FC931575

Overview
NameFC931575
Unique NameFC931575
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y3358_BRASO (UPF0061 protein BRADO3358 OS=Bradyrhizobium sp. (strain ORS278) GN=BRADO3358 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.950e-13
Identity = 39/97 (40.21%), Postives = 58/97 (59.79%), Query Frame = 2
Query:  377 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            + +V+P+  V  P+L+  +  +A+ L L+P E E P+     +G T   GA P A  Y GHQFG +  QLGDGRA+ LGE+++    R ++QLK  G
Sbjct:   19 FARVAPTP-VAAPRLIKLNRPLAEELGLNPAELETPEGAEILAGKTVPEGAEPIAMAYAGHQFGHFVPQLGDGRAVLLGEVVDRNGVRRDIQLKGSG 114          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y3136_ROSDO (UPF0061 protein RD1_3136 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=RD1_3136 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.950e-13
Identity = 41/97 (42.27%), Postives = 59/97 (60.82%), Query Frame = 2
Query:  377 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            YT++ P+  V +P L+A++E + D L +   +    +    FSGA    GA P AQ Y GHQFG +  QLGDGRAI LGE++    +R+++QLK  G
Sbjct:   19 YTRLKPTP-VRDPSLIAYNEPLGDILGISAAD--AAERAAVFSGAKLPEGAAPLAQLYAGHQFGNFNPQLGDGRAILLGEVIGTDGKRYDVQLKGSG 112          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y1035_RHOS1 (UPF0061 protein Rsph17029_1035 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=Rsph17029_1035 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.950e-13
Identity = 43/93 (46.24%), Postives = 56/93 (60.22%), Query Frame = 2
Query:  392 PSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            P+A V  P+L+  +  +A+ L LDP   ER    +F SG     GA P AQ Y GHQFG ++ QLGDGRA+ +GEI +    R +LQLK  GR
Sbjct:   21 PAAPVPAPRLLRLNRPLAEELGLDPDLLEREGAEIF-SGRRLPEGAHPLAQAYAGHQFGGFSPQLGDGRALLIGEITDRAGRRRDLQLKGSGR 112          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y945_AGRT5 (UPF0061 protein Atu0945 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=Atu0945 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.799e-13
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = 2
Query:  404 VENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            V+ P+L+A++ ++A+ L LD  + +       FSG     GA P A  Y GHQFG +  QLGDGRAI LGE++++   R ++QLK  G
Sbjct:   24 VKAPRLIAFNRTLAEELLLDVADLDDDRLAAIFSGNVVPQGAEPLAMAYAGHQFGGFVPQLGDGRAILLGEVIDVNGRRRDIQLKGSG 111          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y4238_COLP3 (UPF0061 protein CPS_4238 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=CPS_4238 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.799e-13
Identity = 39/104 (37.50%), Postives = 61/104 (58.65%), Query Frame = 2
Query:  359 EVLHACYTKVSPSAEVENPQLVAWSESVADSLELD-PKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            + L   +++ +  A V  P L+ W+E +A +L +   K+ +      +FSG   + G+ P AQ Y GHQFG +  QLGDGRA  LG+I + + +RW++QLK  G
Sbjct:   10 QALGESFSQQTLPAPVGQPSLLLWNEPLAKALTIPFTKDNDAELLSQYFSGNQLIEGSKPVAQAYSGHQFGHFNPQLGDGRAHLLGDIADTQGQRWDIQLKGSG 113          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y2020_PHOPR (UPF0061 protein PBPRA2020 OS=Photobacterium profundum GN=PBPRA2020 PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.149e-12
Identity = 38/89 (42.70%), Postives = 53/89 (59.55%), Query Frame = 2
Query:  404 VENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            + +P LV+ +  VA+ LELDP E +   F   F+G   LAG  P A  Y GHQFG +   LGDGR + LGE+L   + +W++ LK  G+
Sbjct:   29 LSDPFLVSVNPQVAEMLELDPLEAKTRLFINSFTGNKELAGTAPLAMKYTGHQFGHYNPDLGDGRGLLLGEVLTSTNAKWDIHLKGSGK 117          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: YDIU_SALTY (UPF0061 protein ydiU OS=Salmonella typhimurium GN=ydiU PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.501e-12
Identity = 41/104 (39.42%), Postives = 58/104 (55.77%), Query Frame = 2
Query:  356 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            R+ L A YT + P+  ++N +L+ +++ +A  L +    F+  +    + G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LK  G
