FC931575

Overview
NameFC931575
Unique NameFC931575
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931575_ssr35 microsatellite FC931575_ssr35:35..52. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15355 contig Ccv1_Contig15355:1..692. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y2457_BURP1 (UPF0061 protein BURPS1710b_2457 OS=Burkholderia pseudomallei (strain 1710b) GN=BURPS1710b_2457 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.110e-15
Identity = 48/115 (41.74%), Postives = 66/115 (57.39%), Query Frame = 2
Query:  335 PRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL---AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            PR D+  +  L A +    P+A +  P +V +S+  A  L L+P   + P F   F G         ++PYA  Y GHQFG+WAGQLGDGRA+T+GE+ +    R+ELQLK  GR
Sbjct:   24 PRDDAFQQ--LGAAFVTRLPAAPLPAPYVVGFSDDAARMLGLEPALRDAPGFAELFCGNPTRDWPQASLPYASVYSGHQFGVWAGQLGDGRALTIGELAH-DGRRYELQLKGAGR 135          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y2336_BURP0 (UPF0061 protein BURPS1106A_2336 OS=Burkholderia pseudomallei (strain 1106a) GN=BURPS1106A_2336 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.110e-15
Identity = 48/115 (41.74%), Postives = 66/115 (57.39%), Query Frame = 2
Query:  335 PRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL---AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            PR D+  +  L A +    P+A +  P +V +S+  A  L L+P   + P F   F G         ++PYA  Y GHQFG+WAGQLGDGRA+T+GE+ +    R+ELQLK  GR
Sbjct:   24 PRDDAFQQ--LGAAFVTRLPAAPLPAPYVVGFSDDAARMLGLEPALRDAPGFAELFCGNPTRDWPQASLPYASVYSGHQFGVWAGQLGDGRALTIGELAH-DGRRYELQLKGAGR 135          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y2140_BURTA (UPF0061 protein BTH_I2140 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=BTH_I2140 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.110e-15
Identity = 52/123 (42.28%), Postives = 67/123 (54.47%), Query Frame = 2
Query:  323 LPGDPRTDSIPRE----VLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL---AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            LP    T + PR+     L A +    P+A +  P +V +S+  A  L LDP   + P F   F G         ++PYA  Y GHQFG+WAGQLGDGRA+T+GE L     R+ELQLK  GR
Sbjct:   14 LPDLAATLAAPRDGAFLQLGAAFLTRQPAAPLPAPYVVGFSDDAARMLGLDPALRDAPGFAGLFCGNPTRDWPQASLPYASVYSGHQFGVWAGQLGDGRALTIGE-LEHDGRRYELQLKGAGR 135          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y1877_BURM1 (UPF0061 protein Bmul_1366/BMULJ_01877 OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=Bmul_1366 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.110e-15
Identity = 45/96 (46.88%), Postives = 58/96 (60.42%), Query Frame = 2
Query:  392 PSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL---AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            P+A +  P +V +S+ VA  L L      +P F   F+G       A A+PYA  Y GHQFG+WAGQLGDGRA+T+GE+      R+ELQLK  GR
Sbjct:   41 PAAPLAAPYVVGFSDEVARLLGLPASLAAQPGFAELFAGNPTRDWPAEALPYASVYSGHQFGVWAGQLGDGRALTIGELPGTDGRRYELQLKGSGR 136          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y1422_BURPS (UPF0061 protein BPSL1422 OS=Burkholderia pseudomallei GN=BPSL1422 PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.110e-15
Identity = 48/115 (41.74%), Postives = 66/115 (57.39%), Query Frame = 2
Query:  335 PRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL---AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            PR D+  +  L A +    P+A +  P +V +S+  A  L L+P   + P F   F G         ++PYA  Y GHQFG+WAGQLGDGRA+T+GE+ +    R+ELQLK  GR
Sbjct:   24 PRDDAFQQ--LGAAFVTRLPAAPLPAPYVVGFSDDAARMLGLEPALRDAPGFAELFCGNPTRDWPQASLPYASVYSGHQFGVWAGQLGDGRALTIGELAH-DGRRYELQLKGAGR 135          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y1826_BURA4 (UPF0061 protein BamMC406_1826 OS=Burkholderia ambifaria (strain MC40-6) GN=BamMC406_1826 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.894e-15
Identity = 44/96 (45.83%), Postives = 58/96 (60.42%), Query Frame = 2
Query:  392 PSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL---AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            P+A +  P +V +S+ VA  L L      +P F   F+G       A A+PYA  Y GHQFG+WAGQLGDGRA+T+GE+      R+ELQ+K  GR
Sbjct:   41 PAAPLPAPYVVGFSDEVAQLLGLPASFAAQPGFAELFAGNPTRDWPAHALPYASVYSGHQFGVWAGQLGDGRALTIGELPGTDGRRYELQIKGGGR 136          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y1192_THISH (UPF0061 protein Tgr7_1192 OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=Tgr7_1192 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.894e-15
