FC931571

Overview
NameFC931571
Unique NameFC931571
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length511
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC931571 vs. ExPASy Swiss-Prot
Match: RL44_THEAC (50S ribosomal protein L44E OS=Thermoplasma acidophilum GN=rpl44e PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.992e-13
Identity = 40/92 (43.48%), Postives = 50/92 (54.35%), Query Frame = 3 
Query:   66 VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEI 341
            + +PK   TYC    C+KHT H V + +K K S    G+RR+ R  SGYGG  +P F  + K TK+I LRL C  C      P  R K FEI
Sbjct:    1 MKMPKKIMTYCPY--CKKHTSHSVERVRKRKASELKAGQRRFRRVTSGYGGFPRPKFEGREKPTKRIALRLVCDECHKAITPPGIRAKKFEI 90
[Close]
BLAST of FC931571 vs. ExPASy Swiss-Prot
Match: RL44_AERPE (50S ribosomal protein L44E OS=Aeropyrum pernix GN=rpl44e PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 2.974e-12
Identity = 36/73 (49.32%), Postives = 43/73 (58.90%), Query Frame = 3 
Query:   75 PKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGC 293
            PK  +TYC    C  HT H+V QY+ GK    A G+RRY RKQ GYG Q +P   + AK TKK VL + C  C
Sbjct:    4 PKRIRTYCP--RCNTHTEHRVAQYRAGKRRAMALGERRYRRKQEGYGSQRRPEQKRFAKVTKKQVLVITCTVC 74
The following BLAST results are available for this feature:
BLAST of FC931571 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
RL44_THEAC5.992e-1343.4850S ribosomal protein L44E OS=Thermoplasma acidoph... [more]
RL44_AERPE2.974e-1249.3250S ribosomal protein L44E OS=Aeropyrum pernix GN=... [more]

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Properties
Property NameValue
Genbank descriptionC34106F03EF PostHarvP1 Citrus clementina cDNA clone C34106F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931571 ID=FC931571; Name=FC931571; organism=Citrus clementina; type=EST; length=511bp
GACCCTTCGGCAGCAGTTGGAAGTTACGAAGAGCTCTCTCGTCGTCGCCG
CAGCCGGCCATCATGGTGAATGTTCCCAAGACTAAGAAGACTTACTGCAA
GAGCAAGGAGTGCAGAAAGCACACCTTGCACAAGGTGACACAGTACAAGA
AGGGCAAGGACAGTCTTGCTGCTCAAGGGAAGAGACGGTATGATCGCAAG
CAGTCTGGCTATGGCGGTCAGACCAAGCCTGTCTTCCACAAGAAGGCTAA
GACCACCAAGAAGATTGTGCTGAGGCTCCAATGCCAGGGTTGCAAGCATG
TGTCTCAACATCCCATCAAGAGGTGCAAGCACTTTGAAATTGGTGGAGAC
AAGAAGGGAAAGGGAACATCTCTTTTCTAAATGCCTTTATTTTTGTTTTT
ATGCTTTTTACTTTGCTGCACTTGATGGAACATTACCCAGTATGAGAATA
TTTGTTTTAGTTTTGTTGGGTTAGTTTGATGCTGTTAATTTAAAACTTGA
AGCGGTTGTTT
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