FC931575

Overview
NameFC931575
Unique NameFC931575
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: YDIU_SALPA (UPF0061 protein ydiU OS=Salmonella paratyphi A GN=ydiU PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.501e-12
Identity = 41/104 (39.42%), Postives = 58/104 (55.77%), Query Frame = 2
Query:  356 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            R+ L A YT + P+  ++N +L+ +++ +A  L +    F+  +    + G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LK  G
Sbjct:   10 RDELPATYTALLPTP-LKNARLIWYNDELAQQLAIPASLFDATNGAGVWGGETLLPGMSPVAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGSTLDWHLKGAG 112          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: YDIU_SALNS (UPF0061 protein ydiU OS=Salmonella newport (strain SL254) GN=ydiU PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.501e-12
Identity = 41/104 (39.42%), Postives = 58/104 (55.77%), Query Frame = 2
Query:  356 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            R+ L A YT + P+  ++N +L+ +++ +A  L +    F+  +    + G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LK  G
Sbjct:   10 RDELPATYTALLPTP-LKNARLIWYNDKLAQQLAIPASLFDATNGAGVWGGETLLPGMSPVAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGSTLDWHLKGAG 112          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: YDIU_SALHS (UPF0061 protein ydiU OS=Salmonella heidelberg (strain SL476) GN=ydiU PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.501e-12
Identity = 41/104 (39.42%), Postives = 58/104 (55.77%), Query Frame = 2
Query:  356 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            R+ L A YT + P+  ++N +L+ +++ +A  L +    F+  +    + G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LK  G
Sbjct:   10 RDELPATYTALLPTP-LKNARLIWYNDKLAQQLAIPASLFDATNGAGVWGGETLLPGMSPVAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGSTLDWHLKGAG 112          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: YDIU_SALDC (UPF0061 protein ydiU OS=Salmonella dublin (strain CT_02021853) GN=ydiU PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.501e-12
Identity = 41/104 (39.42%), Postives = 58/104 (55.77%), Query Frame = 2
Query:  356 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            R+ L A YT + P+  ++N +L+ +++ +A  L +    F+  +    + G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LK  G
Sbjct:   10 RDELPATYTALLPTP-LKNARLIWYNDKLAQQLAIPASLFDATNGAGVWGGETLLPGMSPVAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGSTLDWHLKGAG 112          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: YDIU_SALA4 (UPF0061 protein ydiU OS=Salmonella agona (strain SL483) GN=ydiU PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.501e-12
Identity = 41/104 (39.42%), Postives = 58/104 (55.77%), Query Frame = 2
Query:  356 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            R+ L A YT + P+  ++N +L+ +++ +A  L +    F+  +    + G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LK  G
Sbjct:   10 RDELPATYTALLPTP-LKNARLIWYNDELAQQLAIPASLFDATNGAGVWGGETLLPGMSPVAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGSTLDWHLKGAG 112          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y4142_BRAJA (UPF0061 protein bll4142 OS=Bradyrhizobium japonicum GN=bll4142 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.501e-12
Identity = 40/97 (41.24%), Postives = 56/97 (57.73%), Query Frame = 2
Query:  377 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            + +V+P+  V  P+L+  +  +A  L LDP   E P+     +G T   GA P A  Y GHQFG +  QLGDGRAI LGE+++    R ++QLK  G
Sbjct:   19 FARVAPTP-VAAPRLIKLNRPLAVQLGLDPNMLETPEGAEILAGKTVPDGADPIAMAYAGHQFGQFVPQLGDGRAILLGEVIDRDGVRRDIQLKGSG 114          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y3939_BACHD (UPF0061 protein BH3939 OS=Bacillus halodurans GN=BH3939 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.501e-12
Identity = 43/98 (43.88%), Postives = 57/98 (58.16%), Query Frame = 2
Query:  377 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            ++ V P   VE P+LV  ++S+A SL LDP   +  +     +G     GA P AQ Y GHQFG +   LGDGRAI LGE +    ER+++QLK  GR
