FC931575

Overview
NameFC931575
Unique NameFC931575
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y2563_XANOM (UPF0061 protein XOO2563 OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=XOO2563 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.122e-18
Identity = 55/128 (42.97%), Postives = 72/128 (56.25%), Query Frame = 2
Query:  284 LEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            +  L++D+   ++LPG     +  REV  A ++ V P+  V  P L+A S  +A  L LD  E     F   F G     G  P+A  YGGHQFG WAGQLGDGRAI+LGE + +   R+ELQLK  G
Sbjct:    1 MTQLHFDNRLRQQLPGYQEEGARRREV-RAAWSAVMPTP-VAAPYLIAHSAEMAHVLGLDASEVASAAFAQVFGGNALYPGMQPWAVNYGGHQFGHWAGQLGDGRAISLGEAIGIDGGRYELQLKGAG 126          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y2147_CYTH3 (UPF0061 protein CHU_2147 OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=CHU_2147 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.122e-18
Identity = 54/121 (44.63%), Postives = 66/121 (54.55%), Query Frame = 2
Query:  305 HSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            ++F    PGD   ++  R+     Y  V P+  V +PQL+AWS  VA+ L L   E   P+  L   G T      PYA CY GHQFG WAGQLGDGRAI+LG      S  +ELQLK  G
Sbjct:   11 NTFTETFPGDLSMNNTTRQTPGVLYCSVLPTP-VHHPQLLAWSADVAEMLGL---ESPVPEDVLILGGNTVNPTMKPYASCYAGHQFGNWAGQLGDGRAISLGFCSGKDSMEYELQLKGAG 127          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y1944_BURCJ (UPF0061 protein BceJ2315_19440 OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=BceJ2315_19440 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.452e-17
Identity = 46/96 (47.92%), Postives = 60/96 (62.50%), Query Frame = 2
Query:  392 PSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL---AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            P+A +  P +V +S+ VA  L+L P    +P F   F+G       A A+PYA  Y GHQFG+WAGQLGDGRA+T+GE+      R+ELQLK  GR
Sbjct:   41 PAAPLAAPYVVGFSDEVAQLLDLPPTLAAQPGFAELFTGNPTRDWPANAMPYASVYSGHQFGVWAGQLGDGRALTIGELPGTDGRRYELQLKGGGR 136          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y6171_BURCA (UPF0061 protein Bcen_6171 OS=Burkholderia cenocepacia (strain AU 1054) GN=Bcen_6171 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.508e-17
Identity = 46/96 (47.92%), Postives = 60/96 (62.50%), Query Frame = 2
Query:  392 PSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL---AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            P+A +  P +V +S+ VA  L+L P    +P F   F+G       A A+PYA  Y GHQFG+WAGQLGDGRA+T+GE+      R+ELQLK  GR
Sbjct:   41 PAAPLAAPYVVGFSDDVAQLLDLPPSIAAQPGFAELFAGNPTRDWPAHAMPYASVYSGHQFGVWAGQLGDGRALTIGELPGTDGRRYELQLKGGGR 136          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y1908_BURCH (UPF0061 protein Bcen2424_1908 OS=Burkholderia cenocepacia (strain HI2424) GN=Bcen2424_1908 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.508e-17
Identity = 46/96 (47.92%), Postives = 60/96 (62.50%), Query Frame = 2
Query:  392 PSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL---AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            P+A +  P +V +S+ VA  L+L P    +P F   F+G       A A+PYA  Y GHQFG+WAGQLGDGRA+T+GE+      R+ELQLK  GR
Sbjct:   41 PAAPLAAPYVVGFSDDVAQLLDLPPSIAAQPGFAELFAGNPTRDWPAHAMPYASVYSGHQFGVWAGQLGDGRALTIGELPGTDGRRYELQLKGGGR 136          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y1931_BURCC (UPF0061 protein Bcenmc03_1931 OS=Burkholderia cenocepacia (strain MC0-3) GN=Bcenmc03_1931 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.888e-17
Identity = 46/96 (47.92%), Postives = 60/96 (62.50%), Query Frame = 2
Query:  392 PSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL---AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            P+A +  P +V +S+ VA  L+L P    +P F   F+G       A A+PYA  Y GHQFG+WAGQLGDGRA+T+GE+      R+ELQLK  GR
Sbjct:   41 PAAPLAAPYVVGFSDDVAQLLDLPPAIAAQPGFAELFAGNPTRDWPAHAMPYASVYSGHQFGVWAGQLGDGRALTIGELPGTDGRRYELQLKGGGR 136          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y5209_BURS3 (UPF0061 protein Bcep18194_A5209 OS=Burkholderia sp. (strain 383) GN=Bcep18194_A5209 PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.004e-16
Identity = 46/96 (47.92%), Postives = 58/96 (60.42%), Query Frame = 2
Query:  392 PSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL---AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            P+A +  P +V +S  VA  L+L P    +P F   F+G       A A+PYA  Y GHQFG+WAGQLGDGRA+T+GE       R+ELQLK  GR
