FC931588

Overview
NameFC931588
Unique NameFC931588
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931588_ssr25 microsatellite FC931588_ssr25:25..38. BLAST: Citrus ESTs to Prunus persica proteins V1
FC931588_ssr124 microsatellite FC931588_ssr124:124..138. BLAST: Citrus ESTs to Prunus persica proteins V1
FC931588_ssr185 microsatellite FC931588_ssr185:185..196. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10238 contig Ccv1_Contig10238:1..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL31_ARATH (Germin-like protein subfamily 3 member 1 OS=Arabidopsis thaliana GN=GLP1 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.279e-25
Identity = 60/141 (42.55%), Postives = 82/141 (58.16%), Query Frame = 1
Query:  208 LQDVCVADLTSPIKVNGFPC--KANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVI 624
            +QD CVA+L       G+PC    +    DF    L  P  T N   + VT A     PGLN LG+S AR+D AP G+ P HTHP A+E++FVL G +  GF ++AN +  +++K G+  VFP+GL+HFQ N G   AS +
Sbjct:   19 VQDFCVANLKRAETPAGYPCIRPIHVKATDFVFSGLGTPGNTTNIINAAVTPAFAAQFPGLNGLGLSTARLDLAPKGVIPMHTHPGASEVLFVLTGSITAGFVSSANAVYVQTLKPGQVMVFPQGLLHFQINAGKSSASAV 159          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL13_ARATH (Germin-like protein subfamily 1 member 3 OS=Arabidopsis thaliana GN=At3g04170 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.279e-25
Identity = 72/152 (47.37%), Postives = 90/152 (59.21%), Query Frame = 1
Query:  196 DPEMLQDVCVA-DLTSPIKVNGFPCKAN--FSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTAN---VLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGL 633
            DP  LQD CVA    + + VNG  CK     +  DFF+  L  P  TN   GS V  AN   IPGLNTLGV +ARID+APGG+ PPH HPRA+EI+ V++G+L VGF ++ +    L SK +  G+ FV P GLV F  N G   A  I  +
Sbjct:   26 DPSPLQDYCVAVPEKNGVFVNGEFCKDPKLVTSDDFFASGLNIPGNTNKRLGSFVNPAN---IPGLNTLGVGIARIDFAPGGLIPPHIHPRASEIILVIKGKLLVGFVSSNDYNYTLFSKILYPGDVFVHPIGLVQFHANIGKTNAVAIGAV 174          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL814_ORYSJ (Germin-like protein 8-14 OS=Oryza sativa subsp. japonica GN=GER5 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.671e-25
Identity = 60/138 (43.48%), Postives = 85/138 (61.59%), Query Frame = 1
Query:  205 MLQDVCVADLTSPIKVNGFPCKANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFT-TANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPA 615
            + QD CVADLT      G+PCKA+    DF    LA    T+N   + VT A V   PG+N LG+S AR+D A GG+ P HTHP A+E++FV +G +  GF T ++N + ++++  G+  VFP+GL+H+Q N G   A
Sbjct:   24 LTQDFCVADLTCSDTPAGYPCKASVGAGDFAYHGLAAAGNTSNLIKAAVTPAFVGQFPGVNGLGISAARLDIAVGGVVPLHTHPAASELLFVTQGTVAAGFITSSSNTVYTRTLYAGDIMVFPQGLLHYQYNAGQSAA 161          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: ABP20_PRUPE (Auxin-binding protein ABP20 OS=Prunus persica GN=ABP20 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.671e-25
Identity = 61/142 (42.96%), Postives = 84/142 (59.15%), Query Frame = 1
Query:  208 LQDVCVADLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIA 627
            +QD CVADL +P    GF CK  A+    DF    L     T+N   + VT A V   PG+N LG+S+AR+D A GG+ P HTHP A+E++ V +G +  GF  + N    ++++KG+  VFP+GL+HFQ N G  PA   A
