FC931575

Overview
NameFC931575
Unique NameFC931575
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931575_ssr35 microsatellite FC931575_ssr35:35..52. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15355 contig Ccv1_Contig15355:1..692. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y1894_XANCB (UPF0061 protein xcc-b100_1894 OS=Xanthomonas campestris pv. campestris (strain B100) GN=xcc-b100_1894 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.146e-20
Identity = 58/125 (46.40%), Postives = 73/125 (58.40%), Query Frame = 2
Query:  293 LNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            L +D+    +LPGDP      REVL A ++ V P+  V  P L+A+S  VA  L L  ++   P F   F G     G  P+A  YGGHQFG WAGQLGDGRAI+LGE + +   R+ELQLK  G
Sbjct:    4 LQFDNRLRAQLPGDPEQGPRRREVL-AAWSAVRPTP-VAAPTLLAYSADVAQRLGLRAEDLASPQFAEVFGGNALYPGMQPWAVNYGGHQFGHWAGQLGDGRAISLGEAIGVDGGRYELQLKGAG 126          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: SELO_HUMAN (Selenoprotein O OS=Homo sapiens GN=SELO PE=2 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 1.497e-20
Identity = 62/136 (45.59%), Postives = 74/136 (54.41%), Query Frame = 2
Query:  284 LEDLNWDHSFVRELP------GDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELD--PKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            L  L +D+  +R LP      G     S PR V  AC+T+V P+  +  P+LVA SE     L L   P      +  LFFSG   L GA P A CY GHQFG +AGQLGDG A+ LGE+     ERWELQLK  G
Sbjct:   45 LAGLRFDNRALRALPVEAPPPGPEGAPSAPRPVPGACFTRVQPTP-LRQPRLVALSEPALALLGLGAPPAREAEAEAALFFSGNALLPGAEPAAHCYCGHQFGQFAGQLGDGAAMYLGEVCTATGERWELQLKGAG 179          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y2619_XYLFA (UPF0061 protein XF_2619 OS=Xylella fastidiosa GN=XF_2619 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.554e-20
Identity = 58/125 (46.40%), Postives = 72/125 (57.60%), Query Frame = 2
Query:  293 LNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            L +++ F+  LP DP      R+VL A ++ V+P+  V  P L+A+S  VA  L  D +E   P F   FSG     G  PYA  YGGHQFG W GQLGDGR ITLGE+L      +ELQLK  G
Sbjct:    4 LRFNNRFIAVLPCDPEVSLRSRQVLEA-WSGVAPTP-VPVPCLLAYSSEVAAILNFDAEELVTPRFVEVFSGNALYPGMQPYAVNYGGHQFGQWVGQLGDGRVITLGELLGADGVYYELQLKGAG 126          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y2392_XANAC (UPF0061 protein XAC2392 OS=Xanthomonas axonopodis pv. citri GN=XAC2392 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.705e-20
Identity = 58/125 (46.40%), Postives = 71/125 (56.80%), Query Frame = 2
Query:  293 LNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            L +D+   ++LPGDP   S  REV  A ++ V P+  V  P L+A S  +A  L LD  E     F   F G     G  P+A  YGGHQFG WAGQLGDGRAI+LGE +     R+ELQLK  G
Sbjct:    4 LRFDNRLRQQLPGDPEEGSRRREVSVA-WSAVLPTP-VAAPSLIAHSAEMAQVLGLDAAEIASAQFAQVFGGNALYPGMQPWAVNYGGHQFGHWAGQLGDGRAISLGEAIGTDGGRYELQLKGAG 126          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: SELO_MOUSE (Selenoprotein O OS=Mus musculus GN=Selo PE=1 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 1.268e-19
