FC931575

Overview
NameFC931575
Unique NameFC931575
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y863_MYXXD (UPF0061 protein MXAN_0863 OS=Myxococcus xanthus (strain DK 1622) GN=MXAN_0863 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.572e-14
Identity = 45/128 (35.16%), Postives = 69/128 (53.91%), Query Frame = 2
Query:  275 LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLK 658
            +  LE L +D+++ R LP                  +V PS    + +LV+ + +    L+L P+E +RP+F     GA PL G  P+A  Y GHQFG++  +LGDGRA+ LGE+ +    +W+L LK
Sbjct:    1 MATLEQLRFDNTYAR-LPA-------------GFGARVHPSP-FPDAKLVSVNPAALKLLDLTPEEAQRPEFVAAMGGAKPLPGMEPFAMVYAGHQFGVYVPRLGDGRALLLGEVRDAAGAKWDLHLK 113          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y369_PSEE4 (UPF0061 protein PSEEN0369 OS=Pseudomonas entomophila (strain L48) GN=PSEEN0369 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.093e-14
Identity = 50/132 (37.88%), Postives = 70/132 (53.03%), Query Frame = 2
Query:  275 LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            +K+L+ L +D+ F R   GD            A  T+V P   + +P+LV  SE+    L+LDP + + P F   FSG      A P A  Y GHQFG +  +LGDGR + LGE++N   E W+L LK  G+
Sbjct:    1 MKSLDQLVFDNRFARL--GD------------AFSTQVLPDP-IADPRLVVASEAAMALLDLDPAQADLPVFAELFSGHKLWEEADPRAMVYSGHQFGSYNPRLGDGRGLLLGEVVNDAGEHWDLHLKGAGQ 117          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y997_CLOPH (UPF0061 protein Cphy_0997 OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=Cphy_0997 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.958e-14
Identity = 43/98 (43.88%), Postives = 59/98 (60.20%), Query Frame = 2
Query:  377 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            YT+  PS +V +P+LV W+ ++A  L LD   F+  +  L  SG   L    P A+ Y GHQFG +   LGDGRA+ LGEI+    ER+++QLK  GR
Sbjct:   19 YTEQLPS-KVPSPKLVKWNSTLAKELGLDSDFFQSEEGALVLSGNQILEDTTPIAEAYAGHQFGYFT-MLGDGRAVLLGEIVTNDEERYDIQLKGSGR 114          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y5402_METPB (UPF0061 protein Mpop_5402 OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=Mpop_5402 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13
Identity = 43/97 (44.33%), Postives = 57/97 (58.76%), Query Frame = 2
Query:  377 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            + +V+P+A VE P+LV  + ++A  L LDP   E P+     SG     GA P A  Y GHQFG +  QLGDGRAI LGE++     R ++QLK  G
Sbjct:   19 FARVAPTA-VEAPRLVRLNRTLALDLGLDPDRLESPEGLDVLSGRRVAEGAEPLAAAYAGHQFGQFVPQLGDGRAILLGEVVGRDGRRRDIQLKGSG 114          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y3021_DESPS (UPF0061 protein DP3021 OS=Desulfotalea psychrophila GN=DP3021 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.315e-13
Identity = 45/125 (36.00%), Postives = 67/125 (53.60%), Query Frame = 2
Query:  293 LNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            +N+ +S+ R+L  D   +S+P  VL               P+L+ W+  +A+ L + P+E  +      FSG   L G+ P A  Y GHQFG +  QLGDGRA  LGE+ +   +RW++QLK  G
Sbjct:    2 MNFSNSY-RQLGSDFYEESLPTPVLA--------------PRLLLWNAPLAEQLMI-PEELGQAALAQIFSGNQLLPGSEPIAMAYAGHQFGSFVPQLGDGRAHLLGEVFDKSGQRWDIQLKGSG 110          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y5760_PSEA7 (UPF0061 protein PSPA7_5760 OS=Pseudomonas aeruginosa (strain PA7) GN=PSPA7_5760 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.024e-13
Identity = 49/132 (37.12%), Postives = 68/132 (51.52%), Query Frame = 2
Query:  275 LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            +K+L+DL++D+ F R        D+   EVL        P AE   P+LV  S +    L+L  +  + P F   F G    + A P A  Y GHQFG +  +LGDGR + LGE+LN   E W+L LK  G+
Sbjct:    1 MKSLDDLDFDNRFAR------LGDAFSTEVLP------DPIAE---PRLVVASPAALALLDLPAEASDEPVFAELFGGHKLWSEAEPRAMVYSGHQFGSYNPRLGDGRGLLLGEVLNQAGEHWDLHLKGAGQ 117          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y3040_BORPD (UPF0061 protein Bpet3040 OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=Bpet3040 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.024e-13
Identity = 43/99 (43.43%), Postives = 54/99 (54.55%), Query Frame = 2