Sbjct:   25 VQDFCVADLAAPEGPAGFSCKKPASVKVNDFVFSGLGIAGNTSNIIKAAVTPAFVAQFPGVNGLGISIARLDLAVGGVVPFHTHPGASEVLIVAQGTICAGFVASDNTPYLQTLEKGDIMVFPQGLLHFQVNGGEAPALAFA 166          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: AB19A_PRUPE (Auxin-binding protein ABP19a OS=Prunus persica GN=ABP19A PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.671e-25
Identity = 60/138 (43.48%), Postives = 81/138 (58.70%), Query Frame = 1
Query:  208 LQDVCVADLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPA 615
            +QD CVAD  +P    G+ CK  A  +  DF    L     T N   + VT A     PG+N LG+SLAR+D  PGG+ P HTHP A+E++ V++G +  GF  + N    K++KKG+  VFP+GL+HFQ N G  PA
Sbjct:   20 VQDFCVADYKAPDGPAGYSCKKPAKVTINDFVYSGLGIAGNTTNIIKAAVTPAFAAQFPGVNGLGISLARLDLGPGGVIPFHTHPGASEVLLVVQGTIIAGFVASDNTPYLKTLKKGDIMVFPQGLLHFQVNGGGTPA 157          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL33_ARATH (Germin-like protein subfamily 3 member 3 OS=Arabidopsis thaliana GN=GER3 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.182e-25
Identity = 59/138 (42.75%), Postives = 85/138 (61.59%), Query Frame = 1
Query:  208 LQDVCVADLTSPIKVNGFPCKA--NFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPA 615
            +QD CVAD   P   +G+ CK     +E DF    L     T+N   + VT A      G+N LGVSLAR+D A GG+ P HTHP A+E++ V++G +  GF ++AN +  K++ +G++ VFP+GL+HFQ N+G  PA
Sbjct:   22 VQDFCVADPKGPQSPSGYSCKNPDQVTENDFAFTGLGTAGNTSNIIKAAVTPAFAPAYAGINGLGVSLARLDLAGGGVIPLHTHPGASEVLVVIQGTICAGFISSANKVYLKTLNRGDSMVFPQGLLHFQLNSGKGPA 159          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GLP1_BRANA (Germin-like protein 1 OS=Brassica napus GN=GER1 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.850e-25
Identity = 59/146 (40.41%), Postives = 85/146 (58.22%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPC-KANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVI 624
            A   + +QD CVA+L       G+PC +    +   F   L  P  T N   + VT   V   P LN LG+S AR+D AP G+ P HTHP A+E++FVL+G +  GF ++AN +  +++K G+  VFP+GL+HFQ N G  PA+ +
Sbjct:   13 ALSNDSVQDFCVANLKRAETPAGYPCIRPIHVKASDFVFSLGTPGNTTNIISAAVTPGFVAQFPALNGLGISTARLDLAPKGVIPMHTHPGASEVLFVLDGSITAGFISSANSVYVQTLKPGQVMVFPQGLLHFQINAGKTPAAAL 158          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL11_ARATH (Germin-like protein subfamily 1 member 1 OS=Arabidopsis thaliana GN=GLP7 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.133e-24
Identity = 61/154 (39.61%), Postives = 91/154 (59.09%), Query Frame = 1
Query:  193 ADPEMLQDVCVADLTSP---IKVNGFPCK--ANFSEMDFFSDKLAKPAATNNT-FGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASV-IAGL 633
            +DP+ LQD CV+   S    I +NG  CK     S  DF +  L++P  T    F   VT      +PGLNT+G+++AR+D+   G+ PPH HPRA+E+   L+G L VGF  T+  + ++ +  GE FVFP+GL+HF  N   V +++ ++GL
Sbjct:   18 SDPDPLQDYCVSPPPSSHQQIFLNGKLCKDPTQASVSDFSTSALSRPGNTKTKPFMINVTVTTTANLPGLNTVGLTMARLDFGGSGVVPPHVHPRASEVTVCLDGVLLVGFVDTSGRVFTQELHPGETFVFPKGLIHFLYNIDTVSSALAVSGL 171          

HSP 2 Score: 24.6386 bits (52), Expect = 1.133e-24
Identity = 11/21 (52.38%), Postives = 15/21 (71.43%), Query Frame = 3
Query:  630 LNSQLQGTQNIALTLFASTPP 692
            L+SQ  GTQ ++L+ F S PP
Sbjct:  171 LSSQNPGTQIVSLSSFISKPP 191          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL813_ORYSJ (Germin-like protein 8-13 OS=Oryza sativa subsp. japonica GN=Os08g0459700 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.413e-24
