FC931562

Overview
NameFC931562
Unique NameFC931562
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15352 contig Ccv1_Contig15352:1..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931562 vs. ExPASy Swiss-Prot
Match: THIM_PONAB (3-ketoacyl-CoA thiolase, mitochondrial OS=Pongo abelii GN=ACAA2 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.655e-19
Identity = 59/168 (35.12%), Postives = 83/168 (49.40%), Query Frame = 1
Query:  142 RDVCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAP-ARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEHI 642
            R V +V   RTP G + G L   +AT L   A +AAL    V P  V  V  GNVL ++      AR   L  GIP      T+N++C SG ++I+   Q I +   +V++ GG ESMS AP  +   R G++LG D      L+D LW    D  +     + AE++
Sbjct:    5 RGVFVVAAKRTPFGAYGGLLKDFTATDLSEFAAKAALSAGKVSPETVDSVIMGNVLQSSSDAIYLARHVGLRVGIPKETPALTINRLCGSGFQSIVNGCQEICVKEAEVVLCGGTESMSQAPYCVRTVRFGTKLGSDI----KLEDSLWVSLTDQHVQLPIAMTAENL 168          
BLAST of FC931562 vs. ExPASy Swiss-Prot
Match: THIM_MOUSE (3-ketoacyl-CoA thiolase, mitochondrial OS=Mus musculus GN=Acaa2 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.467e-19
Identity = 58/162 (35.80%), Postives = 80/162 (49.38%), Query Frame = 1
Query:  142 RDVCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAP-ARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAE 624
            R V IV   RTP G + G L   SAT L   A  AAL    V P  +  V  GNV+ ++   A  AR   L  G+P      T+N++C SG ++I+   Q I     +V++ GG ESMS +P  +   R G++ G D  ++  L  GL D +    MG  AE
Sbjct:    5 RGVFIVAAKRTPFGAYGGLLKDFSATDLTEFAARAALSAGKVPPETIDSVIVGNVMQSSSDAAYLARHVGLRVGVPTETGALTLNRLCGSGFQSIVSGCQEICSKDAEVVLCGGTESMSQSPYCVRNVRFGTKFGLDLKLEDTLWAGLTDQHVKLPMGMTAE 166          
BLAST of FC931562 vs. ExPASy Swiss-Prot
Match: THIM_BOVIN (3-ketoacyl-CoA thiolase, mitochondrial OS=Bos taurus GN=ACAA2 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.529e-19
Identity = 60/178 (33.71%), Postives = 86/178 (48.31%), Query Frame = 1
Query:  142 RDVCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAP-ARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAE-LCAEHIX*QGDQDDF 669
            R V IV   RTP G + G L   + T +   A  AAL    V P  V  V  GNV+ ++      AR   L  GIP      T+N++C SG ++I+   Q I    ++V++ GG ESMS AP  +   R G++LG +  ++  L  GL D +    M   AE L  +H   + D D +
Sbjct:    5 RGVFIVAAKRTPFGAYGGLLKDFTPTDMAEFAARAALSAGRVSPETVDSVVVGNVMQSSSDAIYLARHVGLRVGIPKETPAITINRLCGSGFQSIVSGCQEICSRDSEVVLCGGTESMSQAPYCVRNIRFGTKLGSELKLEDTLWTGLTDTHVQMPMAITAENLAVKHQISREDCDRY 182          
BLAST of FC931562 vs. ExPASy Swiss-Prot
Match: THIM_RAT (3-ketoacyl-CoA thiolase, mitochondrial OS=Rattus norvegicus GN=Acaa2 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.725e-19
Identity = 57/162 (35.19%), Postives = 80/162 (49.38%), Query Frame = 1
Query:  142 RDVCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAP-ARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAE 624
            R V IV   RTP G + G L   +AT L   A  AAL    V P  +  V  GNV+ ++   A  AR   L  G+P      T+N++C SG ++I+   Q I     +V++ GG ESMS +P  +   R G++ G D  ++  L  GL D +    MG  AE
