FC931575

Overview
NameFC931575
Unique NameFC931575
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y4863_METEP (UPF0061 protein Mext_4863 OS=Methylobacterium extorquens (strain PA1) GN=Mext_4863 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.367e-12
Identity = 41/97 (42.27%), Postives = 58/97 (59.79%), Query Frame = 2
Query:  377 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            + +V+P+A VE P+L+  + ++A  L LDP   E P+     +G     GA P A  Y GHQFG +  QLGDGRAI LGE++  +  R ++QLK  G
Sbjct:   19 FGRVAPTA-VEAPRLIRLNRALAVDLGLDPDRLESPEGVEVLAGQRVPEGAEPLAAAYAGHQFGQFVPQLGDGRAILLGEVVG-RDGRRDIQLKGSG 113          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y3508_BACC4 (UPF0061 protein BCB4264_A3508 OS=Bacillus cereus (strain B4264) GN=BCB4264_A3508 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.367e-12
Identity = 41/97 (42.27%), Postives = 59/97 (60.82%), Query Frame = 2
Query:  377 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            YT++ P+  V +P+LV  + S+A SL L P+E ++      F+G     GA P AQ Y GHQFG +   LGDGRA+ +GE +    ER+++QLK  G
Sbjct:   23 YTEIPPTP-VSSPELVKLNHSLAISLGLTPEELKKEAEIAIFAGNALPEGAHPLAQAYAGHQFGHF-NMLGDGRALLIGEQITPSGERFDIQLKGSG 117          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y2277_BORA1 (UPF0061 protein BAV2277 OS=Bordetella avium (strain 197N) GN=BAV2277 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.367e-12
Identity = 42/97 (43.30%), Postives = 53/97 (54.64%), Query Frame = 2
Query:  377 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            YT+++ +  +  P+L+  +   A  + LDP E     F    SG  PL G    A  Y GHQFG+WAGQLGDGRA  LGE+       WELQLK  G
Sbjct:   23 YTRLA-AQPLGRPRLLHANAEAAALIGLDPAELHTQAFLEVASGQRPLPGGDTLAAVYSGHQFGVWAGQLGDGRAHLLGEVRG-PGGSWELQLKGAG 117          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y2105_ENTS8 (UPF0061 protein ESA_02105 OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=ESA_02105 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.367e-12
Identity = 40/94 (42.55%), Postives = 55/94 (58.51%), Query Frame = 2
Query:  335 PRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGE 616
            PR  +  R+ L   YT+++P+  + N +L+  +  +A +LEL    F+       + G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE
Sbjct:    5 PRFIATWRDELPGFYTELTPTP-LNNSRLLCHNAPLAQALELPETLFDYQGPAGVWGGETLLPGMAPLAQVYSGHQFGVWAGQLGDGRGILLGE 97          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y1740_BACC2 (UPF0061 protein BCG9842_B1740 OS=Bacillus cereus (strain G9842) GN=BCG9842_B1740 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.367e-12
Identity = 41/97 (42.27%), Postives = 59/97 (60.82%), Query Frame = 2
Query:  377 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            YT++ P+  V +P+LV  + S+A SL L P+E ++      F+G     GA P AQ Y GHQFG +   LGDGRA+ +GE +    ER+++QLK  G
Sbjct:   23 YTEIPPTP-VSSPELVKLNHSLAISLGLTPEELKKEAEIAIFAGNALPEGAHPLAQAYAGHQFGHF-NMLGDGRALLIGEQITPSGERFDIQLKGSG 117          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y1334_CLOBA (UPF0061 protein CLH_1334 OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=CLH_1334 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.367e-12
Identity = 42/98 (42.86%), Postives = 59/98 (60.20%), Query Frame = 2
Query:  377 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            +++ +PS EV +  LV ++ES+A  L L  +  +  D   F SG   L   +P AQ Y GHQFG +   LGDGRAI LGE+ +   ER+++QLK  GR
Sbjct:   26 FSEQNPS-EVPSTNLVVFNESLASDLGLSEEFLQSDDGINFLSGNKILEDTIPIAQAYAGHQFGHFT-MLGDGRAILLGELKSQNGERFDIQLKGSGR 121          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y1157_DINSH (UPF0061 protein Dshi_1157 OS=Dinoroseobacter shibae (strain DFL 12) GN=Dshi_1157 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.367e-12
Identity = 44/111 (39.64%), Postives = 59/111 (53.15%), Query Frame = 2
Query:  350 IPREVLHAC-----YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            IP E  +A      + +++P+  V  P L+  +  +A  L LDP   E P+     +G     GAVP AQ Y GHQFG W  QLGDGRAI LGE+ +      ++QLK  G
