FC931577

Overview
NameFC931577
Unique NameFC931577
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931577 vs. ExPASy Swiss-Prot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 38/130 (29.23%), Postives = 68/130 (52.31%), Query Frame = 1
Query:  211 FDPSDAFPLWE---FESDVLLSHLQSTGQSS-------VDWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYLSNDVFLEIRIPK 570
            +DP D FP          +  S  + T   +       +DW +T +A+V KA++PG+ K +V+V VE+G +++ISG+  ++++ +   W         F+RR  LPE+    + +A + N V L + +PK
Sbjct:   18 WDPFDGFPFGSGSRSSGSIFPSFPRGTSSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGV-LTVTVPK 146          
BLAST of FC931577 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.993e-11
Identity = 38/130 (29.23%), Postives = 68/130 (52.31%), Query Frame = 1
Query:  211 FDPSDAFPLWEFESDV----------LLSHLQSTGQSSVDWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYLSNDVFLEIRIPK 570
            +DP D FP     S              S   +   + +DW +T +A+V KA++PG+ K +V+V V++G I++ISG+  ++++ +   W         F+RR  LP++A   + +A + N V L + +PK
Sbjct:   18 WDPFDGFPFGSGGSSSGSIFPSFPRGASSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGV-LTVTVPK 146          
BLAST of FC931577 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.521e-11
Identity = 32/92 (34.78%), Postives = 57/92 (61.96%), Query Frame = 1
Query:  295 VDWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYLSNDVFLEIRIPK 570
            VDW +T +A+V KA+LPG+ K +V+V +E+ ++++ISG+   +++ +   W         F+RR  LPE+A   + +A + N V L + +PK
Sbjct:   53 VDWKETPEAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENGV-LTVTVPK 143          
BLAST of FC931577 vs. ExPASy Swiss-Prot
Match: HSP11_MEDSA (18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.521e-11
Identity = 31/92 (33.70%), Postives = 57/92 (61.96%), Query Frame = 1
Query:  295 VDWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYLSNDVFLEIRIPK 570
            +DW +T +A+V KA+LPG+ K +V+V +E+ ++++ISG+   +++ +   W         F+RR  LPE+A   + +A + N V L + +PK
Sbjct:   38 IDWKETPEAHVFKADLPGLKKEEVKVEIEDDRVLQISGERNVEKEDKNDQWHRVERSSGKFMRRFRLPENAKMDQVKAAMENGV-LTVTVPK 128          
BLAST of FC931577 vs. ExPASy Swiss-Prot
Match: HSP12_SOLPE (17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 32/92 (34.78%), Postives = 56/92 (60.87%), Query Frame = 1
Query:  295 VDWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYLSNDVFLEIRIPK 570
            +DW +T +A+V KA+LPG+ K +V+V VE  ++++ISG+   +++ +   W         F+RR  LPE+A   + +A + N V L + +PK
Sbjct:   49 IDWKETPEAHVFKADLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKMDQVKASMENGV-LTVTVPK 139          
The following BLAST results are available for this feature:
BLAST of FC931577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
HS181_ORYSJ3.823e-1129.2318.1 kDa class I heat shock protein OS=Oryza sativ... [more]
HS17A_ORYSJ4.993e-1129.2317.9 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP12_MEDSA6.521e-1134.7818.2 kDa class I heat shock protein OS=Medicago sa... [more]
HSP11_MEDSA6.521e-1133.7018.1 kDa class I heat shock protein (Fragment) OS=... [more]
HSP12_SOLPE8.517e-1134.7817.6 kDa class I heat shock protein OS=Solanum per... [more]

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Properties
Property NameValue
Genbank descriptionC34106F09EF PostHarvP1 Citrus clementina cDNA clone C34106F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931577 ID=FC931577; Name=FC931577; organism=Citrus clementina; type=EST; length=703bp
GAAGGAAAATTTTTGCAATTTTCGGTCTTCTAGTCTGGAATGACTAGTTG
CATAAAGCTTGAAGTTCATACAGATGATCGCACTCCGCATAAATGGATTG
TTGCATTAGGCGAAGACGTGTTCAGAAGATTTCTCTCCCAGGGAAATCCC
GCTGTGCATAAGGCATTTGGCGATGGCTCTCTGTTCAGTCCATTGTTGTT
CGGAAAATTCTTTGATCCATCTGATGCCTTTCCTCTCTGGGAATTTGAGT
CAGATGTTTTGTTATCTCATCTTCAGAGCACTGGCCAGAGTTCTGTTGAT
TGGCTTCAGACAGACCAAGCTTATGTGCTAAAAGCAGAACTGCCGGGAGT
TGGGAAAAACCAAGTGCAAGTCTCTGTCGAAAATGGGAAGATTGTGGAAA
TTTCTGGGCAGTGGAAGGAGCAGAGAGATCCGAGGGCAAAGGACTGGAGA
AGTGGCCATTGGTGGGAACATGGATTTGTTCGGAGGCTTGAGCTGCCGGA
AGATGCAGACTGGAGGAAAACAGAAGCGTATTTGAGTAACGACGTGTTTC
TGGAAATCAGAATTCCCAAGAATCCTTCAACTTGTGATATTTCCCACGGA
AATGGTGCCGCGACAAAAAATTCTGAAGCAATGTAAGTTTGAGGAGGGTG
ATACATTCTGCTACTTGAAAAACAAATCTGACAAAAAAAAAAAAAAAAAA
AAA
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