FC931562

Overview
NameFC931562
Unique NameFC931562
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931562 vs. ExPASy Swiss-Prot
Match: FADA_BACSU (3-ketoacyl-CoA thiolase OS=Bacillus subtilis GN=fadA PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.177e-13
Identity = 46/123 (37.40%), Postives = 68/123 (55.28%), Query Frame = 1
Query:  142 RDVCIVGVARTPMG-GFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVL-SANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP 504
            ++  IV  ARTP+G    G+L+++    LG+I ++  LKRA      + ++  G     A  G   AR     AG+P +V   TVN+ C+SGL++I  A++ I LG  D  +AGG ESMS  P
Sbjct:    2 KEAVIVSGARTPVGKAKKGSLATVRPDDLGAICVKETLKRAGGYEGNIDDLIIGCATPEAEQGLNMARNIGALAGLPYTVPAITVNRYCSSGLQSIAYAAEKIMLGAYDTAIAGGAESMSQVP 124          
BLAST of FC931562 vs. ExPASy Swiss-Prot
Match: FADA_ALCBS (3-ketoacyl-CoA thiolase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=fadA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.177e-13
Identity = 49/126 (38.89%), Postives = 70/126 (55.56%), Query Frame = 1
Query:  130 SIKPRDVCIVGVARTPMGGFL-GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSN 498
            S+ P+DV IV   RTPMG    G    + A KL +  I+A + R  N D  L ++V +G V  +   G   AR  ++ AG+P +    TVN++C S ++A+  ASQSI  G  DV V GG+E M +
Sbjct:    2 SLNPKDVVIVDAVRTPMGKSRNGQFRHVRAEKLSAQLIQALMARNPNWDIQLTEDVIWGCVNQTKEQGMNIARNISMLAGLPRTSAAQTVNRLCGSSMQALHSASQSIMTGNGDVFVIGGVEHMGH 127          
BLAST of FC931562 vs. ExPASy Swiss-Prot
Match: FADA_ALISL (3-ketoacyl-CoA thiolase OS=Aliivibrio salmonicida (strain LFI1238) GN=fadA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.843e-13
Identity = 45/124 (36.29%), Postives = 73/124 (58.87%), Query Frame = 1
Query:  142 RDVCIVGVARTPMGGFL-GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP 504
            ++V IV   RTPMG    G      A  L +  ++  L+R  NVDP+ ++++++G V      G   AR A+L AG+P S+  TTVN++C S ++A+  AS++I +G  D+ + GG+E M + P
Sbjct:    2 KNVVIVDCIRTPMGRSKNGVFRHTRAEDLSAHLMKGLLERNPNVDPNQIEDIYWGCVQQTLEQGFNIARNASLLAGLPKSIAATTVNRLCGSSMQALHDASRAIMVGDADICIIGGVEHMGHVP 125          
BLAST of FC931562 vs. ExPASy Swiss-Prot
Match: FADA_HAHCH (3-ketoacyl-CoA thiolase OS=Hahella chejuensis (strain KCTC 2396) GN=fadA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.713e-13
Identity = 47/128 (36.72%), Postives = 72/128 (56.25%), Query Frame = 1
Query:  130 SIKPRDVCIVGVARTPMG-GFLGTLSSLSATKLGSIAIEAALKRAN-VDPSLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP 504
            S+ PRDV ++   R+PMG    G   ++ A  L +  I+A   R + VDP+ V+++ +G V  +   G   ARQ +L   IP++    TVN++C S + AI  A+Q+I  G  DV V GG+E M + P
Sbjct:    2 SLNPRDVVVIDCVRSPMGRAKAGCFRNVRAETLSATLIDALFDRNDKVDPAEVEDLIWGCVNQTLEQGFNVARQISLLTRIPHTSSAQTVNRLCGSAMSAIHTAAQAIMTGNGDVFVVGGVEHMGHVP 129          
BLAST of FC931562 vs. ExPASy Swiss-Prot
Match: FADA_VIBF1 (3-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=fadA PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.843e-12
