FC931592

Overview
NameFC931592
Unique NameFC931592
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length467
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15533 contig Ccv1_Contig15533:409..875. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931592 vs. ExPASy Swiss-Prot
Match: HSP70_DAUCA (Heat shock 70 kDa protein OS=Daucus carota GN=HSP70 PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 1.298e-58
Identity = 118/159 (74.21%), Postives = 125/159 (78.62%), Query Frame = 2
Query:    2 RDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDN----NLLGKFELSGIPPAPRGVPQITV 466
            RD+K+DK+ VH+VVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDE           ILSGEGNE+  D             ETAGGVMTVLIPRNTTIPTKKEQ+FSTYSDNQPGVLIQVYEGER RTRDN     LLGKFEL+GIPPAPRGVPQI V
Sbjct:  327 RDSKIDKAQVHEVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNER-SDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTRDNKLLGKLLGKFELTGIPPAPRGVPQINV 484          
BLAST of FC931592 vs. ExPASy Swiss-Prot
Match: HSP70_ONCMY (Heat shock cognate 70 kDa protein OS=Oncorhynchus mykiss GN=hsc71 PE=2 SV=2)

HSP 1 Score: 218.394 bits (555), Expect = 1.215e-56
Identity = 111/155 (71.61%), Postives = 121/155 (78.06%), Query Frame = 2
Query:    2 RDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 466
            RDAKMDK+ VHD+VLVGGSTRIPK+Q+LLQDFFNGKEL KSINPDE           ILSG+ +E VQD             ETAGGVMTVLI RNTTIPTK+ Q F+TYSDNQPGVLIQVYEGER  T+DNNLLGKFEL+GIPPAPRGVPQI V
Sbjct:  322 RDAKMDKAQVHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEV 476          
BLAST of FC931592 vs. ExPASy Swiss-Prot
Match: HSP7C_SAGOE (Heat shock cognate 71 kDa protein OS=Saguinus oedipus GN=HSPA8 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 1.587e-56
Identity = 110/155 (70.97%), Postives = 121/155 (78.06%), Query Frame = 2
Query:    2 RDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 466
            RDAK+DKS +HD+VLVGGSTRIPK+Q+LLQDFFNGKEL KSINPDE           ILSG+ +E VQD             ETAGGVMTVLI RNTTIPTK+ Q F+TYSDNQPGVLIQVYEGER  T+DNNLLGKFEL+GIPPAPRGVPQI V
Sbjct:  322 RDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEV 476          
BLAST of FC931592 vs. ExPASy Swiss-Prot
Match: HSP7C_RAT (Heat shock cognate 71 kDa protein OS=Rattus norvegicus GN=Hspa8 PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 1.587e-56
Identity = 110/155 (70.97%), Postives = 121/155 (78.06%), Query Frame = 2
Query:    2 RDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 466
            RDAK+DKS +HD+VLVGGSTRIPK+Q+LLQDFFNGKEL KSINPDE           ILSG+ +E VQD             ETAGGVMTVLI RNTTIPTK+ Q F+TYSDNQPGVLIQVYEGER  T+DNNLLGKFEL+GIPPAPRGVPQI V
Sbjct:  322 RDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEV 476          
BLAST of FC931592 vs. ExPASy Swiss-Prot
Match: HSP7C_PONAB (Heat shock cognate 71 kDa protein OS=Pongo abelii GN=HSPA8 PE=2 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 1.587e-56
Identity = 110/155 (70.97%), Postives = 121/155 (78.06%), Query Frame = 2
Query:    2 RDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 466
            RDAK+DKS +HD+VLVGGSTRIPK+Q+LLQDFFNGKEL KSINPDE           ILSG+ +E VQD             ETAGGVMTVLI RNTTIPTK+ Q F+TYSDNQPGVLIQVYEGER  T+DNNLLGKFEL+GIPPAPRGVPQI V
Sbjct:  322 RDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEV 476          
BLAST of FC931592 vs. ExPASy Swiss-Prot
Match: HSP7C_MOUSE (Heat shock cognate 71 kDa protein OS=Mus musculus GN=Hspa8 PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 1.587e-56
Identity = 110/155 (70.97%), Postives = 121/155 (78.06%), Query Frame = 2
Query:    2 RDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 466
            RDAK+DKS +HD+VLVGGSTRIPK+Q+LLQDFFNGKEL KSINPDE           ILSG+ +E VQD             ETAGGVMTVLI RNTTIPTK+ Q F+TYSDNQPGVLIQVYEGER  T+DNNLLGKFEL+GIPPAPRGVPQI V
Sbjct:  322 RDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEV 476          
BLAST of FC931592 vs. ExPASy Swiss-Prot
Match: HSP7C_HUMAN (Heat shock cognate 71 kDa protein OS=Homo sapiens GN=HSPA8 PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 1.587e-56
Identity = 110/155 (70.97%), Postives = 121/155 (78.06%), Query Frame = 2
Query:    2 RDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 466
            RDAK+DKS +HD+VLVGGSTRIPK+Q+LLQDFFNGKEL KSINPDE           ILSG+ +E VQD             ETAGGVMTVLI RNTTIPTK+ Q F+TYSDNQPGVLIQVYEGER  T+DNNLLGKFEL+GIPPAPRGVPQI V
Sbjct:  322 RDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEV 476          
BLAST of FC931592 vs. ExPASy Swiss-Prot
Match: HSP7C_HORSE (Heat shock cognate 71 kDa protein OS=Equus caballus GN=HSPA8 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 1.587e-56
Identity = 110/155 (70.97%), Postives = 121/155 (78.06%), Query Frame = 2
Query:    2 RDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 466
            RDAK+DKS +HD+VLVGGSTRIPK+Q+LLQDFFNGKEL KSINPDE           ILSG+ +E VQD             ETAGGVMTVLI RNTTIPTK+ Q F+TYSDNQPGVLIQVYEGER  T+DNNLLGKFEL+GIPPAPRGVPQI V
Sbjct:  322 RDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEV 476          
BLAST of FC931592 vs. ExPASy Swiss-Prot
Match: HSP7C_CRIGR (Heat shock cognate 71 kDa protein OS=Cricetulus griseus GN=HSPA8 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 1.587e-56
Identity = 110/155 (70.97%), Postives = 121/155 (78.06%), Query Frame = 2
Query:    2 RDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 466
            RDAK+DKS +HD+VLVGGSTRIPK+Q+LLQDFFNGKEL KSINPDE           ILSG+ +E VQD             ETAGGVMTVLI RNTTIPTK+ Q F+TYSDNQPGVLIQVYEGER  T+DNNLLGKFEL+GIPPAPRGVPQI V
Sbjct:  322 RDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEV 476          
BLAST of FC931592 vs. ExPASy Swiss-Prot
Match: HSP7C_CHICK (Heat shock cognate 71 kDa protein OS=Gallus gallus GN=HSPA8 PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 1.587e-56
Identity = 110/155 (70.97%), Postives = 121/155 (78.06%), Query Frame = 2
Query:    2 RDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 466
            RDAK+DKS +HD+VLVGGSTRIPK+Q+LLQDFFNGKEL KSINPDE           ILSG+ +E VQD             ETAGGVMTVLI RNTTIPTK+ Q F+TYSDNQPGVLIQVYEGER  T+DNNLLGKFEL+GIPPAPRGVPQI V
Sbjct:  322 RDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEV 476          
The following BLAST results are available for this feature:
BLAST of FC931592 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP70_DAUCA1.298e-5874.21Heat shock 70 kDa protein OS=Daucus carota GN=HSP7... [more]
HSP70_ONCMY1.215e-5671.61Heat shock cognate 70 kDa protein OS=Oncorhynchus ... [more]
HSP7C_SAGOE1.587e-5670.97Heat shock cognate 71 kDa protein OS=Saguinus oedi... [more]
HSP7C_RAT1.587e-5670.97Heat shock cognate 71 kDa protein OS=Rattus norveg... [more]
HSP7C_PONAB1.587e-5670.97Heat shock cognate 71 kDa protein OS=Pongo abelii ... [more]
HSP7C_MOUSE1.587e-5670.97Heat shock cognate 71 kDa protein OS=Mus musculus ... [more]
HSP7C_HUMAN1.587e-5670.97Heat shock cognate 71 kDa protein OS=Homo sapiens ... [more]
HSP7C_HORSE1.587e-5670.97Heat shock cognate 71 kDa protein OS=Equus caballu... [more]
HSP7C_CRIGR1.587e-5670.97Heat shock cognate 71 kDa protein OS=Cricetulus gr... [more]
HSP7C_CHICK1.587e-5670.97Heat shock cognate 71 kDa protein OS=Gallus gallus... [more]

