FC931576

Overview
NameFC931576
Unique NameFC931576
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931576_ssr123 microsatellite FC931576_ssr123:123..140. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15356 contig Ccv1_Contig15356:1..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC931576 vs. ExPASy Swiss-Prot
Match: 6PGD_STAAS (6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus aureus (strain MSSA476) GN=gnd PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.952e-40
Identity = 84/170 (49.41%), Postives = 116/170 (68.24%), Query Frame = 3 
Query:  183 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFLDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVT 692
            +IG+ GLAVMG+NLA NI  +G+ +SV+NR++ K D  VE +K +   P +     E FVNS++KPR I+++V+AG   D TI +L   ++ GD +IDGGN  Y++T RR KA+A+  + ++GMGVSGGE GA  GPSLMPGG  EAY  + DIL  +AA+  D   CVT
Sbjct:    4 QIGVIGLAVMGKNLAWNIESRGYSVSVFNRSSEKTDLMVEESKGKNIHPTYSL---EEFVNSLEKPRKILLMVQAGKATDATIDSLLPLLDDGDILIDGGNTNYQDTIRRNKALAQSAINFIGMGVSGGEIGALTGPSLMPGGQEEAYNKVADILDAIAAKAKDGASCVT 170
[Close]
BLAST of FC931576 vs. ExPASy Swiss-Prot
Match: 6PGD_STAAR (6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus aureus (strain MRSA252) GN=gnd PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.952e-40
Identity = 84/170 (49.41%), Postives = 116/170 (68.24%), Query Frame = 3 
Query:  183 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFLDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVT 692
            +IG+ GLAVMG+NLA NI  +G+ +SV+NR++ K D  VE +K +   P +     E FVNS++KPR I+++V+AG   D TI +L   ++ GD +IDGGN  Y++T RR KA+A+  + ++GMGVSGGE GA  GPSLMPGG  EAY  + DIL  +AA+  D   CVT
Sbjct:    4 QIGVIGLAVMGKNLAWNIESRGYSVSVFNRSSEKTDLMVEESKGKNIHPTYSL---EEFVNSLEKPRKILLMVQAGKATDATIDSLLPLLDDGDILIDGGNTNYQDTIRRNKALAQSAINFIGMGVSGGEIGALTGPSLMPGGQEEAYNKVADILDAIAAKAKDGASCVT 170
[Close]
BLAST of FC931576 vs. ExPASy Swiss-Prot
Match: 6PGD_STAAN (6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus aureus (strain N315) GN=gnd PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.952e-40
Identity = 84/170 (49.41%), Postives = 116/170 (68.24%), Query Frame = 3 
Query:  183 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFLDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVT 692
            +IG+ GLAVMG+NLA NI  +G+ +SV+NR++ K D  VE +K +   P +     E FVNS++KPR I+++V+AG   D TI +L   ++ GD +IDGGN  Y++T RR KA+A+  + ++GMGVSGGE GA  GPSLMPGG  EAY  + DIL  +AA+  D   CVT
Sbjct:    4 QIGVIGLAVMGKNLAWNIESRGYSVSVFNRSSEKTDLMVEESKGKNIHPTYSL---EEFVNSLEKPRKILLMVQAGKATDATIDSLLPLLDDGDILIDGGNTNYQDTIRRNKALAQSAINFIGMGVSGGEIGALTGPSLMPGGQEEAYNKVADILDAIAAKAKDGASCVT 170
[Close]
BLAST of FC931576 vs. ExPASy Swiss-Prot
Match: 6PGD_STAAC (6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus aureus (strain COL) GN=gnd PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.952e-40
Identity = 84/170 (49.41%), Postives = 116/170 (68.24%), Query Frame = 3 
Query:  183 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFLDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVT 692
            +IG+ GLAVMG+NLA NI  +G+ +SV+NR++ K D  VE +K +   P +     E FVNS++KPR I+++V+AG   D TI +L   ++ GD +IDGGN  Y++T RR KA+A+  + ++GMGVSGGE GA  GPSLMPGG  EAY  + DIL  +AA+  D   CVT
Sbjct:    4 QIGVIGLAVMGKNLAWNIESRGYSVSVFNRSSEKTDLMVEESKGKNIHPTYSL---EEFVNSLEKPRKILLMVQAGKATDATIDSLLPLLDDGDILIDGGNTNYQDTIRRNKALAQSAINFIGMGVSGGEIGALTGPSLMPGGQEEAYNKVADILDAIAAKAKDGASCVT 170