Query:  371 ACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            A YT+++P   +  P+L+  +E  A  + L        +F   FSG  PL G    A  Y GHQFG+WAGQLGDGRA  LGE+       WELQLK  G
Sbjct:   21 AFYTRLAPQP-LTAPRLLHANEQAAALIGLSADALRSDEFLRVFSGQQPLPGGQTLAAVYSGHQFGVWAGQLGDGRAHLLGEVAG-PDGNWELQLKGAG 117          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y1414_CLOBB (UPF0061 protein CLL_A1414 OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=CLL_A1414 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.024e-13
Identity = 42/98 (42.86%), Postives = 62/98 (63.27%), Query Frame = 2
Query:  377 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            +++ +PS EV++ +L  ++ES+A  L L  +  +  D   FF+G   L G VP AQ Y GHQFG +   LGDGRAI +GE+ +   ER+++QLK  GR
Sbjct:   26 FSEQNPS-EVKSAKLEVFNESLASDLGLSEEFLQSDDGVAFFAGNKILEGTVPIAQAYAGHQFGHFT-MLGDGRAILIGELKSQNGERFDIQLKGAGR 121          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y965_RHOS4 (UPF0061 protein RHOS4_09650 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=RHOS4_09650 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.950e-13
Identity = 43/93 (46.24%), Postives = 56/93 (60.22%), Query Frame = 2
Query:  392 PSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            P+A V  P+L+  +  +A+ L LDP   ER    +F SG     GA P AQ Y GHQFG ++ QLGDGRA+ +GEI +    R +LQLK  GR
Sbjct:   21 PAAPVPAPRLLRLNRPLAEELGLDPDLLEREGAEIF-SGRRLPEGAHPLAQAYAGHQFGGFSPQLGDGRALLIGEITDRAGRRRDLQLKGSGR 112          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y687_RHOSK (UPF0061 protein RSKD131_0687 OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=RSKD131_0687 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.950e-13
Identity = 43/93 (46.24%), Postives = 56/93 (60.22%), Query Frame = 2
Query:  392 PSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            P+A V  P+L+  +  +A+ L LDP   ER    +F SG     GA P AQ Y GHQFG ++ QLGDGRA+ +GEI +    R +LQLK  GR
Sbjct:   21 PAAPVPAPRLLRLNRPLAEELGLDPDLLEREGAEIF-SGRRLPEGAHPLAQAYAGHQFGGFSPQLGDGRALLIGEITDRAGRRRDLQLKGSGR 112          
The following BLAST results are available for this feature:
BLAST of FC931575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
Y863_MYXXD3.572e-1435.16UPF0061 protein MXAN_0863 OS=Myxococcus xanthus (s... [more]
Y369_PSEE46.093e-1437.88UPF0061 protein PSEEN0369 OS=Pseudomonas entomophi... [more]
Y997_CLOPH7.958e-1443.88UPF0061 protein Cphy_0997 OS=Clostridium phytoferm... [more]
Y5402_METPB1.039e-1344.33UPF0061 protein Mpop_5402 OS=Methylobacterium popu... [more]
Y3021_DESPS2.315e-1336.00UPF0061 protein DP3021 OS=Desulfotalea psychrophil... [more]
Y5760_PSEA73.024e-1337.12UPF0061 protein PSPA7_5760 OS=Pseudomonas aerugino... [more]
Y3040_BORPD3.024e-1343.43UPF0061 protein Bpet3040 OS=Bordetella petrii (str... [more]
Y1414_CLOBB3.024e-1342.86UPF0061 protein CLL_A1414 OS=Clostridium botulinum... [more]
Y965_RHOS43.950e-1346.24UPF0061 protein RHOS4_09650 OS=Rhodobacter sphaero... [more]
Y687_RHOSK3.950e-1346.24UPF0061 protein RSKD131_0687 OS=Rhodobacter sphaer... [more]

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Properties
Property NameValue
Genbank descriptionC34106F07EF PostHarvP1 Citrus clementina cDNA clone C34106F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931575 ID=FC931575; Name=FC931575; organism=Citrus clementina; type=EST; length=691bp
CTCAACTAAACCACACCTCCTCTTCTCTTCACTCTCTTCTTCTTCTTCTT
CTCTCCGCCCTCGCCTCCCCAAATTCCCGTTCTACCCCGCCTACTTTACA
AAGTCTCCATCCTGTCCTTCCATCGCATGCCACGTCAGCACGACAGGCGG
CGGCGGTGCTGCGCAGATGGAGTCGAGTGCGTCTGTCGATTCGGTGACGC
ATGATTTGAAGAATCAGAGATTGGATACGGAAACGGAAACGGACGGCGGA
GATGAGAGCAAGATGACGAAGAAGCTGAAAGCTCTTGAGGATCTGAATTG
GGACCACTCGTTTGTTCGAGAGTTGCCTGGTGATCCCAGGACTGATTCTA
TCCCTCGTGAGGTATTGCATGCCTGTTATACTAAAGTTTCTCCGTCAGCT
GAAGTAGAAAATCCTCAGCTTGTTGCGTGGTCAGAATCAGTGGCCGATTC
TCTTGAGTTGGATCCTAAAGAATTTGAAAGACCAGATTTTCCCCTCTTTT
TTTCTGGGGCTACTCCTTTGGCGGGAGCGGTGCCATATGCTCAATGCTAC
GGTGGACATCAATTTGGCATGTGGGCTGGTCAGCTGGGTGATGGTCGGGC
AATAACTCTTGGCGAGATCCTGAATTTGAAGTCGGAAAGGTGGGAATTGC
AGCTTAAGGAGCTGGGAAGACTCCATATAGCCGCTTTGCTG
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