FC931576

Overview
NameFC931576
Unique NameFC931576
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931576_ssr123 microsatellite FC931576_ssr123:123..140. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15356 contig Ccv1_Contig15356:1..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931576 vs. ExPASy Swiss-Prot
Match: 6PGD_SHIFL (6-phosphogluconate dehydrogenase, decarboxylating OS=Shigella flexneri GN=gnd PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.370e-39
Identity = 80/170 (47.06%), Postives = 116/170 (68.24%), Query Frame = 3
Query:  183 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFLDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVT 692
            +IG+ G+AVMG+NLALNI  +G+ +S++NR+  K +E +  A+  G   L  +   + FV S++ PR I+++VKAGA  D  I +L  Y++KGD IIDGGN ++++T RR + ++  G  ++G GVSGGEEGA  GPS+MPGG  EAY+ +  IL K+AA   D  PCVT
Sbjct:    5 QIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVI--AENPGK-KLAPYYTVKEFVESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVT 171          
BLAST of FC931576 vs. ExPASy Swiss-Prot
Match: 6PGD_KLEPN (6-phosphogluconate dehydrogenase, decarboxylating OS=Klebsiella pneumoniae GN=gnd PE=3 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 5.707e-39
Identity = 80/170 (47.06%), Postives = 116/170 (68.24%), Query Frame = 3
Query:  183 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFLDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVT 692
            +IG+ G+AVMG+NLALNI  +G+ +SV+NR+  K +E +  A+  G   L  +   + FV S++ PR I+++VKAGA  D  I +L  Y++KGD IIDGGN ++++T RR + ++  G  ++G GVSGGEEGA  GPS+MPGG  EAY+ +  IL ++AA   D  PCVT
Sbjct:    5 QIGVVGMAVMGRNLALNIESRGYTVSVFNRSREKTEEVI--AENTGK-KLVPYYTVQEFVESLETPRRILLMVKAGAGTDSAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILKQIAAVAEDGEPCVT 171          
BLAST of FC931576 vs. ExPASy Swiss-Prot
Match: 6PGD1_YEAST (6-phosphogluconate dehydrogenase, decarboxylating 1 OS=Saccharomyces cerevisiae GN=GND1 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.707e-39
Identity = 82/166 (49.40%), Postives = 113/166 (68.07%), Query Frame = 3
Query:  189 GLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFLDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPC 686
            GL GLAVMGQNL LN A+ GF +  YNRT SKVD  +    K   +   G    E F++ +++PR +++LVKAGAPVD  I  +   +EKGD IIDGGN  + ++ RR + + + G+L++G GVSGGEEGAR+GPSLMPGGS EA+ +I++I   ++A+  D  PC
Sbjct:    6 GLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSI--IGATSIEDFISKLKRPRKVMLLVKAGAPVDALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGSGVSGGEEGARYGPSLMPGGSEEAWPHIKNIFQSISAK-SDGEPC 168          
BLAST of FC931576 vs. ExPASy Swiss-Prot
Match: 6PGD_STAES (6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gnd PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.453e-39
Identity = 83/170 (48.82%), Postives = 111/170 (65.29%), Query Frame = 3
Query:  183 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFLDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVT 692
            +IG+ GLAVMG+NLA NI  +G+ +SVYNR+  K DE V+ +      P +     E FV S++KPR I+++VKAG   D TI  L   ++  D +IDGGN  Y++T RR KA+AE  + ++GMGVSGGE GA  GPSLMPGG  +AY  + DIL  +AA+  D   CVT
Sbjct:    4 QIGVVGLAVMGKNLAWNIESRGYSVSVYNRSRQKTDEMVKESPGREIYPTYSL---EEFVESLEKPRKILLMVKAGPATDATIDGLLPLLDDDDILIDGGNTNYQDTIRRNKALAESSINFIGMGVSGGEIGALTGPSLMPGGQKDAYNKVSDILDAIAAKAQDGASCVT 170          
