITAFRRLRKTDNNRVARATGATIVS-----RTDEIRESDIGTGCGLFEMRKIGEEYFAFFEECKDPKACTIILRGGSKDVLNEIERNLTDAMQVVRNVV 417          
BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: TCPE_PONAB (T-complex protein 1 subunit epsilon OS=Pongo abelii GN=CCT5 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.672e-14
Identity = 59/235 (25.11%), Postives = 115/235 (48.94%), Query Frame = 1
Query:    1 ANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAICTVKRTL 705
            A + V AV  V    +R +V + +  I +    G    D+  + G  ++   +   MP +V  AKIA L    +  K +   ++ VT   + + +++ E +  +E I+++ + GAN+ +   G DD A    ++    AVR V   ++  IA ATG  +V  F+++  E+   + L+                ++I+  K + AV++ +RG N  +++E +R+LHDA+C ++  +
Sbjct:  186 AEIAVNAVLTVADMERR-DVDFEL--IKVEGKVGGRLEDTKLIKGVIVDKDFSHPRMPKKVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLV----QEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLI 413          
BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: TCPE_MACFA (T-complex protein 1 subunit epsilon OS=Macaca fascicularis GN=CCT5 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.672e-14
Identity = 59/235 (25.11%), Postives = 115/235 (48.94%), Query Frame = 1
Query:    1 ANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAICTVKRTL 705
            A + V AV  V    +R +V + +  I +    G    D+  + G  ++   +   MP +V  AKIA L    +  K +   ++ VT   + + +++ E +  +E I+++ + GAN+ +   G DD A    ++    AVR V   ++  IA ATG  +V  F+++  E+   + L+                ++I+  K + AV++ +RG N  +++E +R+LHDA+C ++  +
Sbjct:  186 AEIAVNAVLTVADMERR-DVDFEL--IKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKKVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLV----QEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLI 413          
The following BLAST results are available for this feature:
BLAST of FC931561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
TCPG_SCHPO7.505e-1525.00T-complex protein 1 subunit gamma OS=Schizosacchar... [more]
TCPG_DICDI7.505e-1525.00T-complex protein 1 subunit gamma OS=Dictyostelium... [more]
TCPD_TAKRU7.505e-1525.82T-complex protein 1 subunit delta OS=Takifugu rubr... [more]
TCPD_PONAB7.505e-1525.00T-complex protein 1 subunit delta OS=Pongo abelii ... [more]
TCPD_HUMAN7.505e-1525.00T-complex protein 1 subunit delta OS=Homo sapiens ... [more]
TCPB_CAEEL7.505e-1526.72T-complex protein 1 subunit beta OS=Caenorhabditis... [more]
TCPG_YEAST1.280e-1423.85T-complex protein 1 subunit gamma OS=Saccharomyces... [more]
TCPG_THAWE1.672e-1426.83T-complex protein 1 subunit gamma OS=Thalassiosira... [more]
TCPE_PONAB1.672e-1425.11T-complex protein 1 subunit epsilon OS=Pongo abeli... [more]
TCPE_MACFA1.672e-1425.11T-complex protein 1 subunit epsilon OS=Macaca fasc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34106E04EF PostHarvP1 Citrus clementina cDNA clone C34106E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931561 ID=FC931561; Name=FC931561; organism=Citrus clementina; type=EST; length=706bp
GCTAATTTGGTTGTAGAAGCAGTTCAAGCAGTAAAGATGACTAATCAACG
AGGTGAAGTCAAGTACCCAATCAAGGGGATCAATATTTTGAAAGCTCATG
GCAAAAGTGCCAGAGATAGCTACTTTCTAAATGGGTATGCTCTTAACGCT
TTTCGTGCTGCTCAAGGAATGCCTCTTAGAGTTGCCCCTGCAAAGATTGC
CTGTCTTGACTTTAATCTCCAGAAGACAAAAATGCAATTGGGTGTCCAAG
TCTTAGTCACCGATCCGAGAGAACTTGAGAAAATTCGTCAAAGAGAAGCT
GATATGACGAAGGAACGTATTGAGAAACTTCTGAAAGCTGGAGCCAATGT
TATTCTGACAACAAAAGGCATCGATGACATGGCACTGAAGTACTTTGTGG
AGGCTGGGGCTATTGCTGTTAGACGTGTTCGGAAGGAGGATATGCGACAC
ATTGCCAAGGCAACTGGTGCAACTATGGTTTCAACATTCGCTGACATGGA
AGGGGAGGAAACATTTGATTCGTCACTTCTTGGATCTGCTGATGAAGTGG
TAGAAGAGCGTGTTGCCGATGATGATGTGATTATGATAAAGGGGACTAAA
ACTACAAGTGCGGTTTCCTTGATACTTAGAGGAAGCAATGACTATATGCT
TGATGAGATGGAGAGAGCCCTGCATGATGCTATATGTACTGTCAAGAGGA
CCCTTG
back to top