Sbjct:   10 RDELPATYTALLPTP-LKNARLIWYNDELAQQLAIPASLFDATNGAGVWGGETLLPGMSPVAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGSTLDWHLKGAG 112          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: YDIU_SALTI (UPF0061 protein ydiU OS=Salmonella typhi GN=ydiU PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.501e-12
Identity = 41/104 (39.42%), Postives = 58/104 (55.77%), Query Frame = 2
Query:  356 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            R+ L A YT + P+  ++N +L+ +++ +A  L +    F+  +    + G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LK  G
Sbjct:   10 RDELPATYTALLPTP-LKNARLIWYNDELAQQLAIPASLFDATNGAGVWGGETLLPGMSPVAQVYSGHQFGIWAGQLGDGRGILLGEQLLADGSTLDWHLKGAG 112          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: YDIU_SALPK (UPF0061 protein ydiU OS=Salmonella paratyphi A (strain AKU_12601) GN=ydiU PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.501e-12
Identity = 41/104 (39.42%), Postives = 58/104 (55.77%), Query Frame = 2
Query:  356 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            R+ L A YT + P+  ++N +L+ +++ +A  L +    F+  +    + G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LK  G
Sbjct:   10 RDELPATYTALLPTP-LKNARLIWYNDELAQQLAIPASLFDATNGAGVWGGETLLPGMSPVAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGSTLDWHLKGAG 112          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: YDIU_SALPB (UPF0061 protein ydiU OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=ydiU PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.501e-12
Identity = 41/104 (39.42%), Postives = 58/104 (55.77%), Query Frame = 2
Query:  356 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            R+ L A YT + P+  ++N +L+ +++ +A  L +    F+  +    + G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LK  G
Sbjct:   10 RDELPATYTALLPTP-LKNARLIWYNDKLAQQLAIPASLFDATNGAGVWGGETLLPGMSPVAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGSTLDWHLKGAG 112          
The following BLAST results are available for this feature:
BLAST of FC931575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
Y3358_BRASO3.950e-1340.21UPF0061 protein BRADO3358 OS=Bradyrhizobium sp. (s... [more]
Y3136_ROSDO3.950e-1342.27UPF0061 protein RD1_3136 OS=Roseobacter denitrific... [more]
Y1035_RHOS13.950e-1346.24UPF0061 protein Rsph17029_1035 OS=Rhodobacter spha... [more]
Y945_AGRT58.799e-1342.05UPF0061 protein Atu0945 OS=Agrobacterium tumefacie... [more]
Y4238_COLP38.799e-1337.50UPF0061 protein CPS_4238 OS=Colwellia psychrerythr... [more]
Y2020_PHOPR1.149e-1242.70UPF0061 protein PBPRA2020 OS=Photobacterium profun... [more]
YDIU_SALTY1.501e-1239.42UPF0061 protein ydiU OS=Salmonella typhimurium GN=... [more]
YDIU_SALTI1.501e-1239.42UPF0061 protein ydiU OS=Salmonella typhi GN=ydiU P... [more]
YDIU_SALPK1.501e-1239.42UPF0061 protein ydiU OS=Salmonella paratyphi A (st... [more]
YDIU_SALPB1.501e-1239.42UPF0061 protein ydiU OS=Salmonella paratyphi B (st... [more]

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Properties
Property NameValue
Genbank descriptionC34106F07EF PostHarvP1 Citrus clementina cDNA clone C34106F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931575 ID=FC931575; Name=FC931575; organism=Citrus clementina; type=EST; length=691bp
CTCAACTAAACCACACCTCCTCTTCTCTTCACTCTCTTCTTCTTCTTCTT
CTCTCCGCCCTCGCCTCCCCAAATTCCCGTTCTACCCCGCCTACTTTACA
AAGTCTCCATCCTGTCCTTCCATCGCATGCCACGTCAGCACGACAGGCGG
CGGCGGTGCTGCGCAGATGGAGTCGAGTGCGTCTGTCGATTCGGTGACGC
ATGATTTGAAGAATCAGAGATTGGATACGGAAACGGAAACGGACGGCGGA
GATGAGAGCAAGATGACGAAGAAGCTGAAAGCTCTTGAGGATCTGAATTG
GGACCACTCGTTTGTTCGAGAGTTGCCTGGTGATCCCAGGACTGATTCTA
TCCCTCGTGAGGTATTGCATGCCTGTTATACTAAAGTTTCTCCGTCAGCT
GAAGTAGAAAATCCTCAGCTTGTTGCGTGGTCAGAATCAGTGGCCGATTC
TCTTGAGTTGGATCCTAAAGAATTTGAAAGACCAGATTTTCCCCTCTTTT
TTTCTGGGGCTACTCCTTTGGCGGGAGCGGTGCCATATGCTCAATGCTAC
GGTGGACATCAATTTGGCATGTGGGCTGGTCAGCTGGGTGATGGTCGGGC
AATAACTCTTGGCGAGATCCTGAATTTGAAGTCGGAAAGGTGGGAATTGC
AGCTTAAGGAGCTGGGAAGACTCCATATAGCCGCTTTGCTG
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