BLAST of FC931576 vs. ExPASy Swiss-Prot
Match: 6PGD_STAEQ (6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=gnd PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.453e-39
Identity = 83/170 (48.82%), Postives = 111/170 (65.29%), Query Frame = 3
Query:  183 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFLDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVT 692
            +IG+ GLAVMG+NLA NI  +G+ +SVYNR+  K DE V+ +      P +     E FV S++KPR I+++VKAG   D TI  L   ++  D +IDGGN  Y++T RR KA+AE  + ++GMGVSGGE GA  GPSLMPGG  +AY  + DIL  +AA+  D   CVT
Sbjct:    4 QIGVVGLAVMGKNLAWNIESRGYSVSVYNRSRQKTDEMVKESPGREIYPTYSL---EEFVESLEKPRKILLMVKAGPATDATIDGLLPLLDDDDILIDGGNTNYQDTIRRNKALAESSINFIGMGVSGGEIGALTGPSLMPGGQKDAYNKVSDILDAIAAKAQDGASCVT 170          
BLAST of FC931576 vs. ExPASy Swiss-Prot
Match: 6PGD_HAEDU (6-phosphogluconate dehydrogenase, decarboxylating OS=Haemophilus ducreyi GN=gnd PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.734e-39
Identity = 81/167 (48.50%), Postives = 110/167 (65.87%), Query Frame = 3
Query:  186 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFLDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPC 686
            IG+ GLAVMGQNL LN+ + GF +  YNRT SKVDE +    K  D  + G    E     ++KPR I+++V+AG  VD+ I  L  ++E GD IIDGGN  Y +T RR   +AE G+ ++G GVSGGEEGARHGPS+MPGG+ EA+ +++ IL  ++A+     PC
Sbjct:    7 IGVIGLAVMGQNLILNMNDNGFKVVAYNRTASKVDEFLAGEAK--DTNIIGAYSLEDLAAKLEKPRKIMLMVRAGEVVDQFIDALLPHLEAGDIIIDGGNSNYPDTNRRTITLAEKGIRFIGTGVSGGEEGARHGPSIMPGGNEEAWPFVKPILQAISAKTDKDEPC 171          
BLAST of FC931576 vs. ExPASy Swiss-Prot
Match: 6PGD9_ECOLX (6-phosphogluconate dehydrogenase, decarboxylating OS=Escherichia coli GN=gnd PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.271e-38
Identity = 79/170 (46.47%), Postives = 116/170 (68.24%), Query Frame = 3
Query:  183 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFLDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVT 692
            +IG+ G+AVMG+NLALNI  +G+ +SV+NR+  K +E +  A+  G   L  +   + FV S++ PR I+++VKAG+  D  I +L  Y++KGD IIDGGN ++++T RR + ++  G  ++G GVSGGEEGA  GPS+MPGG  EAY+ +  IL ++AA   D  PCVT
Sbjct:    5 QIGVVGMAVMGRNLALNIESRGYTVSVFNRSREKTEEVI--AENPGK-KLVPYYTVQEFVESLETPRRILLMVKAGSGTDSAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILKQIAAVAEDGEPCVT 171          
BLAST of FC931576 vs. ExPASy Swiss-Prot
Match: 6PGD_LACLA (6-phosphogluconate dehydrogenase, decarboxylating OS=Lactococcus lactis subsp. lactis GN=gnd PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.831e-38
Identity = 81/168 (48.21%), Postives = 118/168 (70.24%), Query Frame = 3
Query:  189 GLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFLDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSG-PCV 689
            G+ G+AVMG+NLALN+  +G+ +++YNRTTSK +E V +  ++ +L L   L  E FV S++KPR I+++V+AGA  D TIK+L   ++KGD +IDGGN  + +T RR   +A+ G+ ++G GVSGGE+GA  GPS+MPGG  EAY  +  I  ++AA+ P  G PCV
Sbjct:    7 GVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEE-VYKEHQDKNLVLTKTL--EEFVGSLEKPRRIMLMVQAGAATDATIKSLLPLLDKGDILIDGGNTHFPDTMRRNAELADSGINFIGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCV 171          
BLAST of FC931576 vs. ExPASy Swiss-Prot
Match: 6PGD_CUNEL (6-phosphogluconate dehydrogenase, decarboxylating OS=Cunninghamella elegans GN=6-PGD PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.310e-38
