FC931562

Overview
NameFC931562
Unique NameFC931562
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931562 vs. ExPASy Swiss-Prot
Match: FADA_IDILO (3-ketoacyl-CoA thiolase OS=Idiomarina loihiensis GN=fadA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.146e-12
Identity = 44/124 (35.48%), Postives = 70/124 (56.45%), Query Frame = 1
Query:  142 RDVCIVGVARTPMGGFL-GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP 504
            +D+ IV   RTPMG    G      A  L +  ++  L+R   VDP  ++++++G V      G   AR +AL AGIP+ V   TVN++C S ++A+  A+++I  G  D+ +AGG+E M + P
Sbjct:    2 KDIVIVDCIRTPMGRSKNGVFRHTRAEDLSAALMKGLLERNPEVDPEELEDIYWGCVQQTLEQGFNIARNSALIAGIPHKVAGVTVNRLCGSSMQALHDATRAIMNGDGDIFMAGGVEHMGHVP 125          
BLAST of FC931562 vs. ExPASy Swiss-Prot
Match: FADA_PSESM (3-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv. tomato GN=fadA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.195e-11
Identity = 47/126 (37.30%), Postives = 70/126 (55.56%), Query Frame = 1
Query:  130 SIKPRDVCIVGVARTPMGGFLGTLS-SLSATKLGSIAIEAALKRAN-VDPSLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSN 498
            S+ PRDV IV   RTPMG   G +  +  A  + +  I   L+R N VDP+ V++V +G V  +   G   AR A+L   IP++    TV+++C S + A+  A+Q+I     DV V GG+E M +
Sbjct:    2 SLNPRDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNNKVDPAEVEDVIWGCVNQTLEQGWNIARMASLLTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTNNGDVFVIGGVEHMGH 127          
BLAST of FC931562 vs. ExPASy Swiss-Prot
Match: FADA_PSEE4 (3-ketoacyl-CoA thiolase OS=Pseudomonas entomophila (strain L48) GN=fadA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.195e-11
Identity = 46/126 (36.51%), Postives = 70/126 (55.56%), Query Frame = 1
Query:  130 SIKPRDVCIVGVARTPMGGFLGTLS-SLSATKLGSIAIEAALKRAN-VDPSLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSN 498
            S+ PRDV IV   RTPMG   G +  +  A  + +  I   L+R + +DP  V++V +G V  +   G   AR A+L   IP++    TV+++C S + A+  A+Q+I  G  DV V GG+E M +
Sbjct:    2 SLNPRDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNDKIDPKEVEDVIWGCVNQTMEQGWNIARMASLMTPIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVIGGVEHMGH 127          
BLAST of FC931562 vs. ExPASy Swiss-Prot
Match: FADA_PSE14 (3-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=fadA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.195e-11
Identity = 47/126 (37.30%), Postives = 70/126 (55.56%), Query Frame = 1
Query:  130 SIKPRDVCIVGVARTPMGGFLGTLS-SLSATKLGSIAIEAALKRAN-VDPSLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSN 498
            S+ PRDV IV   RTPMG   G +  +  A  + +  I   L+R N VDP+ V++V +G V  +   G   AR A+L   IP++    TV+++C S + A+  A+Q+I     DV V GG+E M +
Sbjct:    2 SLNPRDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNNKVDPAEVEDVIWGCVNQTLEQGWNIARMASLLTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTNNGDVFVIGGVEHMGH 127          
BLAST of FC931562 vs. ExPASy Swiss-Prot
Match: FADA_PSEU2 (3-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=fadA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.560e-11
