FC931575

Overview
NameFC931575
Unique NameFC931575
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y1919_BORPA (UPF0061 protein BPP1919 OS=Bordetella parapertussis GN=BPP1919 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.231e-15
Identity = 50/118 (42.37%), Postives = 64/118 (54.24%), Query Frame = 2
Query:  314 VRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            +++LP D    ++P E     YT++ P      P+L+  +   A  + LDP EF    F   FSG  PL G    A  Y GHQFG+WAGQLGDGRA  LGE+    +  WELQLK  G
Sbjct:    6 LQDLPTDNSFAALPAEF----YTRLQPRPPAA-PRLLHANAEAAALIGLDPAEFSTQAFLDVFSGHAPLPGGDTLAAVYSGHQFGVWAGQLGDGRAHLLGEVRG-PAGGWELQLKGAG 117          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y1840_BURVG (UPF0061 protein Bcep1808_1840 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=Bcep1808_1840 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.231e-15
Identity = 45/96 (46.88%), Postives = 56/96 (58.33%), Query Frame = 2
Query:  392 PSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL---AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            P+A +  P +V +S  VA  L L P       F   F+G       A A+PYA  Y GHQFG+WAGQLGDGRA+T+GE+      R+ELQLK  GR
Sbjct:   41 PAAPLPAPYVVGFSAEVAQLLGLPPSLAAHAQFAELFAGNPTRDWPAHALPYASVYSGHQFGVWAGQLGDGRALTIGELPGSDGRRYELQLKGGGR 136          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y5028_PSESM (UPF0061 protein PSPTO_5028 OS=Pseudomonas syringae pv. tomato GN=PSPTO_5028 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.220e-15
Identity = 54/132 (40.91%), Postives = 70/132 (53.03%), Query Frame = 2
Query:  275 LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            +KAL++L +D+ F R   GD            A  T V P   ++ P+LV  SES    L+L P++ E P F   FSG    A A P A  Y GHQFG +  +LGDGR + LGE+ N   E W+L LK  GR
Sbjct:    1 MKALDELVFDNRFARL--GD------------AFSTHVLPEP-IDAPRLVVASESALALLDLAPEQSELPLFAEIFSGHKLWAEAEPRAMVYSGHQFGSYNPRLGDGRGLLLGEVYNDAGEHWDLHLKGAGR 117          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y1924_BURPP (UPF0061 protein Bphyt_1924 OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=Bphyt_1924 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.220e-15
Identity = 47/96 (48.96%), Postives = 58/96 (60.42%), Query Frame = 2
Query:  392 PSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL---AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            P+A +  P LV +S   A  L L+P     P F   FSG       A A+PYA  Y GHQFG+WAGQLGDGRA+ LGE+ +   +R+ELQLK  GR
Sbjct:   41 PAAPLSAPYLVGFSAETAALLGLEPGLENDPGFAELFSGNLTREWPAEALPYASVYSGHQFGVWAGQLGDGRALGLGEVEH-NGQRFELQLKGAGR 135          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y1896_BURCM (UPF0061 protein Bamb_1896 OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=Bamb_1896 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.220e-15
Identity = 44/96 (45.83%), Postives = 57/96 (59.38%), Query Frame = 2
Query:  392 PSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL---AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            P+A +  P +V  S+ VA  L L      +P F   F+G       A A+PYA  Y GHQFG+WAGQLGDGRA+T+GE+      R+ELQ+K  GR
Sbjct:   41 PAAPLPAPYVVGCSDEVAQLLGLPASFATQPGFAELFAGNPTRDWPAHALPYASVYSGHQFGVWAGQLGDGRALTIGELPGTDGRRYELQIKGGGR 136          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y1440_BURMA (UPF0061 protein BMA1440 OS=Burkholderia mallei GN=BMA1440 PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.220e-15
Identity = 45/105 (42.86%), Postives = 61/105 (58.10%), Query Frame = 2
Query:  365 LHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL---AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            L A +    P+A +  P +V +S+  A  L L+P   + P F   F G         ++PYA  Y GHQFG+WAGQLGDGRA+T+GE+ +    R+ELQLK  GR
Sbjct:   32 LGAAFVTRLPAAPLPAPYVVGFSDDAARMLGLEPALRDAPGFAELFCGNPTRDWPQASLPYASVYSGHQFGVWAGQLGDGRALTIGELAH-DGRRYELQLKGAGR 135          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y1019_THIDA (UPF0061 protein Tbd_1019 OS=Thiobacillus denitrificans (strain ATCC 25259) GN=Tbd_1019 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.220e-15
Identity = 52/132 (39.39%), Postives = 66/132 (50.00%), Query Frame = 2
