FC931596
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC931596 vs. ExPASy Swiss-Prot
Match: MADS8_ORYSJ (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1) HSP 1 Score: 270.011 bits (689), Expect = 8.222e-72 Identity = 150/231 (64.94%), Postives = 174/231 (75.32%), Query Frame = 2 Query: 23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSARE-ALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGY------GLKPAQPQ-GDTFFHALE--CEPTLXIGYQP 685 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS SM +TLERYQK +YG P+ + +E L SS+ EYLKLKAR E LQR+QRNLLGE+LG L KELE LE+QLD SL+ IRSTRTQ+MLD LT+LQ +EQ+L EANK L+++L E Q++ A GY ++ P G+ FFH+LE EPTL IG+ P Sbjct: 1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGQSMTRTLERYQKFSYGGPDTAIQNKENELVQSSRNEYLKLKARVENLQRTQRNLLGEDLGTLGIKELEQLEKQLDSSLRHIRSTRTQHMLDQLTDLQRREQMLCEANKCLRRKLEESNQLHGQVWEHGATLLGYERQSPHAVQQVPPHGGNGFFHSLEAAAEPTLQIGFTP 231
BLAST of FC931596 vs. ExPASy Swiss-Prot
Match: CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1) HSP 1 Score: 249.595 bits (636), Expect = 1.150e-65 Identity = 138/221 (62.44%), Postives = 164/221 (74.21%), Query Frame = 2 Query: 23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFH--ALECEPTLXIGY 679 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALI+FSNRGKLYEFCS+S M KTLERYQ+C+YG+ E + ++E SS QEYLKLKA+ + LQRS RNLLGE+LG L++KELE LE QLD SL+QIRS +TQ+MLD L +LQ KE++L E+N+ LK +L E + P+ + + GD FF L C L IGY Sbjct: 1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSCMNKTLERYQRCSYGSLETSQPSKET--ESSYQEYLKLKAKVDVLQRSHRNLLGEDLGELSTKELEQLEHQLDKSLRQIRSIKTQHMLDQLADLQKKEEMLFESNRALKTKLEE----SCASFRPNWD--------VRQPGDGFFEPLPLPCNNNLQIGY 207
BLAST of FC931596 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSJ (MADS-box transcription factor 5 OS=Oryza sativa subsp. japonica GN=MADS5 PE=1 SV=1) HSP 1 Score: 241.891 bits (616), Expect = 2.398e-63 Identity = 131/220 (59.55%), Postives = 161/220 (73.18%), Query Frame = 2 Query: 23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLXIGYQ 682 MGRG+VELKRIENKI+RQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS RG+L+EF +SS M KTLERY+ CNY SA ELS+ QEYLKLK R E LQ +QRNLLGE+L PL+ KELE LE Q+++SL IRS++ Q +LD + EL+ KEQ L +ANK LK+++ E N L + S +D G ++ + HA+ C+P+L IGYQ Sbjct: 1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTSSCMYKTLERYRSCNYNLNSCEASAALETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKRKIQETSGENMLHI--SCQDVGPSGHASEANQEFLHHAI-CDPSLHIGYQ 217
BLAST of FC931596 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSI (MADS-box transcription factor 5 OS=Oryza sativa subsp. indica GN=MADS5 PE=2 SV=1) HSP 1 Score: 241.891 bits (616), Expect = 2.398e-63 Identity = 131/220 (59.55%), Postives = 161/220 (73.18%), Query Frame = 2 Query: 23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLXIGYQ 682 MGRG+VELKRIENKI+RQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS RG+L+EF +SS M KTLERY+ CNY SA ELS+ QEYLKLK R E LQ +QRNLLGE+L PL+ KELE LE Q+++SL IRS++ Q +LD + EL+ KEQ L +ANK LK+++ E N L + S +D G ++ + HA+ C+P+L IGYQ Sbjct: 1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTSSCMYKTLERYRSCNYNLNSCEASAALETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKRKIQETSGENMLHI--SCQDVGPSGHASEANQEFLHHAI-CDPSLHIGYQ 217