Identity = 46/126 (36.51%), Postives = 70/126 (55.56%), Query Frame = 1
Query:  130 SIKPRDVCIVGVARTPMGGFLGTLS-SLSATKLGSIAIEAALKRAN-VDPSLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSN 498
            S+ PRDV IV   RTPMG   G +  +  A  + +  I   L+R N VDP+ V++V +G V  +   G   AR A+L   IP++    TV+++C S + A+  A+Q+I     DV + GG+E M +
Sbjct:    2 SLNPRDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNNKVDPAEVEDVIWGCVNQTLEQGWNIARMASLLTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTNNGDVFIIGGVEHMGH 127          
BLAST of FC931562 vs. ExPASy Swiss-Prot
Match: THIK_HUMAN (3-ketoacyl-CoA thiolase, peroxisomal OS=Homo sapiens GN=ACAA1 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.038e-11
Identity = 50/148 (33.78%), Postives = 74/148 (50.00%), Query Frame = 1
Query:   82 ADRDWH*QMAPA-AASDSIKPRDVCIV-----GVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPK 507
            AD  W  Q AP  + +      DV +V      + R   GGF  T    +  +L S  + A LK  N+ P  + ++  GNVL    G   AR A   + IP +V  +TVN+ C+SGL+A+   +  I+ G  D+ +A G+ESMS A +
Sbjct:   15 ADSGWMPQAAPCLSGAPQASAADVVVVHGRRTAICRAGRGGFKDT----TPDELLSAVMTAVLKDVNLRPEQLGDICVGNVLQPGAGAIMARIAQFLSDIPETVPLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVESMSLADR 158          
BLAST of FC931562 vs. ExPASy Swiss-Prot
Match: FADA_SHEAM (3-ketoacyl-CoA thiolase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=fadA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.038e-11
Identity = 43/124 (34.68%), Postives = 68/124 (54.84%), Query Frame = 1
Query:  142 RDVCIVGVARTPMGGFLG-TLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP 504
            +   IV   RTPMG   G    ++ A  L +  ++A L R   VDP+ +++V +G V      G   AR A+L AG+P +    TVN++C S ++A+  AS++I  G+ D  + GG+E M + P
Sbjct:    2 KQAVIVDCIRTPMGRSKGGVFRNVRAETLSAELMKALLLRNPGVDPNTIEDVIWGCVQQTLEQGFNIARNASLLAGVPKTAGAVTVNRLCGSSMEALHQASRAIMTGMGDTFIIGGVEHMGHVP 125          
BLAST of FC931562 vs. ExPASy Swiss-Prot
Match: FADA_PHOPR (3-ketoacyl-CoA thiolase OS=Photobacterium profundum GN=fadA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.038e-11
Identity = 41/123 (33.33%), Postives = 72/123 (58.54%), Query Frame = 1
Query:  145 DVCIVGVARTPMG-GFLGTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP 504
            +V IV   RTPMG    G   ++ A  L +  ++  + R   +DP+ ++++++G V      G   AR A+L AGIP++V  TTVN++C S ++A+  A+++I +G  +  + GG+E M + P
Sbjct:    3 NVVIVDCIRTPMGRSKAGAFRNVRAEDLSAHLMKGLISRNPQLDPNSIEDIYWGCVQQTLEQGFNVARNASLLAGIPHTVAATTVNRLCGSSMQALHDATRAIMVGDAETCIIGGVEHMGHVP 125          
BLAST of FC931562 vs. ExPASy Swiss-Prot
Match: FADA_MARMS (3-ketoacyl-CoA thiolase OS=Marinomonas sp. (strain MWYL1) GN=fadA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.038e-11
Identity = 44/125 (35.20%), Postives = 67/125 (53.60%), Query Frame = 1
Query:  133 IKPRDVCIVGVARTPMGGFL-GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSN 498
