FC931571

Overview
NameFC931571
Unique NameFC931571
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length511
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931571 vs. ExPASy Swiss-Prot
Match: RL36A_HUMAN (60S ribosomal protein L36a OS=Homo sapiens GN=RPL36A PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 3.155e-38
Identity = 77/103 (74.76%), Postives = 85/103 (82.52%), Query Frame = 3
Query:   63 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQC--QGCKHVSQHPIKRCKHFEIGGDKKGKG 365
            MVNVPKT++T+CK  +C KH  HKVTQYKKGKDSL AQGKRRYDRKQSGYGGQTKP+F KKAKTTKKIVLRL+C    C+      IKRCKHFE+GGDKK KG
Sbjct:    1 MVNVPKTRRTFCK--KCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101          
BLAST of FC931571 vs. ExPASy Swiss-Prot
Match: RL36A_BOVIN (60S ribosomal protein L36a OS=Bos taurus GN=RPL36A PE=3 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 3.155e-38
Identity = 77/103 (74.76%), Postives = 85/103 (82.52%), Query Frame = 3
Query:   63 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQC--QGCKHVSQHPIKRCKHFEIGGDKKGKG 365
            MVNVPKT++T+CK  +C KH  HKVTQYKKGKDSL AQGKRRYDRKQSGYGGQTKP+F KKAKTTKKIVLRL+C    C+      IKRCKHFE+GGDKK KG
Sbjct:    1 MVNVPKTRRTFCK--KCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101          
BLAST of FC931571 vs. ExPASy Swiss-Prot
Match: RL44_AEDTR (60S ribosomal protein L44 OS=Aedes triseriatus GN=RpL44 PE=3 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 7.029e-38
Identity = 70/101 (69.31%), Postives = 85/101 (84.16%), Query Frame = 3
Query:   63 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 365
            MVNVPK ++TYCK  +C+ H +HKVTQYKK K+  A+QG+RRYDRKQ G+GGQTKP+F KKAKTTKKIVLR++C  CK+  Q P+KRCKHFE+GGDKK KG
Sbjct:    1 MVNVPKQRRTYCK--KCKVHRVHKVTQYKKSKERKASQGRRRYDRKQKGFGGQTKPIFRKKAKTTKKIVLRMECVDCKYRKQTPLKRCKHFELGGDKKRKG 99          
BLAST of FC931571 vs. ExPASy Swiss-Prot
Match: RL36L_HUMAN (60S ribosomal protein L36a-like OS=Homo sapiens GN=RPL36AL PE=1 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 7.029e-38
Identity = 76/103 (73.79%), Postives = 85/103 (82.52%), Query Frame = 3
Query:   63 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQC--QGCKHVSQHPIKRCKHFEIGGDKKGKG 365
            MVNVPKT++T+CK  +C KH  HKVTQYKKGKDSL AQG+RRYDRKQSGYGGQTKP+F KKAKTTKKIVLRL+C    C+      IKRCKHFE+GGDKK KG
Sbjct:    1 MVNVPKTRRTFCK--KCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101          
BLAST of FC931571 vs. ExPASy Swiss-Prot
Match: RL36L_PONAB (60S ribosomal protein L36a-like OS=Pongo abelii GN=RPL36AL PE=3 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 2.045e-37
Identity = 75/103 (72.82%), Postives = 85/103 (82.52%), Query Frame = 3
Query:   63 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQC--QGCKHVSQHPIKRCKHFEIGGDKKGKG 365
            MVNVPKT++T+CK  +C KH  HKVTQYKKGKDSL AQG+RRYDRK+SGYGGQTKP+F KKAKTTKKIVLRL+C    C+      IKRCKHFE+GGDKK KG
Sbjct:    1 MVNVPKTRRTFCK--KCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKRSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101          
BLAST of FC931571 vs. ExPASy Swiss-Prot
Match: RL44_PLAF7 (60S ribosomal protein L44 OS=Plasmodium falciparum (isolate 3D7) GN=RPL44 PE=3 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 6.579e-36
Identity = 69/105 (65.71%), Postives = 86/105 (81.90%), Query Frame = 3
Query:   63 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 377
            MVNVPKT+KTYC +K C+KHT+HKV+QYKKGK+ L++ G+RRYD KQ G+GGQTKPVF KKAKTTKKIVL+L+C  CK      +KRCK FE+G DKK KG +++
Sbjct:    1 MVNVPKTRKTYCSNK-CKKHTMHKVSQYKKGKERLSSLGRRRYDMKQKGFGGQTKPVFKKKAKTTKKIVLKLECTKCKKKRFQTMKRCKTFEMGADKKKKGGAVY 104          
BLAST of FC931571 vs. ExPASy Swiss-Prot
Match: RL36A_DICDI (60S ribosomal protein L36a OS=Dictyostelium discoideum GN=rpl36a PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 6.579e-36
Identity = 71/104 (68.27%), Postives = 84/104 (80.77%), Query Frame = 3
