FC931575

Overview
NameFC931575
Unique NameFC931575
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y1451_AGRRK (UPF0061 protein Arad_1451 OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=Arad_1451 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.703e-12
Identity = 39/88 (44.32%), Postives = 52/88 (59.09%), Query Frame = 2
Query:  404 VENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            V  P+L+ ++  +A  L LD +  ER D    FSG   L G+ P A  Y GHQFG +  QLGDGRAI LGE+++    R ++QLK  G
Sbjct:   38 VAAPRLIKFNSVLASELGLDAEVLER-DGAAIFSGNALLPGSQPLAMAYAGHQFGGFVPQLGDGRAILLGEVIDRNGRRRDIQLKGAG 124          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y1355_RHIL3 (UPF0061 protein RL1355 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=RL1355 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.703e-12
Identity = 41/93 (44.09%), Postives = 57/93 (61.29%), Query Frame = 2
Query:  389 SPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            +P+A  E P L+  +E++A  L LD +   R D    FSG     GA P A  Y GHQFG ++ QLGDGRAI LGE+++   +R+++QLK  G
Sbjct:   32 APTAVAE-PWLIKLNEALAAELGLDVEALRR-DGAAIFSGNLVPEGAEPLAMAYAGHQFGGFSPQLGDGRAILLGEVVDRSGKRYDIQLKGAG 122          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y3499_BACCR (UPF0061 protein BC_3499 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=BC_3499 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.448e-12
Identity = 41/97 (42.27%), Postives = 59/97 (60.82%), Query Frame = 2
Query:  377 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            YT++ P+  V +P+LV  + S+A SL L P+E ++      F+G     GA P AQ Y GHQFG +   LGDGRA+ +GE +    ER+++QLK  G
Sbjct:   23 YTEIPPTP-VSSPELVKLNHSLAISLGLTPEELKKEAEIAIFAGNGLPEGAHPLAQAYAGHQFGHF-NMLGDGRALLIGEQITPSGERFDIQLKGSG 117          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y3130_DESAD (UPF0061 protein Desal_3130 OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=Desal_3130 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.448e-12
Identity = 36/98 (36.73%), Postives = 60/98 (61.22%), Query Frame = 2
Query:  377 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            Y +++P+  V++P+++  +  +A  +E    E +  +    FSG  P  G+ P AQ Y GHQFG +  QLGDGRA+ LGE ++   +R+++QLK  G+
Sbjct:   23 YQRINPTP-VKHPRIILVNRELAGEMEFPLPETDA-ELAELFSGNKPPQGSEPLAQVYAGHQFGNFVPQLGDGRAVLLGEFVSSSGKRYDIQLKGAGQ 118          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y2495_RHOP2 (UPF0061 protein RPB_2495 OS=Rhodopseudomonas palustris (strain HaA2) GN=RPB_2495 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.448e-12
Identity = 38/98 (38.78%), Postives = 55/98 (56.12%), Query Frame = 2
Query:  377 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            + +V+P+  V  P+L+  +  +A  L LDP   + P+     +G     GA   A  Y GHQFG +  QLGDGRAI LGE+++    R ++QLK  GR
Sbjct:   19 FARVAPTP-VAAPRLIKLNRPLAQRLGLDPDRLDSPEGAEILAGTRVPEGAASIAMAYAGHQFGNFVPQLGDGRAILLGEVIDRDGVRRDIQLKGSGR 115          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y2335_RHOPB (UPF0061 protein RPC_2335 OS=Rhodopseudomonas palustris (strain BisB18) GN=RPC_2335 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.448e-12
Identity = 38/97 (39.18%), Postives = 55/97 (56.70%), Query Frame = 2
Query:  377 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            + +V+P+  V  P+L+  +  +A  L LDP   + P+     +G     GA P A  Y GHQFG +  QLGDGRAI LGE+++    R ++QLK  G
Sbjct:   19 FARVAPTP-VATPRLIKLNRPLARELGLDPDRLDSPEGAEILAGKRIPEGADPIAMAYAGHQFGNFVPQLGDGRAILLGEVIDQNGVRRDIQLKGSG 114          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y3863_BRASB (UPF0061 protein BBta_3863 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=BBta_3863 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.728e-12
Identity = 38/97 (39.18%), Postives = 56/97 (57.73%), Query Frame = 2
Query:  377 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            + +V+P+  V  P+L+  +  +A  L L+P E E  +     +G T   GA P A  Y GHQFG +  QLGDGRA+ LGE+++    R ++QLK  G