            + P DV I+   R+PMG    G   ++ A  L +  ++   KR  NVD   V+++ +G V  +   G   AR  +L AG+P +    TVN++C S + AI  A+Q+I  G  DV V GG+E M +
Sbjct:    3 LNPNDVVIIDAVRSPMGKTKNGVFRNVRAENLSAALVKELFKRNPNVDQKDVEDLIWGCVNQTLEQGFNMARAVSLLAGLPITCAAQTVNRLCGSSMSAIHTAAQAIMTGQGDVFVVGGVEHMGH 127          
BLAST of FC931562 vs. ExPASy Swiss-Prot
Match: THIKA_MOUSE (3-ketoacyl-CoA thiolase A, peroxisomal OS=Mus musculus GN=Acaa1a PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.475e-11
Identity = 46/133 (34.59%), Postives = 70/133 (52.63%), Query Frame = 1
Query:  103 QMAPAAAS-DSIKPRDVCIVGVARTPMG-GFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMS 495
            Q AP +A        DV +V   RTP+G    G   + +  +L S  + A L+   + P  + ++  GNVL    G   AR A   +GIP +V  +TVN+ C+SGL+A+   +  I+ G  D+ +A G+ESMS
Sbjct:   22 QAAPCSARFPQASASDVVVVHGRRTPIGRASRGGFKNTTPDELLSAVLTAVLQDVRLKPEQLGDISVGNVLEPGAGAVMARIAQFLSGIPETVPLSTVNRQCSSGLQAVANIAGGIRNGSYDIGMACGVESMS 154          
The following BLAST results are available for this feature:
BLAST of FC931562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
FADA_IDILO9.146e-1235.483-ketoacyl-CoA thiolase OS=Idiomarina loihiensis G... [more]
FADA_PSESM1.195e-1137.303-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv... [more]
FADA_PSEE41.195e-1136.513-ketoacyl-CoA thiolase OS=Pseudomonas entomophila... [more]
FADA_PSE141.195e-1137.303-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv... [more]
FADA_PSEU21.560e-1136.513-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv... [more]
THIK_HUMAN2.038e-1133.783-ketoacyl-CoA thiolase, peroxisomal OS=Homo sapie... [more]
FADA_SHEAM2.038e-1134.683-ketoacyl-CoA thiolase OS=Shewanella amazonensis ... [more]
FADA_PHOPR2.038e-1133.333-ketoacyl-CoA thiolase OS=Photobacterium profundu... [more]
FADA_MARMS2.038e-1135.203-ketoacyl-CoA thiolase OS=Marinomonas sp. (strain... [more]
THIKA_MOUSE3.475e-1134.593-ketoacyl-CoA thiolase A, peroxisomal OS=Mus musc... [more]

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Properties
Property NameValue
Genbank descriptionC34106E05EF PostHarvP1 Citrus clementina cDNA clone C34106E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931562 ID=FC931562; Name=FC931562; organism=Citrus clementina; type=EST; length=669bp
ATTTCCTCAGCACGACATTTCTGCGCTTCCACCCGCAAAAACCATCTCCT
CCTCACGTGATCCACACTCACTCTGAATCTCGCAGATCGTGATTGGCATT
GACAAATGGCTCCAGCGGCAGCATCTGATTCGATAAAGCCTAGAGATGTT
TGTATTGTCGGGGTTGCTCGTACACCAATGGGTGGATTTCTTGGTACTCT
ATCTTCCTTATCTGCTACCAAGCTTGGATCTATCGCTATTGAAGCTGCTC
TTAAGAGAGCAAATGTTGATCCATCACTTGTACAAGAAGTTTTCTTTGGT
AATGTTCTCAGTGCAAATCTAGGACAGGCTCCTGCTAGACAGGCTGCATT
GGGTGCAGGAATTCCGAATTCAGTGGTCTGTACTACTGTTAACAAAGTTT
GTGCATCAGGGCTGAAAGCTATAATGCTTGCATCACAGAGTATCCAGTTG
GGGATCAATGATGTCATTGTGGCTGGAGGAATGGAAAGCATGTCTAACGC
ACCTAAATATTTGGCAGAAGCGAGAAAGGGGTCTCGACTTGGACATGATT
CTCTGGTTGATGGAATGCTTAAAGATGGATTATGGGATGTTTATAATGAT
TGTAGCATGGGAACTTGTGCTGAACTTTGTGCTGAACACATTNCATAACA
GGGAGATCAGGATGACTTT
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