Identity = 60/136 (44.12%), Postives = 75/136 (55.15%), Query Frame = 2
Query:  284 LEDLNWDHSFVRELP------GDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFER--PDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            L  L +D+  +RELP      G   + + PR V  AC+++  P A +  P+LVA SE     L L+  E      +  LFFSG   L G  P A CY GHQFG +AGQLGDG A+ LGE+     ERWELQLK  G
Sbjct:   46 LAGLRFDNRALRELPVETPPPGPEDSLATPRPVPGACFSRARP-APLRRPRLVALSEPALALLGLEASEEAEVEAEAALFFSGNALLPGTEPAAHCYCGHQFGQFAGQLGDGAAMYLGEVCTAAGERWELQLKGAG 180          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y2589_XANC5 (UPF0061 protein XCV2589 OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=XCV2589 PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.162e-19
Identity = 56/125 (44.80%), Postives = 72/125 (57.60%), Query Frame = 2
Query:  293 LNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            L++D+   ++LPGDP   +  REV  A ++ V P+  V  P L+A S  +A  L L+  E     F   F G     G  P+A  YGGHQFG WAGQLGDGRAI+LGE +     R+ELQLK  G
Sbjct:    4 LHFDNRLRQQLPGDPEEGARRREV-GAAWSSVLPTP-VAAPYLIAHSAEMAQVLGLEAAEIASAQFAQVFGGNALYPGMQPWAVNYGGHQFGHWAGQLGDGRAISLGEAIGTDGGRYELQLKGAG 126          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y2793_FLAJ1 (UPF0061 protein Fjoh_2793 OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=Fjoh_2793 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.073e-18
Identity = 52/129 (40.31%), Postives = 75/129 (58.14%), Query Frame = 2
Query:  284 LEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            +++L  ++ F  ELP DP   +  R+V +  ++ V+P+ +  NP+L+  SE  A  + +  +E    +F   FSG   L    PYA CY GHQFG WAGQLGDGRAI L E+ N  +  + LQLK  G+
Sbjct:    1 MKNLKINNRFTAELPADPDLTNETRQVKNTAFSYVNPT-KPSNPKLIHASEETAALVGISKEEIHSEEFLNVFSGKEILPETQPYAMCYAGHQFGNWAGQLGDGRAINLTEVEN-NNTFYTLQLKGAGK 127          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: SELO_DANRE (Selenoprotein O OS=Danio rerio GN=selo PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.830e-18
Identity = 56/153 (36.60%), Postives = 86/153 (56.21%), Query Frame = 2
Query:  245 GGDESKMTKKLKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKE-FERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSE-----------RWELQLKELG 667
            G D+  ++    +LE L +D+  +++LP DP T+   R+V  +C+++V P+  ++NP+ VA S      L LD +E  + P  P + SG+  + G+ P A CY GHQFG +AGQLGDG A  LGE+     +           RWE+Q+K  G
Sbjct:   28 GMDDMGVSLSRSSLERLEFDNVALKKLPLDPSTEPGVRQVRGSCFSRVQPTP-LKNPEFVAVSAPALALLGLDAEEVLKDPLGPEYLSGSKVMPGSEPAAHCYCGHQFGQFAGQLGDGAACYLGEVKAPAGQSPELLRENPTGRWEIQVKGAG 179          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y396_XANOP (UPF0061 protein PXO_00396 OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=PXO_00396 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.122e-18
Identity = 55/128 (42.97%), Postives = 72/128 (56.25%), Query Frame = 2