Sbjct:    5 RGVFIVAAKRTPFGAYGGLLKDFTATDLTEFAARAALSAGKVPPETIDSVIVGNVMQSSSDAAYLARHVGLRVGVPTETGALTLNRLCGSGFQSIVSGCQEICSKDAEVVLCGGTESMSQSPYSVRNVRFGTKFGLDLKLEDTLWAGLTDQHVKLPMGMTAE 166          
BLAST of FC931562 vs. ExPASy Swiss-Prot
Match: THL_CLODI (Acetyl-CoA acetyltransferase (Fragment) OS=Clostridium difficile GN=thi PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.485e-17
Identity = 46/93 (49.46%), Postives = 59/93 (63.44%), Query Frame = 1
Query:  142 RDVCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKA 420
            R+V I   ART +G F G   S+SA +LG  A + A+KRAN+ P ++ E   G VL+A LGQ  ARQ ALGAGIP      T+N VC SGL++
Sbjct:    2 REVVIASAARTAVGSFGGAFKSVSAVELGVTAAKEAIKRANITPDMIDESLLGGVLTAGLGQNIARQIALGAGIPVEKPAMTINIVCGSGLRS 94          
BLAST of FC931562 vs. ExPASy Swiss-Prot
Match: THIK_ENCCU (3-ketoacyl-CoA thiolase, peroxisomal OS=Encephalitozoon cuniculi GN=FOX3 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.104e-16
Identity = 49/137 (35.77%), Postives = 78/137 (56.93%), Query Frame = 1
Query:  133 IKPRDVCIVGVARTPMG-GFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSN--APKYLAEARKGS 534
            I   DV +VG  RTP+G    G L SL   +L + AI   +++  +DP L++EV  G+ LS+  G   AR   L AG+P       +N++C SGL+++ L ++ I+ G  ++ +AGG ESM++   PK    +R G+
Sbjct:    2 ISHEDVVVVGALRTPIGRATRGKLRSLRNDELVTAAIRGIIEKTGIDPRLIEEVILGHCLSSMEGNVAARMGVLRAGVPVETPVMIINRLCGSGLESVGLIAEKIRSGRIEIGLAGGFESMTSYGLPKEYTLSRGGA 138          
BLAST of FC931562 vs. ExPASy Swiss-Prot
Match: PCAF_PSEAE (Beta-ketoadipyl-CoA thiolase OS=Pseudomonas aeruginosa GN=pcaF PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.747e-16
Identity = 53/129 (41.09%), Postives = 79/129 (61.24%), Query Frame = 1
Query:  142 RDVCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSANL-GQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEA 522
            R+V I    RTP+G F G+LS++ A  L ++ ++A ++R   VD S + EVF G    A    +  AR A L AG+P SV   T+N++CASG+ AI  A ++I  G  ++ +AGG+ESMS AP  + +A
Sbjct:    3 REVFICDAVRTPIGRFGGSLSAVRADDLAAVPLKALVERNPGVDWSALDEVFLGCANQAGEDNRNVARMALLLAGLPESVPGVTLNRLCASGMDAIGTAFRAIACGEMELAIAGGVESMSRAPYVMGKA 131          
BLAST of FC931562 vs. ExPASy Swiss-Prot
Match: PCAF_PSESB (Beta-ketoadipyl-CoA thiolase OS=Pseudomonas sp. (strain B13) GN=pcaF PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.121e-16
Identity = 50/129 (38.76%), Postives = 81/129 (62.79%), Query Frame = 1
Query:  142 RDVCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSANL-GQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEA 522
            R+V I    RTP+G F G+L+++ A  L ++ ++A ++R   VD S + EV+ G    A    +  AR A L AG+P+SV   T+N++CASG+ A+  A ++I  G  ++++AGG+ESMS AP  + +A
Sbjct:    3 REVYICDAVRTPIGRFGGSLAAVRADDLAAVPVKALVERNPQVDWSQLDEVYLGCANQAGEDNRNVARMALLLAGLPDSVPGVTLNRLCASGMDAVGTAFRAIASGEAELVIAGGVESMSRAPYVMGKA 131          
BLAST of FC931562 vs. ExPASy Swiss-Prot
Match: THIKA_CANTR (3-ketoacyl-CoA thiolase A, peroxisomal OS=Candida tropicalis PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.364e-15
Identity = 51/134 (38.06%), Postives = 76/134 (56.72%), Query Frame = 1