Identity = 44/124 (35.48%), Postives = 73/124 (58.87%), Query Frame = 1
Query:  142 RDVCIVGVARTPMGGFL-GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP 504
            ++V IV   RTPMG    G      A  L +  ++  LKR  +VDP+ ++++++G V      G   AR +AL AG+P S+  TTVN++C S ++A+  AS++I +G  ++ + GG+E M + P
Sbjct:    2 KNVVIVDCIRTPMGRSKNGVFRHTRAEDLSAHLMKGLLKRNPSVDPNDIEDIYWGCVQQTLEQGFNIARNSALLAGLPQSIAATTVNRLCGSSMQALHDASRAIMVGDAEICIIGGVEHMGHVP 125          
BLAST of FC931562 vs. ExPASy Swiss-Prot
Match: FADA_PSEAE (3-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa GN=fadA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.843e-12
Identity = 47/126 (37.30%), Postives = 70/126 (55.56%), Query Frame = 1
Query:  130 SIKPRDVCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRAN--VDPSLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSN 498
            S+ PRDV IV   RTPMG   G +   +  +  S  + + L   N  VDP+ V++V +G V  +   G   AR A+L   IP++    TV+++C S + A+  A+Q+IQ G  DV V GG+E M +
Sbjct:    2 SLNPRDVVIVDFGRTPMGRSKGGMHRNTRAETMSAHLISKLLERNPKVDPAEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIQTGNGDVFVIGGVEHMGH 127          
BLAST of FC931562 vs. ExPASy Swiss-Prot
Match: FADA_PSEAB (3-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=fadA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.843e-12
Identity = 47/126 (37.30%), Postives = 70/126 (55.56%), Query Frame = 1
Query:  130 SIKPRDVCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRAN--VDPSLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSN 498
            S+ PRDV IV   RTPMG   G +   +  +  S  + + L   N  VDP+ V++V +G V  +   G   AR A+L   IP++    TV+++C S + A+  A+Q+IQ G  DV V GG+E M +
Sbjct:    2 SLNPRDVVIVDFGRTPMGRSKGGMHRNTRAETMSAHLISKLLERNPKVDPAEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIQTGNGDVFVIGGVEHMGH 127          
BLAST of FC931562 vs. ExPASy Swiss-Prot
Match: FADA_PSEA7 (3-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa (strain PA7) GN=fadA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.843e-12
Identity = 47/126 (37.30%), Postives = 70/126 (55.56%), Query Frame = 1
Query:  130 SIKPRDVCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRAN--VDPSLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSN 498
            S+ PRDV IV   RTPMG   G +   +  +  S  + + L   N  VDP+ V++V +G V  +   G   AR A+L   IP++    TV+++C S + A+  A+Q+IQ G  DV V GG+E M +
Sbjct:    2 SLNPRDVVIVDFGRTPMGRSKGGMHRNTRAETMSAHLISKLLERNPKVDPAEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIQTGNGDVFVIGGVEHMGH 127          
BLAST of FC931562 vs. ExPASy Swiss-Prot
Match: FADA_CHRSD (3-ketoacyl-CoA thiolase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=fadA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.843e-12
Identity = 45/129 (34.88%), Postives = 73/129 (56.59%), Query Frame = 1
Query:  130 SIKPRDVCIVGVARTPMGGFL-GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSANLGQAP--ARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP 504