Identity = 80/167 (47.90%), Postives = 113/167 (67.66%), Query Frame = 3
Query:  186 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFLDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPC 686
            IGL GLAVMGQNL LN+ + GF +  YNRTTSKVD+ +    K  ++   G    E     +++PR +++LVKAG+ VD  I  L  ++E+GD IIDGGN  + ++ RR K +   G+L++G GVSGGEEGAR+GPSLMPGG+ +A+++I+ I   +AA+ PD   C
Sbjct:    8 IGLIGLAVMGQNLILNMNDHGFVVCAYNRTTSKVDDFLANEAKGTNV--VGAHSVEELCAKLKRPRKVMLLVKAGSAVDAFIDQLLPHLEEGDIIIDGGNSHFPDSIRRTKELEAKGILFVGSGVSGGEEGARYGPSLMPGGNSKAWEHIQPIFQAIAAKAPDGASC 172          
BLAST of FC931576 vs. ExPASy Swiss-Prot
Match: 6PGD_BACSU (6-phosphogluconate dehydrogenase, decarboxylating OS=Bacillus subtilis GN=gntZ PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.241e-38
Identity = 80/168 (47.62%), Postives = 110/168 (65.48%), Query Frame = 3
Query:  186 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFLDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCV 689
            IG+ GL VMG N+ALN+A KG  ++VYN T    D+ +++   +   P +   + E FV S++KPR I ++V AG PVD  I++L   +E+GD I+DGGN  YE+TERR   + E G+ YLG+G+SGGE GA  GPS+MPGG  + Y+    IL K+AAQV D   CV
Sbjct:    5 IGVIGLGVMGSNIALNMANKGENVAVYNYTRDLTDQLIQKLDGQSLSPYY---ELEDFVQSLEKPRKIFLMVTAGKPVDSVIQSLKPLLEEGDVIMDGGNSHYEDTERRYDELKEKGIGYLGVGISGGEVGALTGPSIMPGGDRDVYEKAAPILTKIAAQVGDDPCCV 169          
The following BLAST results are available for this feature:
BLAST of FC931576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
6PGD_SHIFL4.370e-3947.066-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_KLEPN5.707e-3947.066-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD1_YEAST5.707e-3949.406-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_STAES7.453e-3948.826-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_STAEQ7.453e-3948.826-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_HAEDU9.734e-3948.506-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD9_ECOLX1.271e-3846.476-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_LACLA4.831e-3848.216-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_CUNEL6.310e-3847.906-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_BACSU8.241e-3847.626-phosphogluconate dehydrogenase, decarboxylating ... [more]

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Properties
Property NameValue
Genbank descriptionC34106F08EF PostHarvP1 Citrus clementina cDNA clone C34106F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931576 ID=FC931576; Name=FC931576; organism=Citrus clementina; type=EST; length=709bp
GATTGACGTATTGTATTTTTAATCATTTATTATGTTTATAGAGTCTCTGC
TCTGCTAATCCCAGATCACATTTTGGGTTGATTTGTCTGAATTTTCCTTC
TCTTGTTTTTGCATCAGATTTTAGAAGAAGAAGAAGAAGAATTTTTTAAG
AGGAAGATATGGTTGAGGGCAAACAACTTACGAGAATAGGCCTTGCTGGT
CTGGCGGTCATGGGCCAAAATCTCGCCCTCAACATTGCTGAAAAAGGCTT
TCCCATTTCTGTTTATAACCGAACTACCTCCAAAGTTGATGAGACAGTTG
AAAGAGCTAAAAAGGAGGGAGATCTGCCTTTATTTGGTTTCCTTGATCCT
GAATCGTTTGTCAATTCAATCCAAAAACCTCGGGTGATAATCATGCTTGT
TAAAGCTGGTGCACCTGTTGACGAAACCATTAAGACCCTCTCCGCTTACA
TGGAGAAAGGTGATTGCATCATTGATGGGGGTAATGAGTGGTATGAGAAC
ACCGAGAGAAGAGAGAAAGCCATGGCTGAATTGGGTTTGCTCTACCTTGG
AATGGGAGTTTCAGGTGGTGAAGAGGGTGCAAGACATGGTCCTTCTTTGA
TGCCTGGAGGATCATTCGAGGCTTACAAGTATATTGAAGACATTCTTCTA
AAGGTCGCGGCTCAAGTTCCTGATAGCGGCCCCTGTGTGACTACATTAGC
AAGGTGGAT
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