FC931575

Overview
NameFC931575
Unique NameFC931575
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y5118_PSEPG (UPF0061 protein PputGB1_5118 OS=Pseudomonas putida (strain GB-1) GN=PputGB1_5118 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.400e-15
Identity = 54/132 (40.91%), Postives = 68/132 (51.52%), Query Frame = 2
Query:  275 LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            +KAL+ L++D+ F R   GD            A  T+V P    E P+LV  SES    L+LDP   E P F   FSG      A P A  Y GHQFG +  +LGDGR + L E+LN   E W+L LK  G+
Sbjct:    1 MKALDQLSFDNRFARL--GD------------AFSTQVLPEPIAE-PRLVVASESAMALLDLDPAHAELPVFAELFSGHKLWEEADPRAMVYSGHQFGSYNPRLGDGRGLLLAEVLNDAGEHWDLHLKGAGQ 117          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y494_PSEU2 (UPF0061 protein Psyr_0494 OS=Pseudomonas syringae pv. syringae (strain B728a) GN=Psyr_0494 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.400e-15
Identity = 51/132 (38.64%), Postives = 70/132 (53.03%), Query Frame = 2
Query:  275 LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            +KAL++L +D+ F R   GD  + S+  E + A             PQLV  S+S    L+L P++ + P F   FSG    + A P A  Y GHQFG +  +LGDGR + LGE+ N   E W+L LK  GR
Sbjct:    1 MKALDELIFDNRFARL--GDAFSTSVLPEPIDA-------------PQLVVASQSALALLDLAPEQADLPLFAEIFSGHKLWSEAEPRAMVYSGHQFGSYNPRLGDGRGLLLGEVYNDAGEHWDLHLKGAGR 117          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y4038_DECAR (UPF0061 protein Daro_4038 OS=Dechloromonas aromatica (strain RCB) GN=Daro_4038 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.400e-15
Identity = 47/100 (47.00%), Postives = 56/100 (56.00%), Query Frame = 2
Query:  371 ACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            A YT++ P    E P +V  S  VAD L L  +    P F   F+G   L G+ P A  Y GHQFG+WAGQLGDGRA  LG + N     WE+QLK  GR
Sbjct:   24 AFYTRLEPHPLPE-PYVVGVSTEVADLLGLPAELMNSPQFAEIFAGNRLLPGSEPLAAVYSGHQFGVWAGQLGDGRAHLLGGLRN-DQGHWEIQLKGAGR 121          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y398_PSEPW (UPF0061 protein PputW619_0398 OS=Pseudomonas putida (strain W619) GN=PputW619_0398 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.400e-15
Identity = 51/132 (38.64%), Postives = 70/132 (53.03%), Query Frame = 2
Query:  275 LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            +KAL+ L +D+ F R   GD            A  T+V P   + +P+LV  S+S    L+LDP + + P F   FSG     GA P A  Y GHQFG +  +LGDGR + L E++N   E W+L LK  G+
Sbjct:    1 MKALDQLTFDNRFARL--GD------------AFSTQVLPEP-IADPRLVIASKSAMALLDLDPAQADTPVFAELFSGHKLWEGADPRAMVYSGHQFGSYNPRLGDGRGLLLAEVVNDAGEHWDLHLKGAGQ 117          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y4511_AZOVD (UPF0061 protein Avin_45110 OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=Avin_45110 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.228e-14
Identity = 48/132 (36.36%), Postives = 69/132 (52.27%), Query Frame = 2
Query:  275 LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            +K L +L +D+ F R   GD  +            T V+P   + +P+LV  S +    L+L+P   + P    + +G  P  GA P A  Y GHQFG +  QLGDGR + LGE++N   ERW+L LK  G+
Sbjct:    1 MKRLSELAFDNRFARL--GDTFS------------TAVTP-LPIASPRLVVASPAALALLDLEPAVADDPQLVEYCAGQCPWPGAEPRAMAYSGHQFGFYNPQLGDGRGLLLGEVINAAGERWDLHLKGAGK 117          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y444_PSEPF (UPF0061 protein Pfl01_0444 OS=Pseudomonas fluorescens (strain Pf0-1) GN=Pfl01_0444 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.228e-14
Identity = 48/132 (36.36%), Postives = 66/132 (50.00%), Query Frame = 2
Query:  275 LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            +KAL++L +D+ F R        D+    VL            ++NP+LV  S +    L+LDP   +  +F   F G    A A P A  Y GHQFG +  QLGDGR + LGE+ N   E W+L LK  G+
Sbjct:    1 MKALDELTFDNRFAR------LGDAFSAHVL---------PEPIDNPRLVVASPAALALLDLDPAMADTQEFAELFGGHKLWADAEPRAMVYSGHQFGGYTPQLGDGRGLLLGEVYNAAGEHWDLHLKGAGQ 117          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y485_PSE14 (UPF0061 protein PSPPH_0485 OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=PSPPH_0485 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.094e-14
Identity = 50/132 (37.88%), Postives = 69/132 (52.27%), Query Frame = 2
