FC931575

Overview
NameFC931575
Unique NameFC931575
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y2395_RHOFD (UPF0061 protein Rfer_2395 OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=Rfer_2395 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.271e-11
Identity = 43/97 (44.33%), Postives = 51/97 (52.58%), Query Frame = 2
Query:  377 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            YT ++P   +  P  V  S S A  L L     + P+     +G  P+AG  P A  Y GHQFG WAGQLGDGRAI LGE   L     E+QLK  G
Sbjct:   29 YTPLAPWP-LPAPYWVGRSTSTARELGLSESWLDSPELLQVLTGNQPMAGTQPLASVYSGHQFGQWAGQLGDGRAILLGETGGL-----EVQLKGSG 119          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y1564_SPHAL (UPF0061 protein Sala_1564 OS=Sphingopyxis alaskensis GN=Sala_1564 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.271e-11
Identity = 36/91 (39.56%), Postives = 56/91 (61.54%), Query Frame = 2
Query:  395 SAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            +A+   P+L+A+++++A+ L  D +  +  +    FSG     GA P A  Y GHQFG ++ QLGDGRA+ LGEI+     R+++QLK  G
Sbjct:   22 AAKPSAPRLLAFNDALAERLGFDRRGVDADELARVFSGEELPEGAAPIALAYAGHQFGHFSPQLGDGRALLLGEIVAPDGARFDIQLKGSG 112          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y857_RHILW (UPF0061 protein Rleg2_0857 OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=Rleg2_0857 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.659e-11
Identity = 41/93 (44.09%), Postives = 55/93 (59.14%), Query Frame = 2
Query:  389 SPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            +P+A  E P L+  +E +A  L LD +   R D    FSG     GA P A  Y GHQFG ++ QLGDGRAI LGE+++    R+++QLK  G
Sbjct:   32 TPTAVAE-PWLIKLNEPLAVELGLDVETLRR-DGAAIFSGNLVPEGAEPLAMAYAGHQFGGFSPQLGDGRAILLGEVVDRSGRRYDIQLKGAG 122          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y737_YERPP (UPF0061 protein YPDSF_0737 OS=Yersinia pestis (strain Pestoides F) GN=YPDSF_0737 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.659e-11
Identity = 40/94 (42.55%), Postives = 53/94 (56.38%), Query Frame = 2
Query:  335 PRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGE 616
            P  D+     L   YT++ P+  ++  +L+  S+ +A  L LD   F  P   ++ +G   L G  P AQ Y GHQFGMWAGQLGDGR I LGE
Sbjct:    9 PEFDNSYARQLSGFYTRLQPTP-LKGARLLYHSKPLAQELGLDAHWFTEPKTAVW-AGEALLPGMEPLAQVYSGHQFGMWAGQLGDGRGILLGE 100          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y2396_YERPB (UPF0061 protein YPTS_2396 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=YPTS_2396 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.659e-11
Identity = 40/94 (42.55%), Postives = 53/94 (56.38%), Query Frame = 2
Query:  335 PRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGE 616
            P  D+     L   YT++ P+  ++  +L+  S+ +A  L LD   F  P   ++ +G   L G  P AQ Y GHQFGMWAGQLGDGR I LGE
Sbjct:    9 PEFDNSYARQLSGFYTRLQPTP-LKGARLLYHSKPLAQELGLDAHWFTEPKTAVW-AGEALLPGMEPLAQVYSGHQFGMWAGQLGDGRGILLGE 100          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y2321_YERPS (UPF0061 protein YPTB2321 OS=Yersinia pseudotuberculosis GN=YPTB2321 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.659e-11
Identity = 40/94 (42.55%), Postives = 53/94 (56.38%), Query Frame = 2
Query:  335 PRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGE 616
            P  D+     L   YT++ P+  ++  +L+  S+ +A  L LD   F  P   ++ +G   L G  P AQ Y GHQFGMWAGQLGDGR I LGE
Sbjct:    9 PEFDNSYARQLSGFYTRLQPTP-LKGARLLYHSKPLAQELGLDAHWFTEPKTAVW-AGEALLPGMEPLAQVYSGHQFGMWAGQLGDGRGILLGE 100          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y2079_ALKMQ (UPF0061 protein Amet_2079 OS=Alkaliphilus metalliredigens (strain QYMF) GN=Amet_2079 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.659e-11
Identity = 42/97 (43.30%), Postives = 58/97 (59.79%), Query Frame = 2
Query:  377 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            +T ++P+  V  P+LV  +E +A  L LD +  +  D     +G   L GA+P AQ Y GHQFG +A  LGDGRA+ LGE +    ER++LQLK  G