            S+ PRD+ +V   RT M     G   ++ A  L +  ++A   R AN+ P+ V +V +G V +  L Q+   AR AA+  GIP +V   TVN++C S + A+ +A+ +I+ G+ D  + GG+E M + P
Sbjct:    2 SLNPRDIVVVDAVRTAMAKAKHGAFRNVRAENLSAAVMQALFDRNANLVPAEVDDVIWGCV-NQTLEQSMNIARNAAIMTGIPRTVPAQTVNRLCGSSMSALHIATANIKAGMGDFYIIGGVEHMEHVP 129          
BLAST of FC931562 vs. ExPASy Swiss-Prot
Match: FADA_VIBFM (3-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain MJ11) GN=fadA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.407e-12
Identity = 44/124 (35.48%), Postives = 73/124 (58.87%), Query Frame = 1
Query:  142 RDVCIVGVARTPMGGFL-GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP 504
            ++V IV   RTPMG    G      A  L +  ++  LKR  +VDP+ ++++++G V      G   AR +AL AG+P S+  TTVN++C S ++A+  AS++I +G  ++ + GG+E M + P
Sbjct:    2 KNVVIVDCIRTPMGRSKNGVFRYTRAEDLSAHLMKGLLKRNPSVDPNDIEDIYWGCVQQTLEQGFNIARNSALLAGLPQSIAATTVNRLCGSSMQALHDASRAIMVGDAEICIIGGVEHMGHVP 125          
The following BLAST results are available for this feature:
BLAST of FC931562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
FADA_BACSU2.177e-1337.403-ketoacyl-CoA thiolase OS=Bacillus subtilis GN=fa... [more]
FADA_ALCBS2.177e-1338.893-ketoacyl-CoA thiolase OS=Alcanivorax borkumensis... [more]
FADA_ALISL2.843e-1336.293-ketoacyl-CoA thiolase OS=Aliivibrio salmonicida ... [more]
FADA_HAHCH3.713e-1336.723-ketoacyl-CoA thiolase OS=Hahella chejuensis (str... [more]
FADA_VIBF11.843e-1235.483-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain... [more]
FADA_PSEAE1.843e-1237.303-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa ... [more]
FADA_PSEAB1.843e-1237.303-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa ... [more]
FADA_PSEA71.843e-1237.303-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa ... [more]
FADA_CHRSD1.843e-1234.883-ketoacyl-CoA thiolase OS=Chromohalobacter salexi... [more]
FADA_VIBFM2.407e-1235.483-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain... [more]

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Properties
Property NameValue
Genbank descriptionC34106E05EF PostHarvP1 Citrus clementina cDNA clone C34106E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931562 ID=FC931562; Name=FC931562; organism=Citrus clementina; type=EST; length=669bp
ATTTCCTCAGCACGACATTTCTGCGCTTCCACCCGCAAAAACCATCTCCT
CCTCACGTGATCCACACTCACTCTGAATCTCGCAGATCGTGATTGGCATT
GACAAATGGCTCCAGCGGCAGCATCTGATTCGATAAAGCCTAGAGATGTT
TGTATTGTCGGGGTTGCTCGTACACCAATGGGTGGATTTCTTGGTACTCT
ATCTTCCTTATCTGCTACCAAGCTTGGATCTATCGCTATTGAAGCTGCTC
TTAAGAGAGCAAATGTTGATCCATCACTTGTACAAGAAGTTTTCTTTGGT
AATGTTCTCAGTGCAAATCTAGGACAGGCTCCTGCTAGACAGGCTGCATT
GGGTGCAGGAATTCCGAATTCAGTGGTCTGTACTACTGTTAACAAAGTTT
GTGCATCAGGGCTGAAAGCTATAATGCTTGCATCACAGAGTATCCAGTTG
GGGATCAATGATGTCATTGTGGCTGGAGGAATGGAAAGCATGTCTAACGC
ACCTAAATATTTGGCAGAAGCGAGAAAGGGGTCTCGACTTGGACATGATT
CTCTGGTTGATGGAATGCTTAAAGATGGATTATGGGATGTTTATAATGAT
TGTAGCATGGGAACTTGTGCTGAACTTTGTGCTGAACACATTNCATAACA
GGGAGATCAGGATGACTTT
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