FC931575

Overview
NameFC931575
Unique NameFC931575
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931575_ssr35 microsatellite FC931575_ssr35:35..52. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15355 contig Ccv1_Contig15355:1..692. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y1045_ALHEH (UPF0061 protein Mlg_1045 OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=Mlg_1045 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.305e-11
Identity = 38/97 (39.18%), Postives = 53/97 (54.64%), Query Frame = 2
Query:  377 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            + +V P+  V  P LV  +E +A++L L+            F+G     GA P A  Y GHQFG W  QLGDGRA+ LGE+++    R ++QLK  G
Sbjct:   21 FARVRPTP-VAQPGLVRLNEPLAEALGLEVAALRGKAGLAMFAGNRLPEGAEPIALAYAGHQFGQWVPQLGDGRAVLLGEVVDRDGRRRDIQLKGSG 116          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: YDIU_ECOSE (UPF0061 protein ydiU OS=Escherichia coli (strain SE11) GN=ydiU PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 41/104 (39.42%), Postives = 56/104 (53.85%), Query Frame = 2
Query:  356 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            R+ L   YT +SP+  + N +L+  +  +A++L +    F+       + G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LK  G
Sbjct:   10 RDELPETYTALSPTP-LNNARLIWHNTELANTLSIPSSLFKNAAG--VWGGETLLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAG 110          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y1901_RHOS5 (UPF0061 protein Rsph17025_1901 OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=Rsph17025_1901 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 39/92 (42.39%), Postives = 52/92 (56.52%), Query Frame = 2
Query:  395 SAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            +A V  P+L+  +  +A  L LD    E     +F SG     GA P AQ Y GHQFG ++ QLGDGRA+ +GE+ +    R +LQLK  GR
Sbjct:   22 AAPVPAPRLLRLNRGLAGELGLDADRLEAEGAAIF-SGKRLPEGAHPLAQAYAGHQFGGFSPQLGDGRALLIGEVTDRSGRRRDLQLKGSGR 112          
The following BLAST results are available for this feature:
BLAST of FC931575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
Y1045_ALHEH6.305e-1139.18UPF0061 protein Mlg_1045 OS=Alkalilimnicola ehrlic... [more]
YDIU_ECOSE8.235e-1139.42UPF0061 protein ydiU OS=Escherichia coli (strain S... [more]
Y1901_RHOS58.235e-1142.39UPF0061 protein Rsph17025_1901 OS=Rhodobacter spha... [more]

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Properties
Property NameValue
Genbank descriptionC34106F07EF PostHarvP1 Citrus clementina cDNA clone C34106F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931575 ID=FC931575; Name=FC931575; organism=Citrus clementina; type=EST; length=691bp
CTCAACTAAACCACACCTCCTCTTCTCTTCACTCTCTTCTTCTTCTTCTT
CTCTCCGCCCTCGCCTCCCCAAATTCCCGTTCTACCCCGCCTACTTTACA
AAGTCTCCATCCTGTCCTTCCATCGCATGCCACGTCAGCACGACAGGCGG
CGGCGGTGCTGCGCAGATGGAGTCGAGTGCGTCTGTCGATTCGGTGACGC
ATGATTTGAAGAATCAGAGATTGGATACGGAAACGGAAACGGACGGCGGA
GATGAGAGCAAGATGACGAAGAAGCTGAAAGCTCTTGAGGATCTGAATTG
GGACCACTCGTTTGTTCGAGAGTTGCCTGGTGATCCCAGGACTGATTCTA
TCCCTCGTGAGGTATTGCATGCCTGTTATACTAAAGTTTCTCCGTCAGCT
GAAGTAGAAAATCCTCAGCTTGTTGCGTGGTCAGAATCAGTGGCCGATTC
TCTTGAGTTGGATCCTAAAGAATTTGAAAGACCAGATTTTCCCCTCTTTT
TTTCTGGGGCTACTCCTTTGGCGGGAGCGGTGCCATATGCTCAATGCTAC
GGTGGACATCAATTTGGCATGTGGGCTGGTCAGCTGGGTGATGGTCGGGC
AATAACTCTTGGCGAGATCCTGAATTTGAAGTCGGAAAGGTGGGAATTGC
AGCTTAAGGAGCTGGGAAGACTCCATATAGCCGCTTTGCTG
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