Sbjct:   19 FARVAPTP-VAAPRLIKLNRPLAAELGLNPAELETAEGAEILAGKTVPEGAEPIAMAYAGHQFGHFVPQLGDGRAVLLGEVVDKNGVRRDIQLKGSG 114          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y2935_VARPS (UPF0061 protein Vapar_2935 OS=Variovorax paradoxus (strain S110) GN=Vapar_2935 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.728e-12
Identity = 44/101 (43.56%), Postives = 59/101 (58.42%), Query Frame = 2
Query:  371 ACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLF-FSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            A  T++ P+   + P  V  SE+ A  L L P ++ + +  L   +G  P+AG +P+A  Y GHQFG+WAGQLGDGRAI LGE         E+QLK  GR
Sbjct:   27 AFLTELRPTPLPDPPYWVGHSEAAARLLGL-PADWRQSEGTLAALTGNLPVAGTLPFATVYSGHQFGVWAGQLGDGRAIMLGE----TEGGLEVQLKGAGR 122          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y1310_RHIE6 (UPF0061 protein RHECIAT_CH0001310 OS=Rhizobium etli (strain CIAT 652) GN=RHECIAT_CH0001310 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.728e-12
Identity = 39/89 (43.82%), Postives = 52/89 (58.43%), Query Frame = 2
Query:  401 EVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            +V  P L+  +E +A  L LD +   R D    FSG     GA P A  Y GHQFG ++ QLGDGRAI LGE+++    R+++QLK  G
Sbjct:   35 QVAEPWLIKLNEPLAAELGLDVEALRR-DGAAIFSGNLVPEGAQPLAMAYAGHQFGGFSPQLGDGRAILLGEVIDRSGRRFDIQLKGAG 122          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y577_RHOSR (UPF0061 protein RHA1_ro00577 OS=Rhodococcus sp. (strain RHA1) GN=RHA1_ro00577 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.271e-11
Identity = 39/90 (43.33%), Postives = 51/90 (56.67%), Query Frame = 2
Query:  398 AEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            A   +P L+  +E +A SL LD +     D     SG+T  AGA P A  Y GHQFG +A  LGDGRA+ LGE+ +   +R +L LK  G
Sbjct:   48 AHAPDPTLLVLNEQLAASLRLDVQTLRSEDGVGVLSGSTAPAGAKPVAMAYAGHQFGGYAPLLGDGRALLLGELTSSDGQRVDLHLKGSG 137          
The following BLAST results are available for this feature:
BLAST of FC931575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
Y1451_AGRRK5.703e-1244.32UPF0061 protein Arad_1451 OS=Agrobacterium radioba... [more]
Y1355_RHIL35.703e-1244.09UPF0061 protein RL1355 OS=Rhizobium leguminosarum ... [more]
Y3499_BACCR7.448e-1242.27UPF0061 protein BC_3499 OS=Bacillus cereus (strain... [more]
Y3130_DESAD7.448e-1236.73UPF0061 protein Desal_3130 OS=Desulfovibrio salexi... [more]
Y2495_RHOP27.448e-1238.78UPF0061 protein RPB_2495 OS=Rhodopseudomonas palus... [more]
Y2335_RHOPB7.448e-1239.18UPF0061 protein RPC_2335 OS=Rhodopseudomonas palus... [more]
Y3863_BRASB9.728e-1239.18UPF0061 protein BBta_3863 OS=Bradyrhizobium sp. (s... [more]
Y2935_VARPS9.728e-1243.56UPF0061 protein Vapar_2935 OS=Variovorax paradoxus... [more]
Y1310_RHIE69.728e-1243.82UPF0061 protein RHECIAT_CH0001310 OS=Rhizobium etl... [more]
Y577_RHOSR1.271e-1143.33UPF0061 protein RHA1_ro00577 OS=Rhodococcus sp. (s... [more]

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Properties
Property NameValue
Genbank descriptionC34106F07EF PostHarvP1 Citrus clementina cDNA clone C34106F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931575 ID=FC931575; Name=FC931575; organism=Citrus clementina; type=EST; length=691bp
CTCAACTAAACCACACCTCCTCTTCTCTTCACTCTCTTCTTCTTCTTCTT
CTCTCCGCCCTCGCCTCCCCAAATTCCCGTTCTACCCCGCCTACTTTACA
AAGTCTCCATCCTGTCCTTCCATCGCATGCCACGTCAGCACGACAGGCGG
CGGCGGTGCTGCGCAGATGGAGTCGAGTGCGTCTGTCGATTCGGTGACGC
ATGATTTGAAGAATCAGAGATTGGATACGGAAACGGAAACGGACGGCGGA
GATGAGAGCAAGATGACGAAGAAGCTGAAAGCTCTTGAGGATCTGAATTG
GGACCACTCGTTTGTTCGAGAGTTGCCTGGTGATCCCAGGACTGATTCTA
TCCCTCGTGAGGTATTGCATGCCTGTTATACTAAAGTTTCTCCGTCAGCT
GAAGTAGAAAATCCTCAGCTTGTTGCGTGGTCAGAATCAGTGGCCGATTC
TCTTGAGTTGGATCCTAAAGAATTTGAAAGACCAGATTTTCCCCTCTTTT
TTTCTGGGGCTACTCCTTTGGCGGGAGCGGTGCCATATGCTCAATGCTAC
GGTGGACATCAATTTGGCATGTGGGCTGGTCAGCTGGGTGATGGTCGGGC
AATAACTCTTGGCGAGATCCTGAATTTGAAGTCGGAAAGGTGGGAATTGC
AGCTTAAGGAGCTGGGAAGACTCCATATAGCCGCTTTGCTG
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