Query:  284 LEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            +  L++D+   ++LPG     +  REV  A ++ V P+  V  P L+A S  +A  L LD  E     F   F G     G  P+A  YGGHQFG WAGQLGDGRAI+LGE + +   R+ELQLK  G
Sbjct:    1 MTQLHFDNRLRQQLPGYQEEGARRREV-RAAWSAVMPTP-VAAPYLIAHSAEMAHVLGLDASEVASAAFAQVFGGNALYPGMQPWAVNYGGHQFGHWAGQLGDGRAISLGEAIGIDGGRYELQLKGAG 126          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y2718_XANOR (UPF0061 protein XOO2718 OS=Xanthomonas oryzae pv. oryzae GN=XOO2718 PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.122e-18
Identity = 55/128 (42.97%), Postives = 72/128 (56.25%), Query Frame = 2
Query:  284 LEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            +  L++D+   ++LPG     +  REV  A ++ V P+  V  P L+A S  +A  L LD  E     F   F G     G  P+A  YGGHQFG WAGQLGDGRAI+LGE + +   R+ELQLK  G
Sbjct:    1 MTQLHFDNRLRQQLPGYQEEGARRREV-RAAWSAVMPTP-VAAPYLIAHSAEMAHVLGLDASEVASAAFAQVFGGNALYPGMQPWAVNYGGHQFGHWAGQLGDGRAISLGEAIGIDGGRYELQLKGAG 126          
The following BLAST results are available for this feature:
BLAST of FC931575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
Y1894_XANCB1.146e-2046.40UPF0061 protein xcc-b100_1894 OS=Xanthomonas campe... [more]
SELO_HUMAN1.497e-2045.59Selenoprotein O OS=Homo sapiens GN=SELO PE=2 SV=3[more]
Y2619_XYLFA2.554e-2046.40UPF0061 protein XF_2619 OS=Xylella fastidiosa GN=X... [more]
Y2392_XANAC9.705e-2046.40UPF0061 protein XAC2392 OS=Xanthomonas axonopodis ... [more]
SELO_MOUSE1.268e-1944.12Selenoprotein O OS=Mus musculus GN=Selo PE=1 SV=3[more]
Y2589_XANC52.162e-1944.80UPF0061 protein XCV2589 OS=Xanthomonas campestris ... [more]
Y2793_FLAJ11.073e-1840.31UPF0061 protein Fjoh_2793 OS=Flavobacterium johnso... [more]
SELO_DANRE1.830e-1836.60Selenoprotein O OS=Danio rerio GN=selo PE=2 SV=2[more]
Y396_XANOP3.122e-1842.97UPF0061 protein PXO_00396 OS=Xanthomonas oryzae pv... [more]
Y2718_XANOR3.122e-1842.97UPF0061 protein XOO2718 OS=Xanthomonas oryzae pv. ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34106F07EF PostHarvP1 Citrus clementina cDNA clone C34106F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931575 ID=FC931575; Name=FC931575; organism=Citrus clementina; type=EST; length=691bp
CTCAACTAAACCACACCTCCTCTTCTCTTCACTCTCTTCTTCTTCTTCTT
CTCTCCGCCCTCGCCTCCCCAAATTCCCGTTCTACCCCGCCTACTTTACA
AAGTCTCCATCCTGTCCTTCCATCGCATGCCACGTCAGCACGACAGGCGG
CGGCGGTGCTGCGCAGATGGAGTCGAGTGCGTCTGTCGATTCGGTGACGC
ATGATTTGAAGAATCAGAGATTGGATACGGAAACGGAAACGGACGGCGGA
GATGAGAGCAAGATGACGAAGAAGCTGAAAGCTCTTGAGGATCTGAATTG
GGACCACTCGTTTGTTCGAGAGTTGCCTGGTGATCCCAGGACTGATTCTA
TCCCTCGTGAGGTATTGCATGCCTGTTATACTAAAGTTTCTCCGTCAGCT
GAAGTAGAAAATCCTCAGCTTGTTGCGTGGTCAGAATCAGTGGCCGATTC
TCTTGAGTTGGATCCTAAAGAATTTGAAAGACCAGATTTTCCCCTCTTTT
TTTCTGGGGCTACTCCTTTGGCGGGAGCGGTGCCATATGCTCAATGCTAC
GGTGGACATCAATTTGGCATGTGGGCTGGTCAGCTGGGTGATGGTCGGGC
AATAACTCTTGGCGAGATCCTGAATTTGAAGTCGGAAAGGTGGGAATTGC
AGCTTAAGGAGCTGGGAAGACTCCATATAGCCGCTTTGCTG
back to top