FC931562

Overview
NameFC931562
Unique NameFC931562
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931562 vs. ExPASy Swiss-Prot
Match: PCAF_PSEPU (Beta-ketoadipyl-CoA thiolase OS=Pseudomonas putida GN=pcaF PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.781e-15
Identity = 52/132 (39.39%), Postives = 76/132 (57.58%), Query Frame = 1
Query:  142 RDVCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALK-RANVDPSLVQEVFFGNVLSANL-GQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKG 531
            RDV I    RTP+G F G L+ + A  L ++ ++A ++    V    V EVFFG    A    +  AR A L AG+P S+   T+N++CASG+ AI  A ++I  G  ++ +AGG+ESMS AP  + +A  G
Sbjct:    2 RDVFICDAIRTPIGRFGGALAGVRADDLAAVPLKALIEPNPAVQWDQVDEVFFGCANQAGEDNRNVARMALLLAGLPESIPGVTLNRLCASGMDAIGTAFRAIASGEMELAIAGGVESMSRAPFVMGKAESG 133          
BLAST of FC931562 vs. ExPASy Swiss-Prot
Match: PCAF_ACIAD (Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. (strain ADP1) GN=pcaF PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.326e-15
Identity = 61/179 (34.08%), Postives = 97/179 (54.19%), Query Frame = 1
Query:  154 IVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSANL-GQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEAR----KGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEHIX*Q-GDQDDF 669
            IV   RTP G + G L+++ A  LG+I I A ++R  +V+ + V +V +G    A    +   R +AL AG+P  V  TTVN++C S L AI +A+++I+ G   +I+AGG+ESMS AP  + ++     +  ++   ++    +   L  +Y   +M   AE  AE    Q  DQD F
Sbjct:    6 IVDAIRTPFGRYAGGLAAVRADDLGAIPIAALIERNPSVNWAQVDDVIYGCANQAGEDNRNVGRMSALLAGLPVEVPATTVNRLCGSSLDAIAMAARAIKAGEAHLIIAGGVESMSRAPYVMGKSEGAFGRTQKIEDTTMGWRFINPKLKAMYGVDTMPQTAENVAEQFGIQREDQDQF 184          
BLAST of FC931562 vs. ExPASy Swiss-Prot
Match: CATF_ACIAD (Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. (strain ADP1) GN=catF PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.326e-15
Identity = 61/179 (34.08%), Postives = 97/179 (54.19%), Query Frame = 1
Query:  154 IVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSANL-GQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEAR----KGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEHIX*Q-GDQDDF 669
            IV   RTP G + G L+++ A  LG+I I A ++R  +V+ + V +V +G    A    +   R +AL AG+P  V  TTVN++C S L AI +A+++I+ G   +I+AGG+ESMS AP  + ++     +  ++   ++    +   L  +Y   +M   AE  AE    Q  DQD F
Sbjct:    6 IVDAIRTPFGRYAGGLAAVRADDLGAIPIAALIERNPSVNWAQVDDVIYGCANQAGEDNRNVGRMSALLAGLPVEVPATTVNRLCGSSLDAIAMAARAIKAGEAHLIIAGGVESMSRAPYVMGKSEGAFGRTQKIEDTTMGWRFINPKLKAMYGVDTMPQTAENVAEQFGIQREDQDQF 184          
BLAST of FC931562 vs. ExPASy Swiss-Prot
Match: THIKB_CANTR (3-ketoacyl-CoA thiolase B, peroxisomal OS=Candida tropicalis PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.038e-15
Identity = 50/134 (37.31%), Postives = 76/134 (56.72%), Query Frame = 1
Query:  103 QMAPAAASDSIK--PRDVCIVGVARTPMG-GFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMS 495
            Q+ P A    ++  P DV IV   RT +G GF G+  ++ +  + +  ++  +K+ N+DPSL+++V  GNVL+   G    R A L AGIP +     VN+ C+SGL AI   +  I+ G  +  +AGG ESMS