Sbjct:   26 FTIITPNP-VSAPKLVILNEPLATVLGLDSEALQSKDSLEVLAGNRALEGALPLAQAYAGHQFGHFA-LLGDGRALLLGEQITPSGERFDLQLKGSG 120          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y1840_YERPY (UPF0061 protein YPK_1840 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=YPK_1840 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.659e-11
Identity = 40/94 (42.55%), Postives = 53/94 (56.38%), Query Frame = 2
Query:  335 PRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGE 616
            P  D+     L   YT++ P+  ++  +L+  S+ +A  L LD   F  P   ++ +G   L G  P AQ Y GHQFGMWAGQLGDGR I LGE
Sbjct:    9 PEFDNSYARQLSGFYTRLQPTP-LKGARLLYHSKPLAQELGLDAHWFTEPKTAVW-AGEALLPGMEPLAQVYSGHQFGMWAGQLGDGRGILLGE 100          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y1734_YERP3 (UPF0061 protein YpsIP31758_1734 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=YpsIP31758_1734 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.659e-11
Identity = 40/94 (42.55%), Postives = 53/94 (56.38%), Query Frame = 2
Query:  335 PRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGE 616
            P  D+     L   YT++ P+  ++  +L+  S+ +A  L LD   F  P   ++ +G   L G  P AQ Y GHQFGMWAGQLGDGR I LGE
Sbjct:    5 PEFDNSYARQLSGFYTRLQPTP-LKGARLLYHSKPLAQELGLDAHWFTEPKTAVW-AGEALLPGMEPLAQVYSGHQFGMWAGQLGDGRGILLGE 96          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y1223_RHIEC (UPF0061 protein RHE_CH01223 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=RHE_CH01223 PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.659e-11
Identity = 38/89 (42.70%), Postives = 53/89 (59.55%), Query Frame = 2
Query:  404 VENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            V  P L+  +E +A+ L LD +   R D    FSG     GA+P A  Y GHQFG ++  LGDGRAI LGE++    +R+++QLK  G+
Sbjct:   36 VAEPWLIKLNEPLAEELGLDVEVLRR-DGAAIFSGNLVPEGALPLAMAYAGHQFGGFSPVLGDGRAILLGEVVGRNGKRYDIQLKGAGQ 123          
The following BLAST results are available for this feature:
BLAST of FC931575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
Y2395_RHOFD1.271e-1144.33UPF0061 protein Rfer_2395 OS=Rhodoferax ferrireduc... [more]
Y1564_SPHAL1.271e-1139.56UPF0061 protein Sala_1564 OS=Sphingopyxis alaskens... [more]
Y857_RHILW1.659e-1144.09UPF0061 protein Rleg2_0857 OS=Rhizobium leguminosa... [more]
Y737_YERPP1.659e-1142.55UPF0061 protein YPDSF_0737 OS=Yersinia pestis (str... [more]
Y2396_YERPB1.659e-1142.55UPF0061 protein YPTS_2396 OS=Yersinia pseudotuberc... [more]
Y2321_YERPS1.659e-1142.55UPF0061 protein YPTB2321 OS=Yersinia pseudotubercu... [more]
Y2079_ALKMQ1.659e-1143.30UPF0061 protein Amet_2079 OS=Alkaliphilus metallir... [more]
Y1840_YERPY1.659e-1142.55UPF0061 protein YPK_1840 OS=Yersinia pseudotubercu... [more]
Y1734_YERP31.659e-1142.55UPF0061 protein YpsIP31758_1734 OS=Yersinia pseudo... [more]
Y1223_RHIEC1.659e-1142.70UPF0061 protein RHE_CH01223 OS=Rhizobium etli (str... [more]

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Properties
Property NameValue
Genbank descriptionC34106F07EF PostHarvP1 Citrus clementina cDNA clone C34106F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931575 ID=FC931575; Name=FC931575; organism=Citrus clementina; type=EST; length=691bp
CTCAACTAAACCACACCTCCTCTTCTCTTCACTCTCTTCTTCTTCTTCTT
CTCTCCGCCCTCGCCTCCCCAAATTCCCGTTCTACCCCGCCTACTTTACA
AAGTCTCCATCCTGTCCTTCCATCGCATGCCACGTCAGCACGACAGGCGG
CGGCGGTGCTGCGCAGATGGAGTCGAGTGCGTCTGTCGATTCGGTGACGC
ATGATTTGAAGAATCAGAGATTGGATACGGAAACGGAAACGGACGGCGGA
GATGAGAGCAAGATGACGAAGAAGCTGAAAGCTCTTGAGGATCTGAATTG
GGACCACTCGTTTGTTCGAGAGTTGCCTGGTGATCCCAGGACTGATTCTA
TCCCTCGTGAGGTATTGCATGCCTGTTATACTAAAGTTTCTCCGTCAGCT
GAAGTAGAAAATCCTCAGCTTGTTGCGTGGTCAGAATCAGTGGCCGATTC
TCTTGAGTTGGATCCTAAAGAATTTGAAAGACCAGATTTTCCCCTCTTTT
TTTCTGGGGCTACTCCTTTGGCGGGAGCGGTGCCATATGCTCAATGCTAC
GGTGGACATCAATTTGGCATGTGGGCTGGTCAGCTGGGTGATGGTCGGGC
AATAACTCTTGGCGAGATCCTGAATTTGAAGTCGGAAAGGTGGGAATTGC
AGCTTAAGGAGCTGGGAAGACTCCATATAGCCGCTTTGCTG
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