FC931575

Overview
NameFC931575
Unique NameFC931575
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: YDIU_SALSV (UPF0061 protein ydiU OS=Salmonella schwarzengrund (strain CVM19633) GN=ydiU PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.560e-12
Identity = 41/104 (39.42%), Postives = 58/104 (55.77%), Query Frame = 2
Query:  356 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            R+ L A YT + P+  ++N +L+ +++ +A  L +    F+  +    + G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LK  G
Sbjct:   10 RDELPATYTALLPTP-LKNARLIWYNDELAQQLAIPASLFDVTNGAGVWGGETLLPGMSPVAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGSTLDWHLKGAG 112          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: YDIU_SALPC (UPF0061 protein ydiU OS=Salmonella paratyphi C (strain RKS4594) GN=ydiU PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.560e-12
Identity = 41/104 (39.42%), Postives = 58/104 (55.77%), Query Frame = 2
Query:  356 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            R+ L A YT + P+  ++N +L+ +++ +A  L +    F+  +    + G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LK  G
Sbjct:   10 RDELPATYTALLPTL-LKNARLIWYNDKLAQQLAIPASLFDVTNGAGVWGGETLLPGMSPVAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGSTLDWHLKGAG 112          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: YDIU_SALAR (UPF0061 protein ydiU OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=ydiU PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.560e-12
Identity = 41/104 (39.42%), Postives = 58/104 (55.77%), Query Frame = 2
Query:  356 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            R+ L A YT + P+  ++N +L+ +++ +A  L +    F+  +    + G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LK  G
Sbjct:   10 RDELPATYTALLPTP-LKNARLIWYNDKLAQQLAIPASLFDVTNGAGVWGGETLLPGMSPVAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGSTLDWHLKGAG 112          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y5413_PSEA8 (UPF0061 protein PLES_54131 OS=Pseudomonas aeruginosa (strain LESB58) GN=PLES_54131 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.560e-12
Identity = 47/132 (35.61%), Postives = 68/132 (51.52%), Query Frame = 2
Query:  275 LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            +K+L+DL++D+ F R L G   T+ +P            P AE   P+LV  S +    L+L  +  +   F   F G    + A P A  Y GHQFG +  +LGDGR + LGE++N   E W+L LK  G+
Sbjct:    1 MKSLDDLDFDNRFAR-LGGAFSTEVLP-----------DPIAE---PRLVVASPAALALLDLPAETSDEALFAELFGGHKLWSEAEPRAMVYSGHQFGSYNPRLGDGRGLLLGEVINQAGEHWDLHLKGAGQ 117          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y5023_PSEAE (UPF0061 protein PA5023 OS=Pseudomonas aeruginosa GN=PA5023 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.560e-12
Identity = 47/132 (35.61%), Postives = 68/132 (51.52%), Query Frame = 2
Query:  275 LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            +K+L+DL++D+ F R L G   T+ +P            P AE   P+LV  S +    L+L  +  +   F   F G    + A P A  Y GHQFG +  +LGDGR + LGE++N   E W+L LK  G+
Sbjct:    1 MKSLDDLDFDNRFAR-LGGAFSTEVLP-----------DPIAE---PRLVVASPAALALLDLPAETSDEALFAELFGGHKLWSEAEPRAMVYSGHQFGSYNPRLGDGRGLLLGEVINQAGEHWDLHLKGAGQ 117          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y3522_BACC1 (UPF0061 protein BCE_3522 OS=Bacillus cereus (strain ATCC 10987) GN=BCE_3522 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.560e-12
Identity = 40/100 (40.00%), Postives = 61/100 (61.00%), Query Frame = 2
Query:  368 HACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            H+ YT++ P+  V +P+LV  + S+A SL  +P+E ++      F+G     GA P AQ Y GHQFG +   LGDGRA+ +GE +    +R+++QLK  G
Sbjct:   20 HSFYTEIPPTP-VSSPELVKLNHSLAISLGFNPEELKKETEIAIFAGNALPEGAHPLAQAYAGHQFGHF-NMLGDGRALLIGEQITPSGKRFDIQLKGSG 117          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y2948_RHOPS (UPF0061 protein RPD_2948 OS=Rhodopseudomonas palustris (strain BisB5) GN=RPD_2948 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.560e-12
Identity = 39/98 (39.80%), Postives = 57/98 (58.16%), Query Frame = 2