Sbjct:   10 QLKPNAKQSILQKNPDDVVIVAAYRTAIGKGFKGSFRNVHSEFILTEFLKEFIKKTNIDPSLIEDVAIGNVLNQAAGATEHRGACLAAGIPYTAAFIAVNRFCSSGLMAISDIANKIKTGEIECGLAGGAESMS 143          
BLAST of FC931562 vs. ExPASy Swiss-Prot
Match: PAAJ_ECOLX (Beta-ketoadipyl-CoA thiolase OS=Escherichia coli GN=paaJ PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.967e-15
Identity = 48/129 (37.21%), Postives = 75/129 (58.14%), Query Frame = 1
Query:  142 RDVCIVGVARTPMGGFLGTLSSLSATKLGSIAI-EAALKRANVDPSLVQEVFFGNVLSANL-GQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEA 522
            R+  I    RTP+G + G LS + A  L +I + E  ++   +D   + +V  G    A    +  AR A L AG+P SV  TT+N++C SGL A+  A+++I+ G  D+++AGG+ESMS AP  + +A
Sbjct:    2 REAFICDGIRTPIGRYGGALSGVRADDLAAIPLRELLVRNPRLDAECIDDVILGCANQAGEDNRNVARMATLLAGLPQSVSGTTINRLCGSGLDALGFAARAIKAGDGDLLIAGGVESMSRAPFVMGKA 130          
BLAST of FC931562 vs. ExPASy Swiss-Prot
Match: FADA_MARAV (3-ketoacyl-CoA thiolase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=fadA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.571e-14
Identity = 50/128 (39.06%), Postives = 71/128 (55.47%), Query Frame = 1
Query:  130 SIKPRDVCIVGVARTPMGGFL-GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP 504
            S+ PRDV +V   RTPMG    G   ++ A  L +  IEA  +R   +DP  V++V +G V  +   G   ARQ +L   IP+     TVN++C S + AI  A+Q+IQ G  DV + GG+E M + P
Sbjct:    2 SLNPRDVVVVDCVRTPMGRAKNGCFRNVRAETLSAALIEALFERNPKLDPKEVEDVIWGCVNQTKEQGFNVARQISLLTRIPHESAAQTVNRLCGSAMSAIHTAAQAIQTGNGDVFLVGGVEHMGHVP 129          
BLAST of FC931562 vs. ExPASy Swiss-Prot
Match: THIK_YARLI (3-ketoacyl-CoA thiolase, peroxisomal OS=Yarrowia lipolytica GN=POT1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.386e-14
Identity = 49/133 (36.84%), Postives = 71/133 (53.38%), Query Frame = 1
Query:  112 PAAASDSI---KPRDVCIVGVARTP-MGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSN 498
            PA   D+I    P DV I    RT    G  G     S+++L +  +E  +K + +DP L+ +V  GNVL+A  G    R A L AGIP +V    +N+ C+SGL A+   +  I+ G  D+ +  G+ESMSN
Sbjct:   15 PAKGLDAITSKNPDDVVITAAYRTAHTKGGKGLFKDTSSSELLASLLEGLVKESKIDPKLIGDVVCGNVLAAGAGATEHRAACLVAGIPETVPFVALNRQCSSGLMAVNDVANKIRAGQIDIGIGCGVESMSN 147          
BLAST of FC931562 vs. ExPASy Swiss-Prot
Match: FADA_AERS4 (3-ketoacyl-CoA thiolase OS=Aeromonas salmonicida (strain A449) GN=fadA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.729e-14
Identity = 49/128 (38.28%), Postives = 72/128 (56.25%), Query Frame = 1
Query:  142 RDVCIVGVARTPMGGFLG------TLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP 504
            +DV IV   RTPMG   G          LSA  + SI     L+  N+DP+ ++++++G V      G   AR AAL AGIP  V   TVN++C S ++A+  AS++IQ+G  D+ + GG+E M + P
Sbjct:    2 KDVVIVDCIRTPMGRSKGGAFRNVRAEDLSAHLMSSIL----LRNPNLDPNEIEDIYWGCVQQTLEQGFNIARNAALLAGIPKQVGAVTVNRLCGSSMQALHDASRAIQVGDGDIFIIGGVEHMGHVP 125          
BLAST of FC931562 vs. ExPASy Swiss-Prot
Match: FADA_AERHH (3-ketoacyl-CoA thiolase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=fadA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.482e-14
Identity = 47/124 (37.90%), Postives = 74/124 (59.68%), Query Frame = 1