Sbjct:   26 FSNVEPEP-VEAPKLVILNDSLAQSLGLDPVALQHQNSIAVLAGNEVPKGAAPLAQAYAGHQFGHFT-MLGDGRAILLGEQITPNGERFDIQLKGSGR 121          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y1733_CHRVO (UPF0061 protein CV_1733 OS=Chromobacterium violaceum GN=CV_1733 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.501e-12
Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 2
Query:  413 PQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            P+L+ W+  +AD L LD  + ++ +    FSGA    GA P AQ Y GHQFG  +  LGDGRA+ LGE+ +   +R ++ LK  G+
Sbjct:   16 PELLYWNAELADELGLDAGQTDKGELARLFSGADIPEGAQPIAQAYAGHQFGGLSPSLGDGRALLLGEVTDRNGQRRDIALKGSGQ 101          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: YDIU_SALEP (UPF0061 protein ydiU OS=Salmonella enteritidis PT4 (strain P125109) GN=ydiU PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 41/104 (39.42%), Postives = 58/104 (55.77%), Query Frame = 2
Query:  356 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            R+ L A YT + P+  ++N +L+ +++ +A  L +    F+  +    + G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LK  G
Sbjct:   10 RDELPATYTALLPTP-LKNARLIWYNDKLAQQLAIPASLFDATNGAGVWGGETLLPGMSPVAQVYSGHQFGVWAGQLGDGRGILLGEQLLAYGSTLDWHLKGAG 112          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y2581_POLSJ (UPF0061 protein Bpro_2581 OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=Bpro_2581 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 48/126 (38.10%), Postives = 65/126 (51.59%), Query Frame = 2
Query:  293 LNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            L W +SF R  PG               YT++ P+  + +P  V  S+++A  L L+    E  +     +G    AG+ P A  Y GHQFG+WAGQLGDGRAI LG+ L   +   E+QLK  GR
Sbjct:   19 LKWGNSFARLGPG--------------FYTELQPTP-LPSPYWVGRSQALARELGLEDHWLESAEALEVLTGNRSTAGSRPLASVYSGHQFGVWAGQLGDGRAILLGD-LQTPAGPQEIQLKGAGR 128          
The following BLAST results are available for this feature:
BLAST of FC931575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
YDIU_SALPA1.501e-1239.42UPF0061 protein ydiU OS=Salmonella paratyphi A GN=... [more]
YDIU_SALNS1.501e-1239.42UPF0061 protein ydiU OS=Salmonella newport (strain... [more]
YDIU_SALHS1.501e-1239.42UPF0061 protein ydiU OS=Salmonella heidelberg (str... [more]
YDIU_SALDC1.501e-1239.42UPF0061 protein ydiU OS=Salmonella dublin (strain ... [more]
YDIU_SALA41.501e-1239.42UPF0061 protein ydiU OS=Salmonella agona (strain S... [more]
Y4142_BRAJA1.501e-1241.24UPF0061 protein bll4142 OS=Bradyrhizobium japonicu... [more]
Y3939_BACHD1.501e-1243.88UPF0061 protein BH3939 OS=Bacillus halodurans GN=B... [more]
Y1733_CHRVO1.501e-1241.86UPF0061 protein CV_1733 OS=Chromobacterium violace... [more]
YDIU_SALEP1.960e-1239.42UPF0061 protein ydiU OS=Salmonella enteritidis PT4... [more]
Y2581_POLSJ1.960e-1238.10UPF0061 protein Bpro_2581 OS=Polaromonas sp. (stra... [more]

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Properties
Property NameValue
Genbank descriptionC34106F07EF PostHarvP1 Citrus clementina cDNA clone C34106F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931575 ID=FC931575; Name=FC931575; organism=Citrus clementina; type=EST; length=691bp
CTCAACTAAACCACACCTCCTCTTCTCTTCACTCTCTTCTTCTTCTTCTT
CTCTCCGCCCTCGCCTCCCCAAATTCCCGTTCTACCCCGCCTACTTTACA
AAGTCTCCATCCTGTCCTTCCATCGCATGCCACGTCAGCACGACAGGCGG
CGGCGGTGCTGCGCAGATGGAGTCGAGTGCGTCTGTCGATTCGGTGACGC
ATGATTTGAAGAATCAGAGATTGGATACGGAAACGGAAACGGACGGCGGA
GATGAGAGCAAGATGACGAAGAAGCTGAAAGCTCTTGAGGATCTGAATTG
GGACCACTCGTTTGTTCGAGAGTTGCCTGGTGATCCCAGGACTGATTCTA
TCCCTCGTGAGGTATTGCATGCCTGTTATACTAAAGTTTCTCCGTCAGCT
GAAGTAGAAAATCCTCAGCTTGTTGCGTGGTCAGAATCAGTGGCCGATTC
TCTTGAGTTGGATCCTAAAGAATTTGAAAGACCAGATTTTCCCCTCTTTT
TTTCTGGGGCTACTCCTTTGGCGGGAGCGGTGCCATATGCTCAATGCTAC
GGTGGACATCAATTTGGCATGTGGGCTGGTCAGCTGGGTGATGGTCGGGC
AATAACTCTTGGCGAGATCCTGAATTTGAAGTCGGAAAGGTGGGAATTGC
AGCTTAAGGAGCTGGGAAGACTCCATATAGCCGCTTTGCTG
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