FC931572

Overview
NameFC931572
Unique NameFC931572
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Libraries
Library NameType
PostHarvP1cdna_library
Homology
BLAST of FC931572 vs. ExPASy Swiss-Prot
Match: YFHE_SCHPO (Uncharacterized trans-sulfuration enzyme C23A1.14c OS=Schizosaccharomyces pombe GN=SPAC23A1.14c PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.286e-19
Identity = 52/148 (35.14%), Postives = 86/148 (58.11%), Query Frame = 3
Query:   75 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGCISGSEK-LVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKIL 515
            T ++ + ++G   A+   +V   + E+P NP     D+    +L  KKGAI+ +D TFA P  Q AL LGAD V+HSATK++ GH+DVLAG  +  ++  +  ++     LG  L+P  A+L++R ++T  LR+ + +     +A+ L
Sbjct:  135 TGLETSFIDGKCDAIGEGDV--IWLETPLNPLGIAFDIPFYKELAKKKGAILVVDSTFAPPPIQDALVLGADYVVHSATKYLAGHSDVLAGVTASKDRSKILDLKADRAYLGTILHPQQAFLLLRSLRTFPLRIAKHSENGFLVAQHL 280          
BLAST of FC931572 vs. ExPASy Swiss-Prot
Match: STR3_YEAST (Cystathionine beta-lyase OS=Saccharomyces cerevisiae GN=STR3 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.413e-18
Identity = 63/219 (28.77%), Postives = 108/219 (49.32%), Query Frame = 3
Query:   12 DCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNN-NNVSLFFTESPTNPFLRCVDVKLVSDL--CHKKGAIVCIDGTFATPLNQKALSL--GADLVLHSATKFIGGHNDVLAGCI-SGSEKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILE--------AHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFE 626
            D Y  T+  +     +    +  +D +D E  +    + + V     ESPTNP  + VD+  +     C      V +D T  + LN   L L  G D+V  SATK++ GH+D++ G I S + ++ +++  + +  G  L+P  ++L++RG+KTL +R+ QQ   A+ +A  LE           K  +  + GL+S+P+  +      G G V+SFE
Sbjct:  108 DLYGGTQRLLNFFKQQSHAVSVHVDTSDFEKFKTVFQSLDKVDCVLLESPTNPLCKVVDIPRILRFVKCISPDTTVVVDNTMMSGLNCNPLQLNPGCDVVYESATKYLNGHHDLMGGVIISKTPEIASKLYFVINSTGAGLSPMDSWLLVRGLKTLGVRLYQQQRNAMILAHWLENSCGFKPTRTNKATKTRFVGLRSNPDFKLHKSFNNGPGAVLSFE 326          
BLAST of FC931572 vs. ExPASy Swiss-Prot
Match: MET7_NEUCR (Cystathionine gamma-synthase OS=Neurospora crassa GN=met-7 PE=3 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 9.811e-12
Identity = 53/200 (26.50%), Postives = 92/200 (46.00%), Query Frame = 3
Query:   90 ADMEGLEAALNNNNVSL-FFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAG--CISGSEKLVTQIRN-LHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLK-SHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALK 674
            +D++ LE  L +    L  F E P NP L C D+  + +L  K    V +D T  T  N   L   AD+V+ S TK   G  +V+ G    + + +  + +++ +   L     P     + R  +    R+ + N+ A  + ++L+ HP VK ++YP    S   +        G+GG++S  + G   A + F DA++
Sbjct:  355 SDLDDLETRLESGERYLALFCEFPGNPLLTCPDLVRIRELADKYEFAVVVDETIGTFANVNVLQF-ADIVVSSLTKIFSGDCNVMGGGAIFNPNSRYYSALKSFVQQQLEDTYWPEDVIFMERNSRDFVARIDRVNANAEAICRVLQDHPLVKTLYYPKYNDSRANYEAVKLPQGGYGGLISVVLKGKKQA-VAFYDAIE 552          
The following BLAST results are available for this feature:
BLAST of FC931572 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
YFHE_SCHPO8.286e-1935.14Uncharacterized trans-sulfuration enzyme C23A1.14c... [more]
STR3_YEAST1.413e-1828.77Cystathionine beta-lyase OS=Saccharomyces cerevisi... [more]
MET7_NEUCR9.811e-1226.50Cystathionine gamma-synthase OS=Neurospora crassa ... [more]

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Properties
Property NameValue
Genbank descriptionC34106F04EF PostHarvP1 Citrus clementina cDNA clone C34106F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931572 ID=FC931572; Name=FC931572; organism=Citrus clementina; type=EST; length=696bp
GTGACACCACTGATTGCTACAGGAAGACTAGGATTTTCATTGAGACTGTT
CTGCCCAAAATGGGAATCACGGCTACGGTGATTGACCCAGCTGATATGGA
AGGTTTGGAGGCAGCACTCAACAATAACAATGTCTCACTATTCTTCACCG
AGTCTCCAACCAATCCATTCCTGAGATGTGTGGATGTCAAACTGGTTTCA
GATCTTTGCCATAAGAAAGGAGCAATAGTTTGCATAGATGGAACCTTTGC
CACACCTCTCAATCAGAAGGCCCTCAGCCTTGGTGCTGATCTTGTACTGC
ACTCTGCAACAAAATTCATTGGTGGCCACAATGATGTCCTTGCTGGGTGC
ATTAGTGGTTCAGAGAAGTTAGTTACACAAATTCGTAATTTGCATCATGT
TTTGGGTGGTGCTCTCAACCCGAATGCCGCGTATTTGATCATTCGAGGCA
TGAAGACATTGCATCTTCGTGTACAGCAACAAAATTCAACTGCGTTGAGG
ATGGCCAAGATTTTAGAGGCACATCCAAAGGTGAAGCGCGTTCACTATCC
AGGCTTGAAGAGTCATCCTGAGCATCACATTGCCACACAGCAAATGACTG
GTTTTGGTGGGGTAGTTAGTTTTGAGGTTGATGGAGACCTAACGGCCACC
ATAAAATTTATTGATGCCTTGAAAATCCCATATATTGCTCCATCCT
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