Query:  142 RDVCIVGVARTPMGGFLG-TLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP 504
            +DV IV   RTPMG   G    ++ A  L +  +++ L R  N+DP+ ++++++G V      G   AR AAL AGIP  V   TVN++C S ++A+  AS++IQ+G  D+ + GG+E M + P
Sbjct:    2 KDVVIVDCIRTPMGRSKGGAFRNVRAEDLSAHLMKSILLRNPNLDPNEIEDIYWGCVQQTLEQGFNIARNAALLAGIPKQVGAVTVNRLCGSSMQALHDASRAIQVGDGDIFIIGGVEHMGHVP 125          
BLAST of FC931562 vs. ExPASy Swiss-Prot
Match: FADA_SACD2 (3-ketoacyl-CoA thiolase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=fadA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.177e-13
Identity = 47/126 (37.30%), Postives = 72/126 (57.14%), Query Frame = 1
Query:  130 SIKPRDVCIVGVARTPMGGFL-GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLS-ANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSN 498
            S++PRDV IV  ARTPMG    G   ++ A  L +  I   L R A +DP+ + ++ +G V+     G   AR   L AG+P++V   TVN++C S + A+  A+ +I  G+ DV + GG+E M +
Sbjct:    2 SLQPRDVVIVDYARTPMGRSKNGCYRNVRADDLSADLITGLLARNAALDPAQIDDMIWGCVMQRGEQGFNVARNILLRAGLPHTVPAQTVNRLCGSSMSALHTAAANIMAGLGDVYLVGGVEHMGH 127          
The following BLAST results are available for this feature:
BLAST of FC931562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
PCAF_PSEPU1.781e-1539.39Beta-ketoadipyl-CoA thiolase OS=Pseudomonas putida... [more]
PCAF_ACIAD2.326e-1534.08Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. ... [more]
CATF_ACIAD2.326e-1534.08Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. ... [more]
THIKB_CANTR3.038e-1537.313-ketoacyl-CoA thiolase B, peroxisomal OS=Candida ... [more]
PAAJ_ECOLX3.967e-1537.21Beta-ketoadipyl-CoA thiolase OS=Escherichia coli G... [more]
FADA_MARAV2.571e-1439.063-ketoacyl-CoA thiolase OS=Marinobacter aquaeolei ... [more]
THIK_YARLI4.386e-1436.843-ketoacyl-CoA thiolase, peroxisomal OS=Yarrowia l... [more]
FADA_AERS45.729e-1438.283-ketoacyl-CoA thiolase OS=Aeromonas salmonicida (... [more]
FADA_AERHH7.482e-1437.903-ketoacyl-CoA thiolase OS=Aeromonas hydrophila su... [more]
FADA_SACD22.177e-1337.303-ketoacyl-CoA thiolase OS=Saccharophagus degradan... [more]

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Properties
Property NameValue
Genbank descriptionC34106E05EF PostHarvP1 Citrus clementina cDNA clone C34106E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931562 ID=FC931562; Name=FC931562; organism=Citrus clementina; type=EST; length=669bp
ATTTCCTCAGCACGACATTTCTGCGCTTCCACCCGCAAAAACCATCTCCT
CCTCACGTGATCCACACTCACTCTGAATCTCGCAGATCGTGATTGGCATT
GACAAATGGCTCCAGCGGCAGCATCTGATTCGATAAAGCCTAGAGATGTT
TGTATTGTCGGGGTTGCTCGTACACCAATGGGTGGATTTCTTGGTACTCT
ATCTTCCTTATCTGCTACCAAGCTTGGATCTATCGCTATTGAAGCTGCTC
TTAAGAGAGCAAATGTTGATCCATCACTTGTACAAGAAGTTTTCTTTGGT
AATGTTCTCAGTGCAAATCTAGGACAGGCTCCTGCTAGACAGGCTGCATT
GGGTGCAGGAATTCCGAATTCAGTGGTCTGTACTACTGTTAACAAAGTTT
GTGCATCAGGGCTGAAAGCTATAATGCTTGCATCACAGAGTATCCAGTTG
GGGATCAATGATGTCATTGTGGCTGGAGGAATGGAAAGCATGTCTAACGC
ACCTAAATATTTGGCAGAAGCGAGAAAGGGGTCTCGACTTGGACATGATT
CTCTGGTTGATGGAATGCTTAAAGATGGATTATGGGATGTTTATAATGAT
TGTAGCATGGGAACTTGTGCTGAACTTTGTGCTGAACACATTNCATAACA
GGGAGATCAGGATGACTTT
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