Query:  103 QMAPAAASDSIK--PRDVCIVGVARTPMG-GFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMS 495
            Q+ P A    ++  P DV IV   RT +G GF G+  S+ +  + +  ++  +K+ N+DPSL+++V  GNVL+   G    R A L AGIP +     VN+ C+SGL AI   +  I+ G  +  +AGG ESMS
Sbjct:   10 QLKPNAKQSILQKNPDDVVIVAAYRTAIGKGFKGSFRSVRSEFILTEFLKEFIKKTNIDPSLIEDVAIGNVLNQAAGATEHRGACLAAGIPYTAAFIAVNRFCSSGLMAISDIANKIKTGEIECGLAGGAESMS 143          
BLAST of FC931562 vs. ExPASy Swiss-Prot
Match: PAAJ_ECOLI (Beta-ketoadipyl-CoA thiolase OS=Escherichia coli (strain K12) GN=paaJ PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.364e-15
Identity = 49/129 (37.98%), Postives = 76/129 (58.91%), Query Frame = 1
Query:  142 RDVCIVGVARTPMGGFLGTLSSLSATKLGSIAI-EAALKRANVDPSLVQEVFFGNVLSANL-GQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEA 522
            R+  I    RTP+G + G LSS+ A  L +I + E  ++   +D   + +V  G    A    +  AR A L AG+P SV  TT+N++C SGL A+  A+++I+ G  D+++AGG+ESMS AP  + +A
Sbjct:    2 REAFICDGIRTPIGRYGGALSSVRADDLAAIPLRELLVRNPRLDAECIDDVILGCANQAGEDNRNVARMATLLAGLPQSVSGTTINRLCGSGLDALGFAARAIKAGDGDLLIAGGVESMSRAPFVMGKA 130          
The following BLAST results are available for this feature:
BLAST of FC931562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
THIM_PONAB2.655e-1935.123-ketoacyl-CoA thiolase, mitochondrial OS=Pongo ab... [more]
THIM_MOUSE3.467e-1935.803-ketoacyl-CoA thiolase, mitochondrial OS=Mus musc... [more]
THIM_BOVIN4.529e-1933.713-ketoacyl-CoA thiolase, mitochondrial OS=Bos taur... [more]
THIM_RAT7.725e-1935.193-ketoacyl-CoA thiolase, mitochondrial OS=Rattus n... [more]
THL_CLODI2.485e-1749.46Acetyl-CoA acetyltransferase (Fragment) OS=Clostri... [more]
THIK_ENCCU2.104e-1635.773-ketoacyl-CoA thiolase, peroxisomal OS=Encephalit... [more]
PCAF_PSEAE2.747e-1641.09Beta-ketoadipyl-CoA thiolase OS=Pseudomonas aerugi... [more]
PCAF_PSESB6.121e-1638.76Beta-ketoadipyl-CoA thiolase OS=Pseudomonas sp. (s... [more]
THIKA_CANTR1.364e-1538.063-ketoacyl-CoA thiolase A, peroxisomal OS=Candida ... [more]
PAAJ_ECOLI1.364e-1537.98Beta-ketoadipyl-CoA thiolase OS=Escherichia coli (... [more]

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Properties
Property NameValue
Genbank descriptionC34106E05EF PostHarvP1 Citrus clementina cDNA clone C34106E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931562 ID=FC931562; Name=FC931562; organism=Citrus clementina; type=EST; length=669bp
ATTTCCTCAGCACGACATTTCTGCGCTTCCACCCGCAAAAACCATCTCCT
CCTCACGTGATCCACACTCACTCTGAATCTCGCAGATCGTGATTGGCATT
GACAAATGGCTCCAGCGGCAGCATCTGATTCGATAAAGCCTAGAGATGTT
TGTATTGTCGGGGTTGCTCGTACACCAATGGGTGGATTTCTTGGTACTCT
ATCTTCCTTATCTGCTACCAAGCTTGGATCTATCGCTATTGAAGCTGCTC
TTAAGAGAGCAAATGTTGATCCATCACTTGTACAAGAAGTTTTCTTTGGT
AATGTTCTCAGTGCAAATCTAGGACAGGCTCCTGCTAGACAGGCTGCATT
GGGTGCAGGAATTCCGAATTCAGTGGTCTGTACTACTGTTAACAAAGTTT
GTGCATCAGGGCTGAAAGCTATAATGCTTGCATCACAGAGTATCCAGTTG
GGGATCAATGATGTCATTGTGGCTGGAGGAATGGAAAGCATGTCTAACGC
ACCTAAATATTTGGCAGAAGCGAGAAAGGGGTCTCGACTTGGACATGATT
CTCTGGTTGATGGAATGCTTAAAGATGGATTATGGGATGTTTATAATGAT
TGTAGCATGGGAACTTGTGCTGAACTTTGTGCTGAACACATTNCATAACA
GGGAGATCAGGATGACTTT
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