Query:  275 LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            +KAL++L +D+ F R   GD  + S+  E              +E P+LV  S+S    L+L P++ + P F   FSG    + A P A  Y GHQFG +  +LGDGR + LGE  N   E W+L LK  GR
Sbjct:    1 MKALDELIFDNRFARL--GDAFSTSVLSE-------------PIETPRLVVASQSALALLDLAPEQADLPLFAEIFSGHKLWSEAEPRAMVYSGHQFGSYNPRLGDGRGLLLGEAYNDAGEHWDLHLKGAGR 117          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y444_PSEFS (UPF0061 protein PFLU_0444 OS=Pseudomonas fluorescens (strain SBW25) GN=PFLU_0444 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.094e-14
Identity = 51/131 (38.93%), Postives = 65/131 (49.62%), Query Frame = 2
Query:  275 LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            +KAL++L +D+ F R   GD  +  +  E L A             P+LV  S +    L+LDP   E P F   F G    A A P A  Y GHQFG +  QLGDGR + LGE+ N   E W+L LK  G
Sbjct:    1 MKALDELTFDNRFARL--GDAFSTHVLPEPLDA-------------PRLVVASPAAMALLDLDPSVAETPVFAELFGGHKLWAEAEPRAMVYSGHQFGGYTPQLGDGRGLLLGEVYNEAGEHWDLHLKGAG 116          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y2155_BURXL (UPF0061 protein Bxeno_A2155 OS=Burkholderia xenovorans (strain LB400) GN=Bxeno_A2155 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.735e-14
Identity = 46/96 (47.92%), Postives = 57/96 (59.38%), Query Frame = 2
Query:  392 PSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL---AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            P+A +  P +V +S   A  L L+P     P F   FSG       A A+PYA  Y GHQFG+WAGQLGDGRA+ LGE+ +    R+ELQLK  GR
Sbjct:   41 PAAPLSAPYVVGFSAETAALLGLEPGIENDPAFAELFSGNATREWPAEALPYASVYSGHQFGVWAGQLGDGRALGLGEVEH-GGRRFELQLKGAGR 135          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y945_NITWN (UPF0061 protein Nwi_0945 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=Nwi_0945 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.572e-14
Identity = 42/100 (42.00%), Postives = 61/100 (61.00%), Query Frame = 2
Query:  371 ACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            A Y +V P+A V  P+L+  ++++A  L +DP   + P      SG     G+ P AQ Y GHQFG +  QLGDGRAI LGE+++   +R+++QLK  GR
Sbjct:   31 AFYERVKPAA-VAAPRLLRVNDALARQLRIDPAFLKSPQGVAVLSGNEIAPGSDPIAQAYAGHQFGSFVPQLGDGRAILLGEVVDAAGKRFDIQLKGSGR 129          
The following BLAST results are available for this feature:
BLAST of FC931575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
Y5118_PSEPG9.400e-1540.91UPF0061 protein PputGB1_5118 OS=Pseudomonas putida... [more]
Y494_PSEU29.400e-1538.64UPF0061 protein Psyr_0494 OS=Pseudomonas syringae ... [more]
Y4038_DECAR9.400e-1547.00UPF0061 protein Daro_4038 OS=Dechloromonas aromati... [more]
Y398_PSEPW9.400e-1538.64UPF0061 protein PputW619_0398 OS=Pseudomonas putid... [more]
Y4511_AZOVD1.228e-1436.36UPF0061 protein Avin_45110 OS=Azotobacter vineland... [more]
Y444_PSEPF1.228e-1436.36UPF0061 protein Pfl01_0444 OS=Pseudomonas fluoresc... [more]
Y485_PSE142.094e-1437.88UPF0061 protein PSPPH_0485 OS=Pseudomonas syringae... [more]
Y444_PSEFS2.094e-1438.93UPF0061 protein PFLU_0444 OS=Pseudomonas fluoresce... [more]
Y2155_BURXL2.735e-1447.92UPF0061 protein Bxeno_A2155 OS=Burkholderia xenovo... [more]
Y945_NITWN3.572e-1442.00UPF0061 protein Nwi_0945 OS=Nitrobacter winogradsk... [more]

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Properties
Property NameValue
Genbank descriptionC34106F07EF PostHarvP1 Citrus clementina cDNA clone C34106F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931575 ID=FC931575; Name=FC931575; organism=Citrus clementina; type=EST; length=691bp
CTCAACTAAACCACACCTCCTCTTCTCTTCACTCTCTTCTTCTTCTTCTT
CTCTCCGCCCTCGCCTCCCCAAATTCCCGTTCTACCCCGCCTACTTTACA
AAGTCTCCATCCTGTCCTTCCATCGCATGCCACGTCAGCACGACAGGCGG
CGGCGGTGCTGCGCAGATGGAGTCGAGTGCGTCTGTCGATTCGGTGACGC
ATGATTTGAAGAATCAGAGATTGGATACGGAAACGGAAACGGACGGCGGA
GATGAGAGCAAGATGACGAAGAAGCTGAAAGCTCTTGAGGATCTGAATTG
GGACCACTCGTTTGTTCGAGAGTTGCCTGGTGATCCCAGGACTGATTCTA
TCCCTCGTGAGGTATTGCATGCCTGTTATACTAAAGTTTCTCCGTCAGCT
GAAGTAGAAAATCCTCAGCTTGTTGCGTGGTCAGAATCAGTGGCCGATTC
TCTTGAGTTGGATCCTAAAGAATTTGAAAGACCAGATTTTCCCCTCTTTT
TTTCTGGGGCTACTCCTTTGGCGGGAGCGGTGCCATATGCTCAATGCTAC
GGTGGACATCAATTTGGCATGTGGGCTGGTCAGCTGGGTGATGGTCGGGC
AATAACTCTTGGCGAGATCCTGAATTTGAAGTCGGAAAGGTGGGAATTGC
AGCTTAAGGAGCTGGGAAGACTCCATATAGCCGCTTTGCTG
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