Identity = 59/150 (39.33%), Postives = 90/150 (60.00%), Query Frame = 1
Query:  205 MLQDVCVADLTSPIKV-NGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTA-NVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGLIAS 642
            + QD CVA+L       +G+ C+  A  +  DF+S  LA+P      F +++ +A VQ  P +N LG+S +R+D  PGG+ P HTHP  +E+++VL+G L  GF +++ N +  K + KG  FVFP+GL+HFQ N G+  A   A   +S
Sbjct:   27 LTQDFCVANLPLGADTPSGYQCRPAATVTAADFYSGALARPGILIRPFNTSLASAFVQQYPAVNGLGISASRVDILPGGVVPLHTHPAGSELLYVLDGALVAGFISSSDNKVYYKEVSKGGMFVFPQGLLHFQYNTGDTTAVAFAAYSSS 176          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL31_ORYSJ (Germin-like protein 3-1 OS=Oryza sativa subsp. japonica GN=Os03g0179000 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.668e-23
Identity = 64/157 (40.76%), Postives = 92/157 (58.60%), Query Frame = 1
Query:  196 DPEMLQDVCVADLTSP-----IKVNGFPC-KANFSEMDFFS----DKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKN-NGNVPASVIAGL 633
            DP++L D CVAD  +        +NG  C     +  D F+     +   PAAT   F +T+T+    ++PG N  G+++ARID APGG+ PPH+HPRA+E   VL G + VGF  T+  L ++ ++ GE FVFPR +VHF  N +   PA V++GL
Sbjct:   23 DPDLLFDYCVADTAAATAAGAFHLNGLACIDPALARADHFATSALSRATNPAATLYGFNATLTSP-AASLPGANAQGLAMARIDLAPGGMAPPHSHPRASEAALVLSGSVLVGFADTSYRLYTQLLRAGEAFVFPRAMVHFLYNMDTAAPAVVLSGL 178          
The following BLAST results are available for this feature:
BLAST of FC931588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GL31_ARATH1.279e-2542.55Germin-like protein subfamily 3 member 1 OS=Arabid... [more]
GL13_ARATH1.279e-2547.37Germin-like protein subfamily 1 member 3 OS=Arabid... [more]
GL814_ORYSJ1.671e-2543.48Germin-like protein 8-14 OS=Oryza sativa subsp. ja... [more]
ABP20_PRUPE1.671e-2542.96Auxin-binding protein ABP20 OS=Prunus persica GN=A... [more]
AB19A_PRUPE1.671e-2543.48Auxin-binding protein ABP19a OS=Prunus persica GN=... [more]
GL33_ARATH2.182e-2542.75Germin-like protein subfamily 3 member 3 OS=Arabid... [more]
GLP1_BRANA2.850e-2540.41Germin-like protein 1 OS=Brassica napus GN=GER1 PE... [more]
GL11_ARATH1.133e-2439.61Germin-like protein subfamily 1 member 1 OS=Arabid... [more]
GL813_ORYSJ2.413e-2439.33Germin-like protein 8-13 OS=Oryza sativa subsp. ja... [more]
GL31_ORYSJ2.668e-2340.76Germin-like protein 3-1 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionC34106G09EF PostHarvP1 Citrus clementina cDNA clone C34106G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931588 ID=FC931588; Name=FC931588; organism=Citrus clementina; type=EST; length=723bp
GGTCAACAAATCAACACCAACTTTTCTCTCTCTCTCTCTTTCTCCATCTC
TATCTTTTCTTCTTTCTTTATCTTCGCCTGCAGCAATAACAAGATCATAA
TTGAACTTACTTTTGTAACCATGGCTGCTGCTGCTGCTGGTGCTTTGACA
CTTTTTGTTGTCACTGTTGCTGTGATCTTGAACACTGCTGCTGCTGATCC
CGAAATGCTTCAAGATGTTTGTGTGGCAGACCTCACTTCCCCTATTAAAG
TCAATGGGTTCCCCTGCAAAGCAAACTTTTCAGAGATGGACTTTTTCTCA
GACAAATTAGCAAAGCCAGCAGCCACAAACAACACGTTTGGTTCAACAGT
AACAGCAGCCAATGTCCAAACAATCCCAGGCCTAAATACTCTTGGTGTCT
CACTCGCACGCATTGACTATGCCCCCGGCGGCATAAACCCGCCGCACACG
CACCCCCGTGCCACCGAGATCGTCTTTGTCCTCGAGGGTCAACTCGACGT
AGGCTTCTTCACTACTGCCAACGTTTTGGTATCAAAATCCATCAAAAAGG
GTGAAAACTTCGTGTTTCCAAGAGGGTTGGTGCATTTCCAGAAGAACAAT
GGAAATGTCCCTGCTTCTGTTATTGCTGGCTTAATAGCCAGCTGCAGGGG
ACTCAGAACATTGCTCTTACATTGTTTGCATCTACGCCGCCAGTGGCGGA
TATGTATGACTAGACTTTCAGAT
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