[Close]
BLAST of FC931576 vs. ExPASy Swiss-Prot
Match: 6PGD_BUCAP (6-phosphogluconate dehydrogenase, decarboxylating OS=Buchnera aphidicola subsp. Schizaphis graminum GN=gnd PE=3 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 3.952e-40
Identity = 79/170 (46.47%), Postives = 120/170 (70.59%), Query Frame = 3 
Query:  183 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFLDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVT 692
            ++G+ G+AVMG+NLALNI  K + +S++NRT S  +E +   K++   P F   D   FVNS++KPR I+++VK+G P DETI+ +  Y+ KGD +IDGGN +Y+++ RR   + + G+ ++GMGVSGGE GA +GPS+MPGGS EAY  +  +L K++A+  +  PCV+
Sbjct:    5 QVGVIGMAVMGRNLALNIESKKYTVSIFNRTQSVTEEVINNNKEKKIFPYFSIKD---FVNSLRKPRCILLMVKSGQPTDETIQFILPYLNKGDILIDGGNTFYKDSIRRSNDLMKCGINFIGMGVSGGELGALNGPSIMPGGSREAYDLVSSMLKKISAKFKNE-PCVS 170
[Close]
BLAST of FC931576 vs. ExPASy Swiss-Prot
Match: 6PGD_CANAL (6-phosphogluconate dehydrogenase, decarboxylating OS=Candida albicans GN=DOR14 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.162e-40
Identity = 86/167 (51.50%), Postives = 118/167 (70.66%), Query Frame = 3 
Query:  186 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFLDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPC 686
            IGL GLAVMGQNL LN+A+ G+ +  YNRTT+KVD  +E   K   +   G    +  V+ +++PR I++LVKAGAPVDE I  L  Y+E+GD IIDGGN  + ++ RR + +A+ G+L++G GVSGGEEGAR GPSLMPGG+ +A+ +I++I   VAA+  D  PC
Sbjct:   31 IGLIGLAVMGQNLILNMADHGYTVVAYNRTTAKVDRFLENEAKGKSI--LGAHSIKELVDQLKRPRRIMLLVKAGAPVDEFINQLLPYLEEGDIIIDGGNSHFPDSNRRYEELAKKGILFVGSGVSGGEEGARTGPSLMPGGNEKAWPHIKEIFQDVAAK-SDGEPC 194
[Close]
BLAST of FC931576 vs. ExPASy Swiss-Prot
Match: 6PGD_STAAM (6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=gnd PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.804e-40
Identity = 84/170 (49.41%), Postives = 115/170 (67.65%), Query Frame = 3 
Query:  183 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFLDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVT 692
            +IG+ GLAVMG+NLA NI   G+ +SV+NR++ K D  VE +K +   P +     E FVNS++KPR I+++V+AG   D TI +L   ++ GD +IDGGN  Y++T RR KA+A+  + ++GMGVSGGE GA  GPSLMPGG  EAY  + DIL  +AA+  D   CVT
Sbjct:    4 QIGVIGLAVMGKNLAWNIESHGYSVSVFNRSSEKTDLMVEESKGKNIHPTYSL---EEFVNSLEKPRKILLMVQAGKATDATIDSLLPLLDDGDILIDGGNTNYQDTIRRNKALAQSAINFIGMGVSGGEIGALTGPSLMPGGQEEAYNKVADILDAIAAKAKDGASCVT 170
[Close]
BLAST of FC931576 vs. ExPASy Swiss-Prot
Match: 6PGD_SALTY (6-phosphogluconate dehydrogenase, decarboxylating OS=Salmonella typhimurium GN=gnd PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.562e-39
Identity = 81/170 (47.65%), Postives = 116/170 (68.24%), Query Frame = 3 
Query:  183 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFLDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVT 692
            +IG+ G+AVMG+NLALNI  +G+ +SV+NR+  K +E +  A+  G   L  +   + FV S++ PR I+++VKAGA  D  I +L  Y+EKGD IIDGGN ++++T RR + ++  G  ++G GVSGGEEGA  GPS+MPGG  +AY+ +  IL K+AA   D  PCVT
Sbjct:    5 QIGVVGMAVMGRNLALNIESRGYTVSVFNRSREKTEEVI--AENPGK-KLVPYYTVKEFVESLETPRRILLMVKAGAGTDAAIDSLKPYLEKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIMPGGQKDAYELVAPILTKIAAVAEDGEPCVT 171
[Close]
BLAST of FC931576 vs. ExPASy Swiss-Prot
Match: 6PGD2_YEAST (6-phosphogluconate dehydrogenase, decarboxylating 2 OS=Saccharomyces cerevisiae GN=GND2 PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.562e-39