Sbjct:    5 IPFEARYAALPDRFHAQLAPTP-VSAPGLIKVNHRLARELGLDPAALESPEGVAMLAGNAVPEGAVPIAQAYAGHQFGGWNPQLGDGRAILLGELRHADGALRDVQLKGSG 114          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y982_RHIME (UPF0061 protein R00982 OS=Rhizobium meliloti GN=R00982 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.703e-12
Identity = 42/98 (42.86%), Postives = 54/98 (55.10%), Query Frame = 2
Query:  377 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            Y +V P+   E P L+  +  +A  L LD +  ER D    FSG     GA P A  Y GHQFG +  QLGDGRAI LGE+ +    R ++QLK  G+
Sbjct:   18 YARVQPTPVAE-PWLIKLNRPLAGELGLDAEALER-DGAAIFSGNLVPEGAEPLAMAYAGHQFGTFVPQLGDGRAILLGEVTDAGGRRRDIQLKGAGQ 113          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y6641_PSEAB (UPF0061 protein PA14_66410 OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=PA14_66410 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.703e-12
Identity = 47/132 (35.61%), Postives = 67/132 (50.76%), Query Frame = 2
Query:  275 LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            +K+L+DL++D+ F R        D+   EVL        P AE   P+LV  S +    L+L  +  +   F   F G    + A P A  Y GHQFG +  +LGDGR + LGE++N   E W+L LK  G+
Sbjct:    1 MKSLDDLDFDNRFAR------LGDAFSTEVLP------DPIAE---PRLVVASPAALALLDLPAETSDEALFAELFGGHKLWSEAEPRAMVYSGHQFGSYNPRLGDGRGLLLGEVINQAGEHWDLHLKGAGQ 117          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y2480_SILPO (UPF0061 protein SPO2480 OS=Silicibacter pomeroyi GN=SPO2480 PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.703e-12
Identity = 44/98 (44.90%), Postives = 56/98 (57.14%), Query Frame = 2
Query:  377 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            YT  +P   V  P+LVA++  +A  L + P E E  +    F+G     GA P AQ Y GHQFG +  QLGDGRAI LGE+L     R ++QLK  GR
Sbjct:   19 YTAQAPQP-VRAPRLVAFNADLARLLGIAPGEVE--EMAQVFAGNAVPQGAEPLAQLYSGHQFGNYNPQLGDGRAILLGEVLGSDGIRRDIQLKGAGR 113          
The following BLAST results are available for this feature:
BLAST of FC931575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
Y4863_METEP4.367e-1242.27UPF0061 protein Mext_4863 OS=Methylobacterium exto... [more]
Y3508_BACC44.367e-1242.27UPF0061 protein BCB4264_A3508 OS=Bacillus cereus (... [more]
Y2277_BORA14.367e-1243.30UPF0061 protein BAV2277 OS=Bordetella avium (strai... [more]
Y2105_ENTS84.367e-1242.55UPF0061 protein ESA_02105 OS=Enterobacter sakazaki... [more]
Y1740_BACC24.367e-1242.27UPF0061 protein BCG9842_B1740 OS=Bacillus cereus (... [more]
Y1334_CLOBA4.367e-1242.86UPF0061 protein CLH_1334 OS=Clostridium botulinum ... [more]
Y1157_DINSH4.367e-1239.64UPF0061 protein Dshi_1157 OS=Dinoroseobacter shiba... [more]
Y982_RHIME5.703e-1242.86UPF0061 protein R00982 OS=Rhizobium meliloti GN=R0... [more]
Y6641_PSEAB5.703e-1235.61UPF0061 protein PA14_66410 OS=Pseudomonas aerugino... [more]
Y2480_SILPO5.703e-1244.90UPF0061 protein SPO2480 OS=Silicibacter pomeroyi G... [more]

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Properties
Property NameValue
Genbank descriptionC34106F07EF PostHarvP1 Citrus clementina cDNA clone C34106F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931575 ID=FC931575; Name=FC931575; organism=Citrus clementina; type=EST; length=691bp
CTCAACTAAACCACACCTCCTCTTCTCTTCACTCTCTTCTTCTTCTTCTT
CTCTCCGCCCTCGCCTCCCCAAATTCCCGTTCTACCCCGCCTACTTTACA
AAGTCTCCATCCTGTCCTTCCATCGCATGCCACGTCAGCACGACAGGCGG
CGGCGGTGCTGCGCAGATGGAGTCGAGTGCGTCTGTCGATTCGGTGACGC
ATGATTTGAAGAATCAGAGATTGGATACGGAAACGGAAACGGACGGCGGA
GATGAGAGCAAGATGACGAAGAAGCTGAAAGCTCTTGAGGATCTGAATTG
GGACCACTCGTTTGTTCGAGAGTTGCCTGGTGATCCCAGGACTGATTCTA
TCCCTCGTGAGGTATTGCATGCCTGTTATACTAAAGTTTCTCCGTCAGCT
GAAGTAGAAAATCCTCAGCTTGTTGCGTGGTCAGAATCAGTGGCCGATTC
TCTTGAGTTGGATCCTAAAGAATTTGAAAGACCAGATTTTCCCCTCTTTT
TTTCTGGGGCTACTCCTTTGGCGGGAGCGGTGCCATATGCTCAATGCTAC
GGTGGACATCAATTTGGCATGTGGGCTGGTCAGCTGGGTGATGGTCGGGC
AATAACTCTTGGCGAGATCCTGAATTTGAAGTCGGAAAGGTGGGAATTGC
AGCTTAAGGAGCTGGGAAGACTCCATATAGCCGCTTTGCTG
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