Identity = 51/128 (39.84%), Postives = 68/128 (53.12%), Query Frame = 2
Query:  284 LEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            LEDL + +S+ R LP              A + +  P A    P  VA++E  A  + L P+E  R +F   F+G  PL G  P +  Y GHQFG++  QLGDGRA+ LGE+   +  RWELQLK  G
Sbjct:    4 LEDLKFINSYAR-LP-------------EAFHDRPMP-APFPQPYRVAFNEKAAALIGLHPEEASRAEFVNAFTGQIPLTGMEPVSMIYAGHQFGVYVPQLGDGRALVLGEVQTPEGARWELQLKGSG 116          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y2958_NITHX (UPF0061 protein Nham_2958 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=Nham_2958 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.474e-15
Identity = 45/111 (40.54%), Postives = 66/111 (59.46%), Query Frame = 2
Query:  338 RTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            R D+    +  A Y +V P A    P+L+  ++++A  L +DP+  E P+     SG     G+ P AQ Y GHQFG +  QLGDGRAI LGE++++  +R++LQLK  GR
Sbjct:   20 RFDNTYARLPEAFYQRVEP-ATAAAPRLLRVNDALARQLRIDPQFLESPEGVAVLSGNVIAPGSEPIAQAYAGHQFGDFVPQLGDGRAILLGEVVDVAGKRYDLQLKGSGR 129          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y3881_PSEU5 (UPF0061 protein PST_3881 OS=Pseudomonas stutzeri (strain A1501) GN=PST_3881 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.231e-15
Identity = 53/132 (40.15%), Postives = 71/132 (53.79%), Query Frame = 2
Query:  275 LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            +K L  L++D+ F R   GD  +            T+VSP   +E P+LV  SE+    L+LDP E E+  F   FSG    + A P A  Y GHQFG +  QLGDGR + LGE++N   E W+L LK  G+
Sbjct:    1 MKTLTQLHFDNRFARL--GDTFS------------TQVSPQP-LEAPRLVVASEAAMALLDLDPAEAEQALFAELFSGHKIWSTAEPRAMVYSGHQFGSYNPQLGDGRGLLLGEVVNEAGEYWDLHLKGAGK 117          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y2107_BORBR (UPF0061 protein BB2107 OS=Bordetella bronchiseptica GN=BB2107 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.231e-15
Identity = 50/118 (42.37%), Postives = 64/118 (54.24%), Query Frame = 2
Query:  314 VRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            +++LP D    ++P E     YT++ P      P+L+  +   A  + LDP EF    F   FSG  PL G    A  Y GHQFG+WAGQLGDGRA  LGE+    +  WELQLK  G
Sbjct:    6 LQDLPTDNSFAALPAEF----YTRLQPRPPAA-PRLLHANAEAAALIGLDPAEFSTQAFLDVFSGHAPLPGGDTLAAVYSGHQFGVWAGQLGDGRAHLLGEVRG-PAGGWELQLKGAG 117          
The following BLAST results are available for this feature:
BLAST of FC931575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
Y2457_BURP11.110e-1541.74UPF0061 protein BURPS1710b_2457 OS=Burkholderia ps... [more]
Y2336_BURP01.110e-1541.74UPF0061 protein BURPS1106A_2336 OS=Burkholderia ps... [more]
Y2140_BURTA1.110e-1542.28UPF0061 protein BTH_I2140 OS=Burkholderia thailand... [more]
Y1877_BURM11.110e-1546.88UPF0061 protein Bmul_1366/BMULJ_01877 OS=Burkholde... [more]
Y1422_BURPS1.110e-1541.74UPF0061 protein BPSL1422 OS=Burkholderia pseudomal... [more]
Y1826_BURA41.894e-1545.83UPF0061 protein BamMC406_1826 OS=Burkholderia ambi... [more]
Y1192_THISH1.894e-1539.84UPF0061 protein Tgr7_1192 OS=Thioalkalivibrio sp. ... [more]
Y2958_NITHX2.474e-1540.54UPF0061 protein Nham_2958 OS=Nitrobacter hamburgen... [more]
Y3881_PSEU53.231e-1540.15UPF0061 protein PST_3881 OS=Pseudomonas stutzeri (... [more]
Y2107_BORBR3.231e-1542.37UPF0061 protein BB2107 OS=Bordetella bronchiseptic... [more]

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Properties
Property NameValue
Genbank descriptionC34106F07EF PostHarvP1 Citrus clementina cDNA clone C34106F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931575 ID=FC931575; Name=FC931575; organism=Citrus clementina; type=EST; length=691bp
CTCAACTAAACCACACCTCCTCTTCTCTTCACTCTCTTCTTCTTCTTCTT
CTCTCCGCCCTCGCCTCCCCAAATTCCCGTTCTACCCCGCCTACTTTACA
AAGTCTCCATCCTGTCCTTCCATCGCATGCCACGTCAGCACGACAGGCGG
CGGCGGTGCTGCGCAGATGGAGTCGAGTGCGTCTGTCGATTCGGTGACGC
ATGATTTGAAGAATCAGAGATTGGATACGGAAACGGAAACGGACGGCGGA
GATGAGAGCAAGATGACGAAGAAGCTGAAAGCTCTTGAGGATCTGAATTG
GGACCACTCGTTTGTTCGAGAGTTGCCTGGTGATCCCAGGACTGATTCTA
TCCCTCGTGAGGTATTGCATGCCTGTTATACTAAAGTTTCTCCGTCAGCT
GAAGTAGAAAATCCTCAGCTTGTTGCGTGGTCAGAATCAGTGGCCGATTC
TCTTGAGTTGGATCCTAAAGAATTTGAAAGACCAGATTTTCCCCTCTTTT
TTTCTGGGGCTACTCCTTTGGCGGGAGCGGTGCCATATGCTCAATGCTAC
GGTGGACATCAATTTGGCATGTGGGCTGGTCAGCTGGGTGATGGTCGGGC
AATAACTCTTGGCGAGATCCTGAATTTGAAGTCGGAAAGGTGGGAATTGC
AGCTTAAGGAGCTGGGAAGACTCCATATAGCCGCTTTGCTG
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