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Properties
Property NameValue
Genbank descriptionC34106H02EF PostHarvP1 Citrus clementina cDNA clone C34106H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931592 ID=FC931592; Name=FC931592; organism=Citrus clementina; type=EST; length=467bp
GAGGGATGCCAAGATGGACAAGAGCTCAGTCCATGATGTTGTTCTTGTCG
GAGGATCTACTAGGATTCCCAAAGTCCAGCAGCTTTTGCAAGATTTCTTT
AATGGGAAGGAGCTTTGCAAGAGCATCAACCCCGATGAGGCTGTTGCCTA
TGGTGCTGCTGTGCAAGCTGCTATCTTGAGTGGTGAGGGTAATGAGAAGG
TGCAGGATCTTCTGCTATTGGATGTCACACCTCTCTCCCTTGGTTTGGAG
ACTGCTGGTGGTGTCATGACTGTGTTGATTCCAAGGAACACAACCATTCC
CACCAAGAAGGAGCAGGTCTTCTCAACTTACTCTGACAACCAACCTGGTG
TGTTGATCCAAGTCTATGAAGGCGAAAGGACAAGAACCAGGGACAATAAC
TTGTTGGGTAAATTTGAGCTCTCTGGTATTCCCCCAGCTCCTAGGGGTGT
TCCTCAAATCACTGTGT
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