Identity = 85/172 (49.42%), Postives = 115/172 (66.86%), Query Frame = 3 
Query:  171 KQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFLDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPC 686
            K +  +GL GLAVMGQNL LN A+ GF +  YNRT SKVD  +    K   +   G    E  V  ++KPR I++L+KAGAPVD  IK L  +++KGD IIDGGN  + +T RR + + + G+L++G GVSGGE+GAR GPSLMPGGS EA+ +I++I   +AA+  +  PC
Sbjct:    3 KAVGDLGLVGLAVMGQNLILNAADHGFTVVAYNRTQSKVDRFLANEAKGKSI--IGATSIEDLVAKLKKPRKIMLLIKAGAPVDTLIKELVPHLDKGDIIIDGGNSHFPDTNRRYEELTKQGILFVGSGVSGGEDGARFGPSLMPGGSAEAWPHIKNIFQSIAAK-SNGEPC 171
[Close]
BLAST of FC931576 vs. ExPASy Swiss-Prot
Match: 6PGD_ECOLI (6-phosphogluconate dehydrogenase, decarboxylating OS=Escherichia coli (strain K12) GN=gnd PE=1 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 3.346e-39
Identity = 80/170 (47.06%), Postives = 116/170 (68.24%), Query Frame = 3 
Query:  183 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFLDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVT 692
            +IG+ G+AVMG+NLALNI  +G+ +S++NR+  K +E +  A+  G   L  +   + FV S++ PR I+++VKAGA  D  I +L  Y++KGD IIDGGN ++++T RR + ++  G  ++G GVSGGEEGA  GPS+MPGG  EAY+ +  IL K+AA   D  PCVT
Sbjct:    5 QIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVI--AENPGK-KLVPYYTVKEFVESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVT 171
The following BLAST results are available for this feature:
BLAST of FC931576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
6PGD_STAAS3.952e-4049.416-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_STAAR3.952e-4049.416-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_STAAN3.952e-4049.416-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_STAAC3.952e-4049.416-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_BUCAP3.952e-4046.476-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_CANAL5.162e-4051.506-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_STAAM8.804e-4049.416-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_SALTY2.562e-3947.656-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD2_YEAST2.562e-3949.426-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_ECOLI3.346e-3947.066-phosphogluconate dehydrogenase, decarboxylating ... [more]

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Properties
Property NameValue
Genbank descriptionC34106F08EF PostHarvP1 Citrus clementina cDNA clone C34106F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931576 ID=FC931576; Name=FC931576; organism=Citrus clementina; type=EST; length=709bp
GATTGACGTATTGTATTTTTAATCATTTATTATGTTTATAGAGTCTCTGC
TCTGCTAATCCCAGATCACATTTTGGGTTGATTTGTCTGAATTTTCCTTC
TCTTGTTTTTGCATCAGATTTTAGAAGAAGAAGAAGAAGAATTTTTTAAG
AGGAAGATATGGTTGAGGGCAAACAACTTACGAGAATAGGCCTTGCTGGT
CTGGCGGTCATGGGCCAAAATCTCGCCCTCAACATTGCTGAAAAAGGCTT
TCCCATTTCTGTTTATAACCGAACTACCTCCAAAGTTGATGAGACAGTTG
AAAGAGCTAAAAAGGAGGGAGATCTGCCTTTATTTGGTTTCCTTGATCCT
GAATCGTTTGTCAATTCAATCCAAAAACCTCGGGTGATAATCATGCTTGT
TAAAGCTGGTGCACCTGTTGACGAAACCATTAAGACCCTCTCCGCTTACA
TGGAGAAAGGTGATTGCATCATTGATGGGGGTAATGAGTGGTATGAGAAC
ACCGAGAGAAGAGAGAAAGCCATGGCTGAATTGGGTTTGCTCTACCTTGG
AATGGGAGTTTCAGGTGGTGAAGAGGGTGCAAGACATGGTCCTTCTTTGA
TGCCTGGAGGATCATTCGAGGCTTACAAGTATATTGAAGACATTCTTCTA
AAGGTCGCGGCTCAAGTTCCTGATAGCGGCCCCTGTGTGACTACATTAGC
AAGGTGGAT
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