Query:   63 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 374
            MVN+PK +KT+C   +C KHT HKVTQYK GK SL AQGKRRYDRKQSG+GGQTKPVFHKKAKTTKKIVLR++C  C +  Q  +KRCK FE+GG+KK K  ++
Sbjct:    1 MVNIPKARKTHCV--KCNKHTPHKVTQYKAGKPSLFAQGKRRYDRKQSGFGGQTKPVFHKKAKTTKKIVLRMEC-SCGYKKQQVLKRCKRFELGGEKKSKNEAI 101          
BLAST of FC931571 vs. ExPASy Swiss-Prot
Match: RL36A_PAPAN (60S ribosomal protein L36a OS=Papio anubis GN=RPL36A PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.764e-34
Identity = 72/103 (69.90%), Postives = 80/103 (77.67%), Query Frame = 3
Query:   63 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQC--QGCKHVSQHPIKRCKHFEIGGDKKGKG 365
            MVNVPKT++T+CK  +  KH  HKVTQYKKGKDSL A GKRRYDRKQSGYGG TKP+F KKAKTTKKIVLRL+C    C+       KRCKHFE+GGDK  KG
Sbjct:    1 MVNVPKTRQTFCKKYD--KHQPHKVTQYKKGKDSLYALGKRRYDRKQSGYGGHTKPIFWKKAKTTKKIVLRLECVEPNCRSERMLATKRCKHFELGGDKTRKG 101          
BLAST of FC931571 vs. ExPASy Swiss-Prot
Match: RL44_TRYBB (60S ribosomal protein L44 OS=Trypanosoma brucei brucei GN=RPL44 PE=3 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 1.517e-32
Identity = 64/98 (65.31%), Postives = 73/98 (74.49%), Query Frame = 3
Query:   63 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKK 356
            MVN PK KK +C  + C  H   KV QYK GK  L A+GKRRYDRKQSGYGGQTKP+FHKKAKTTKKIVL+LQC  CK + Q+ +KR KHFE+   KK
Sbjct:    1 MVNYPKKKKMHCPDERCNAHKSFKVVQYKAGKARLYARGKRRYDRKQSGYGGQTKPIFHKKAKTTKKIVLKLQCSNCKSIIQNVLKRTKHFELNDKKK 98          
BLAST of FC931571 vs. ExPASy Swiss-Prot
Match: RL44_ENCCU (60S ribosomal protein L44 OS=Encephalitozoon cuniculi GN=RPL44 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.677e-29
Identity = 59/104 (56.73%), Postives = 76/104 (73.08%), Query Frame = 3
Query:   63 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 374
            MVN+PKT+ T+CK  +C+ ++ HKV+Q KK KD+  AQG RRY RKQ GYGGQTKP+  +KAK TKK+VL L+C  CK   Q P+KR KH   GG++K KG +L
Sbjct:    1 MVNIPKTRNTFCK--KCKGYSAHKVSQAKKSKDNPRAQGNRRYARKQRGYGGQTKPILRRKAKVTKKLVLNLECTKCKFSHQKPLKRAKHVIFGGERKRKGEAL 102          
The following BLAST results are available for this feature:
BLAST of FC931571 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
RL36A_HUMAN3.155e-3874.7660S ribosomal protein L36a OS=Homo sapiens GN=RPL3... [more]
RL36A_BOVIN3.155e-3874.7660S ribosomal protein L36a OS=Bos taurus GN=RPL36A... [more]
RL44_AEDTR7.029e-3869.3160S ribosomal protein L44 OS=Aedes triseriatus GN=... [more]
RL36L_HUMAN7.029e-3873.7960S ribosomal protein L36a-like OS=Homo sapiens GN... [more]
RL36L_PONAB2.045e-3772.8260S ribosomal protein L36a-like OS=Pongo abelii GN... [more]
RL44_PLAF76.579e-3665.7160S ribosomal protein L44 OS=Plasmodium falciparum... [more]
RL36A_DICDI6.579e-3668.2760S ribosomal protein L36a OS=Dictyostelium discoi... [more]
RL36A_PAPAN2.764e-3469.9060S ribosomal protein L36a OS=Papio anubis GN=RPL3... [more]
RL44_TRYBB1.517e-3265.3160S ribosomal protein L44 OS=Trypanosoma brucei br... [more]
RL44_ENCCU2.677e-2956.7360S ribosomal protein L44 OS=Encephalitozoon cunic... [more]

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Properties
Property NameValue
Genbank descriptionC34106F03EF PostHarvP1 Citrus clementina cDNA clone C34106F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931571 ID=FC931571; Name=FC931571; organism=Citrus clementina; type=EST; length=511bp
GACCCTTCGGCAGCAGTTGGAAGTTACGAAGAGCTCTCTCGTCGTCGCCG
CAGCCGGCCATCATGGTGAATGTTCCCAAGACTAAGAAGACTTACTGCAA
GAGCAAGGAGTGCAGAAAGCACACCTTGCACAAGGTGACACAGTACAAGA
AGGGCAAGGACAGTCTTGCTGCTCAAGGGAAGAGACGGTATGATCGCAAG
CAGTCTGGCTATGGCGGTCAGACCAAGCCTGTCTTCCACAAGAAGGCTAA
GACCACCAAGAAGATTGTGCTGAGGCTCCAATGCCAGGGTTGCAAGCATG
TGTCTCAACATCCCATCAAGAGGTGCAAGCACTTTGAAATTGGTGGAGAC
AAGAAGGGAAAGGGAACATCTCTTTTCTAAATGCCTTTATTTTTGTTTTT
ATGCTTTTTACTTTGCTGCACTTGATGGAACATTACCCAGTATGAGAATA
TTTGTTTTAGTTTTGTTGGGTTAGTTTGATGCTGTTAATTTAAAACTTGA
AGCGGTTGTTT
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