Sbjct:   41 PAAPLAAPYVVGFSGEVAQLLDLPPSIAAQPGFAELFAGNPTRDWPANAMPYASVYSGHQFGVWAGQLGDGRALTIGERTGTDGRRYELQLKGSGR 136          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: YE35_SCHPO (UPF0061 protein C20G4.05c OS=Schizosaccharomyces pombe GN=SPAC20G4.05c PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.502e-16
Identity = 57/152 (37.50%), Postives = 83/152 (54.61%), Query Frame = 2
Query:  263 MTKKLKALEDLNWDHSFVRELPGDPRTDSIPR------EVLHA--------CYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGAT-PLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKS-ERWELQLKELGR 670
            M+KKLK   DL    +F   LP DP   ++         +LH          +T ++PS +  N QL+A+S S   SL L+  E +   F     G+   +    P+AQCYGG+QFG WAGQLGDGR ++L E+ N ++ +R+E+Q+K  GR
Sbjct:    1 MSKKLK---DLPVSSTFTSNLPPDPLVPTVQAMKKADDRILHVPRFVEGGGLFTYLTPSLKA-NSQLLAYSPSSVKSLGLEESETQTEAFQQLVVGSNVDVNKCCPWAQCYGGYQFGDWAGQLGDGRVVSLCELTNPETGKRFEIQVKGAGR 148          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y5674_BURM9 (UPF0061 protein BMA10229_A3374 OS=Burkholderia mallei (strain NCTC 10229) GN=BMA10229_A3374 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.110e-15
Identity = 48/115 (41.74%), Postives = 66/115 (57.39%), Query Frame = 2
Query:  335 PRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL---AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            PR D+  +  L A +    P+A +  P +V +S+  A  L L+P   + P F   F G         ++PYA  Y GHQFG+WAGQLGDGRA+T+GE+ +    R+ELQLK  GR
Sbjct:   24 PRDDAFQQ--LGAAFVTRLPAAPLPAPYVVGFSDDAARMLGLEPALRDAPGFAELFCGNPTRDWPQASLPYASVYSGHQFGVWAGQLGDGRALTIGELAH-DGRRYELQLKGAGR 135          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y486_PSEF5 (UPF0061 protein PFL_0486 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=PFL_0486 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.110e-15
Identity = 54/132 (40.91%), Postives = 68/132 (51.52%), Query Frame = 2
Query:  275 LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            +KAL++L +D+ F R   GD            A  T V P   ++NP+LVA S      L+LDP   E P F   F G    A A P A  Y GHQFG +  QLGDGR + LGE+ N   E W+L LK  G+
Sbjct:    1 MKALDELTFDNRFARL--GD------------AFSTHVLPEP-LDNPRLVAASPGAMALLDLDPAVAETPVFAELFGGHKLWAEAEPRAMVYSGHQFGSYNPQLGDGRGLLLGEVYNQAGEHWDLHLKGAGQ 117          
The following BLAST results are available for this feature:
BLAST of FC931575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
Y2563_XANOM3.122e-1842.97UPF0061 protein XOO2563 OS=Xanthomonas oryzae pv. ... [more]
Y2147_CYTH33.122e-1844.63UPF0061 protein CHU_2147 OS=Cytophaga hutchinsonii... [more]
Y1944_BURCJ3.452e-1747.92UPF0061 protein BceJ2315_19440 OS=Burkholderia cep... [more]
Y6171_BURCA4.508e-1747.92UPF0061 protein Bcen_6171 OS=Burkholderia cenocepa... [more]
Y1908_BURCH4.508e-1747.92UPF0061 protein Bcen2424_1908 OS=Burkholderia ceno... [more]
Y1931_BURCC5.888e-1747.92UPF0061 protein Bcenmc03_1931 OS=Burkholderia ceno... [more]
Y5209_BURS31.004e-1647.92UPF0061 protein Bcep18194_A5209 OS=Burkholderia sp... [more]
YE35_SCHPO8.502e-1637.50UPF0061 protein C20G4.05c OS=Schizosaccharomyces p... [more]
Y5674_BURM91.110e-1541.74UPF0061 protein BMA10229_A3374 OS=Burkholderia mal... [more]
Y486_PSEF51.110e-1540.91UPF0061 protein PFL_0486 OS=Pseudomonas fluorescen... [more]

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Properties
Property NameValue
Genbank descriptionC34106F07EF PostHarvP1 Citrus clementina cDNA clone C34106F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931575 ID=FC931575; Name=FC931575; organism=Citrus clementina; type=EST; length=691bp
CTCAACTAAACCACACCTCCTCTTCTCTTCACTCTCTTCTTCTTCTTCTT
CTCTCCGCCCTCGCCTCCCCAAATTCCCGTTCTACCCCGCCTACTTTACA
AAGTCTCCATCCTGTCCTTCCATCGCATGCCACGTCAGCACGACAGGCGG
CGGCGGTGCTGCGCAGATGGAGTCGAGTGCGTCTGTCGATTCGGTGACGC
ATGATTTGAAGAATCAGAGATTGGATACGGAAACGGAAACGGACGGCGGA
GATGAGAGCAAGATGACGAAGAAGCTGAAAGCTCTTGAGGATCTGAATTG
GGACCACTCGTTTGTTCGAGAGTTGCCTGGTGATCCCAGGACTGATTCTA
TCCCTCGTGAGGTATTGCATGCCTGTTATACTAAAGTTTCTCCGTCAGCT
GAAGTAGAAAATCCTCAGCTTGTTGCGTGGTCAGAATCAGTGGCCGATTC
TCTTGAGTTGGATCCTAAAGAATTTGAAAGACCAGATTTTCCCCTCTTTT
TTTCTGGGGCTACTCCTTTGGCGGGAGCGGTGCCATATGCTCAATGCTAC
GGTGGACATCAATTTGGCATGTGGGCTGGTCAGCTGGGTGATGGTCGGGC
AATAACTCTTGGCGAGATCCTGAATTTGAAGTCGGAAAGGTGGGAATTGC
AGCTTAAGGAGCTGGGAAGACTCCATATAGCCGCTTTGCTG
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