Query:  377 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            + +V+P+  V  P+L+  +  +A+ L LDP   + P+     +GA    GA   A  Y GHQFG +  QLGDGRAI LGE+++    R ++QLK  GR
Sbjct:   19 FARVAPTP-VAAPRLIKLNRPLAERLGLDPDWLDSPEGAEILAGARLPEGAASIAMAYAGHQFGQFVPQLGDGRAILLGEVIDRDGVRRDIQLKGSGR 115          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y1802_JANSC (UPF0061 protein Jann_1802 OS=Jannaschia sp. (strain CCS1) GN=Jann_1802 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.560e-12
Identity = 40/98 (40.82%), Postives = 58/98 (59.18%), Query Frame = 2
Query:  377 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            +T++SP    E P L+A +  +A+ L +   E +     LF     P+ GA P AQ Y GHQFG W+ QLGDGRA+ LGE++     R+++QLK  G+
Sbjct:   19 FTRMSPKPVAE-PGLIAVNRPLAERLGITLGESDAELAQLFAGNVVPM-GAAPLAQVYAGHQFGGWSQQLGDGRAVMLGEVVAPDGARFDVQLKGAGQ 114          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y2424_ALCBS (UPF0061 protein ABO_2424 OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=ABO_2424 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.343e-12
Identity = 45/111 (40.54%), Postives = 62/111 (55.86%), Query Frame = 2
Query:  338 RTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            R D+  R +  A ++   P   V  P  V +++++A  L LD +     + P FFSG   LAG+ P AQ Y GHQFG     LGDGRA+ LGE L+   +R ++QLK  GR
Sbjct:    8 RFDNTYRRLPEALFSDCLPQP-VSTPAFVLFNDNLAQELGLDSEALS--EHPEFFSGNELLAGSEPIAQAYAGHQFGSLT-MLGDGRAVLLGEQLDGHGQRHDIQLKGAGR 114          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y5348_METC4 (UPF0061 protein Mchl_5348 OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=Mchl_5348 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.367e-12
Identity = 41/97 (42.27%), Postives = 58/97 (59.79%), Query Frame = 2
Query:  377 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            + +V+P+A VE P+L+  + ++A  L LDP   E P+     +G     GA P A  Y GHQFG +  QLGDGRAI LGE++  +  R ++QLK  G
Sbjct:   19 FGRVAPTA-VEAPRLIRLNRALAVDLGLDPDRLESPEGVEVLAGQRVPEGAEPLAAAYAGHQFGQFVPQLGDGRAILLGEVVG-RDGRRDIQLKGSG 113          
The following BLAST results are available for this feature:
BLAST of FC931575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
YDIU_SALSV2.560e-1239.42UPF0061 protein ydiU OS=Salmonella schwarzengrund ... [more]
YDIU_SALPC2.560e-1239.42UPF0061 protein ydiU OS=Salmonella paratyphi C (st... [more]
YDIU_SALAR2.560e-1239.42UPF0061 protein ydiU OS=Salmonella arizonae (strai... [more]
Y5413_PSEA82.560e-1235.61UPF0061 protein PLES_54131 OS=Pseudomonas aerugino... [more]
Y5023_PSEAE2.560e-1235.61UPF0061 protein PA5023 OS=Pseudomonas aeruginosa G... [more]
Y3522_BACC12.560e-1240.00UPF0061 protein BCE_3522 OS=Bacillus cereus (strai... [more]
Y2948_RHOPS2.560e-1239.80UPF0061 protein RPD_2948 OS=Rhodopseudomonas palus... [more]
Y1802_JANSC2.560e-1240.82UPF0061 protein Jann_1802 OS=Jannaschia sp. (strai... [more]
Y2424_ALCBS3.343e-1240.54UPF0061 protein ABO_2424 OS=Alcanivorax borkumensi... [more]
Y5348_METC44.367e-1242.27UPF0061 protein Mchl_5348 OS=Methylobacterium chlo... [more]

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Properties
Property NameValue
Genbank descriptionC34106F07EF PostHarvP1 Citrus clementina cDNA clone C34106F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931575 ID=FC931575; Name=FC931575; organism=Citrus clementina; type=EST; length=691bp
CTCAACTAAACCACACCTCCTCTTCTCTTCACTCTCTTCTTCTTCTTCTT
CTCTCCGCCCTCGCCTCCCCAAATTCCCGTTCTACCCCGCCTACTTTACA
AAGTCTCCATCCTGTCCTTCCATCGCATGCCACGTCAGCACGACAGGCGG
CGGCGGTGCTGCGCAGATGGAGTCGAGTGCGTCTGTCGATTCGGTGACGC
ATGATTTGAAGAATCAGAGATTGGATACGGAAACGGAAACGGACGGCGGA
GATGAGAGCAAGATGACGAAGAAGCTGAAAGCTCTTGAGGATCTGAATTG
GGACCACTCGTTTGTTCGAGAGTTGCCTGGTGATCCCAGGACTGATTCTA
TCCCTCGTGAGGTATTGCATGCCTGTTATACTAAAGTTTCTCCGTCAGCT
GAAGTAGAAAATCCTCAGCTTGTTGCGTGGTCAGAATCAGTGGCCGATTC
TCTTGAGTTGGATCCTAAAGAATTTGAAAGACCAGATTTTCCCCTCTTTT
TTTCTGGGGCTACTCCTTTGGCGGGAGCGGTGCCATATGCTCAATGCTAC
GGTGGACATCAATTTGGCATGTGGGCTGGTCAGCTGGGTGATGGTCGGGC
AATAACTCTTGGCGAGATCCTGAATTTGAAGTCGGAAAGGTGGGAATTGC
AGCTTAAGGAGCTGGGAAGACTCCATATAGCCGCTTTGCTG
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