Query:  275 LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            +  LE L +D+ F R LP                Y +V P+  V +P LV +S      L+LD  E +RP+     +G   L G    A  Y GHQFG +  QLGDGRAI LGE+ N   E WE+QLK  GR
Sbjct:    1 MATLESLTFDNGFAR-LP-------------ETYYARVCPTP-VPDPYLVCYSPEALSLLDLDATELKRPETIETLAGNRLLPGMDAIAALYAGHQFGHYVPQLGDGRAILLGEVRNRAGEGWEIQLKGAGR 117          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y558_PSEMY (UPF0061 protein Pmen_0558 OS=Pseudomonas mendocina (strain ymp) GN=Pmen_0558 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.511e-15
Identity = 50/132 (37.88%), Postives = 68/132 (51.52%), Query Frame = 2
Query:  275 LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            +K L+ L +D+ F R   GD            A  T+V P   +E P+LV  S      L+LDP E +R +F   F+G      A P A  Y GHQFG +  +LGDGR + LGE++N   E W+L LK  G+
Sbjct:    1 MKKLDQLTFDNRFARL--GD------------AFSTEVLPEP-IEQPRLVVASSDAMALLDLDPAEAQREEFAELFAGHKLWGEAEPRAMVYSGHQFGGYTPRLGDGRGLLLGEVVNAAGEHWDLHLKGAGQ 117          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y5068_PSEPK (UPF0061 protein PP_5068 OS=Pseudomonas putida (strain KT2440) GN=PP_5068 PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.511e-15
Identity = 53/132 (40.15%), Postives = 69/132 (52.27%), Query Frame = 2
Query:  275 LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            +KAL+ L +D+ F R   GD            A  T+V P   + +P+LV  SES    L+LDP + E P F   FSG      A P A  Y GHQFG +  +LGDGR + L E+LN   E W+L LK  G+
Sbjct:    1 MKALDQLTFDNRFARL--GD------------AFSTQVLPEP-IADPRLVVASESAMALLDLDPAQAELPVFAELFSGHKLWEEADPRAMVYSGHQFGSYNPRLGDGRGLLLAEVLNDAGEHWDLHLKGAGQ 117          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y4941_PSEP1 (UPF0061 protein Pput_4941 OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=Pput_4941 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.198e-15
Identity = 53/132 (40.15%), Postives = 69/132 (52.27%), Query Frame = 2
Query:  275 LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            +KAL+ L +D+ F R   GD            A  T+V P   + +P+LV  SES    L+LDP + E P F   FSG      A P A  Y GHQFG +  +LGDGR + L E+LN   E W+L LK  G+
Sbjct:    1 MKALDQLTFDNRFARL--GD------------AFSTQVLPEP-IADPRLVVASESAMALLDLDPAQAELPVFAELFSGHKLWEEADPRAMVYSGHQFGSYNPRLGDGRGLLLAEVLNDVGEHWDLHLKGAGQ 117          
The following BLAST results are available for this feature:
BLAST of FC931575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
Y1919_BORPA3.231e-1542.37UPF0061 protein BPP1919 OS=Bordetella parapertussi... [more]
Y1840_BURVG3.231e-1546.88UPF0061 protein Bcep1808_1840 OS=Burkholderia viet... [more]
Y5028_PSESM4.220e-1540.91UPF0061 protein PSPTO_5028 OS=Pseudomonas syringae... [more]
Y1924_BURPP4.220e-1548.96UPF0061 protein Bphyt_1924 OS=Burkholderia phytofi... [more]
Y1896_BURCM4.220e-1545.83UPF0061 protein Bamb_1896 OS=Burkholderia ambifari... [more]
Y1440_BURMA4.220e-1542.86UPF0061 protein BMA1440 OS=Burkholderia mallei GN=... [more]
Y1019_THIDA4.220e-1539.39UPF0061 protein Tbd_1019 OS=Thiobacillus denitrifi... [more]
Y558_PSEMY5.511e-1537.88UPF0061 protein Pmen_0558 OS=Pseudomonas mendocina... [more]
Y5068_PSEPK5.511e-1540.15UPF0061 protein PP_5068 OS=Pseudomonas putida (str... [more]
Y4941_PSEP17.198e-1540.15UPF0061 protein Pput_4941 OS=Pseudomonas putida (s... [more]

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Properties
Property NameValue
Genbank descriptionC34106F07EF PostHarvP1 Citrus clementina cDNA clone C34106F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931575 ID=FC931575; Name=FC931575; organism=Citrus clementina; type=EST; length=691bp
CTCAACTAAACCACACCTCCTCTTCTCTTCACTCTCTTCTTCTTCTTCTT
CTCTCCGCCCTCGCCTCCCCAAATTCCCGTTCTACCCCGCCTACTTTACA
AAGTCTCCATCCTGTCCTTCCATCGCATGCCACGTCAGCACGACAGGCGG
CGGCGGTGCTGCGCAGATGGAGTCGAGTGCGTCTGTCGATTCGGTGACGC
ATGATTTGAAGAATCAGAGATTGGATACGGAAACGGAAACGGACGGCGGA
GATGAGAGCAAGATGACGAAGAAGCTGAAAGCTCTTGAGGATCTGAATTG
GGACCACTCGTTTGTTCGAGAGTTGCCTGGTGATCCCAGGACTGATTCTA
TCCCTCGTGAGGTATTGCATGCCTGTTATACTAAAGTTTCTCCGTCAGCT
GAAGTAGAAAATCCTCAGCTTGTTGCGTGGTCAGAATCAGTGGCCGATTC
TCTTGAGTTGGATCCTAAAGAATTTGAAAGACCAGATTTTCCCCTCTTTT
TTTCTGGGGCTACTCCTTTGGCGGGAGCGGTGCCATATGCTCAATGCTAC
GGTGGACATCAATTTGGCATGTGGGCTGGTCAGCTGGGTGATGGTCGGGC
AATAACTCTTGGCGAGATCCTGAATTTGAAGTCGGAAAGGTGGGAATTGC
AGCTTAAGGAGCTGGGAAGACTCCATATAGCCGCTTTGCTG
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