BLAST of FC931596 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSJ (MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica GN=MADS1 PE=1 SV=1) HSP 1 Score: 223.787 bits (569), Expect = 6.758e-58 Identity = 125/225 (55.56%), Postives = 155/225 (68.89%), Query Frame = 2 Query: 23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLN------PSAEDCGYGLKPAQPQGDTFFHALECEPTLXIGY 679 MGRG+VELKRIENKI+RQVTFAKRRNGLLKKAYELS+LCDAEVALIIFS RG+L+EF SSS M KTLERY+ CNY + + E + QEYLKLK R E LQ +QRN+LGE+LGPL+ KELE LE Q+++SLKQIRS + Q +LD L +L+ KEQ L + NK L+++L E N L ++ S +P QG H + + +L IGY Sbjct: 1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSSSCMYKTLERYRSCNYNSQDAAAPENEI----NYQEYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRKKLQETSAENVLHMSWQDGGGHSGSSTVLADQPHHHQGLLHPHPDQGDHSLQIGY 221
BLAST of FC931596 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSI (MADS-box transcription factor 1 OS=Oryza sativa subsp. indica GN=MADS1 PE=2 SV=2) HSP 1 Score: 223.787 bits (569), Expect = 6.758e-58 Identity = 125/225 (55.56%), Postives = 155/225 (68.89%), Query Frame = 2 Query: 23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLN------PSAEDCGYGLKPAQPQGDTFFHALECEPTLXIGY 679 MGRG+VELKRIENKI+RQVTFAKRRNGLLKKAYELS+LCDAEVALIIFS RG+L+EF SSS M KTLERY+ CNY + + E + QEYLKLK R E LQ +QRN+LGE+LGPL+ KELE LE Q+++SLKQIRS + Q +LD L +L+ KEQ L + NK L+++L E N L ++ S +P QG H + + +L IGY Sbjct: 1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSSSCMYKTLERYRSCNYNSQDAAAPENEI----NYQEYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRKKLQETSAENVLHMSWQDGGGHSGSSTVLADQPHHHQGLLHPHPDQGDHSLQIGY 221
BLAST of FC931596 vs. ExPASy Swiss-Prot
Match: AGL3_ARATH (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=1 SV=2) HSP 1 Score: 219.935 bits (559), Expect = 9.758e-57 Identity = 113/174 (64.94%), Postives = 144/174 (82.76%), Query Frame = 2 Query: 23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS-SSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRL 541 MGRG+VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAE+AL+IFSNRGKLYEFCSS S M +T+++Y+K +Y +PN SA++ + Q+YLKLK+R E LQ SQR+LLGEEL ++ ELE LERQ+D SL+QIRST+ + MLD L++L+ KE++L E N+ L+++L Sbjct: 1 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSSPSGMARTVDKYRKHSYATMDPNQSAKDLQD--KYQDYLKLKSRVEILQHSQRHLLGEELSEMDVNELEHLERQVDASLRQIRSTKARSMLDQLSDLKTKEEMLLETNRDLRRKL 172
BLAST of FC931596 vs. ExPASy Swiss-Prot
Match: MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1) HSP 1 Score: 217.624 bits (553), Expect = 4.843e-56 Identity = 127/222 (57.21%), Postives = 156/222 (70.27%), Query Frame = 2 Query: 23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRL-MEGYQVN--TLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLXIGY 679 MGRGRVELKRIENKINRQVTF+KRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEF S+ + KTLERYQ C Y A + N + E S E KLKA++EALQR+QR+LLGE+LGPL+ KEL+ LE+QL+ +L Q R +TQ M++ + EL+ KE+ L E N+ LK +L +EG N +Q A+ A Q A++ EPTL IGY Sbjct: 1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF-GSAGITKTLERYQHCCYNAQDSNNALSET--QSWYHEMSKLKAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERQLGEINRQLKHKLEVEGSTSNYRAMQQASWAQGAVVENGAAYVQPPPHSAAMDSEPTLQIGY 219
BLAST of FC931596 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2) HSP 1 Score: 212.616 bits (540), Expect = 1.558e-54 Identity = 122/227 (53.74%), Postives = 153/227 (67.40%), Query Frame = 2 Query: 23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAED--------CGYGLKPAQPQGDTFFHALECEPTLXIGY 679 MGRGRVELKRIENKINRQVTF+KRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEF S+ + KTLE+Y C Y A N + S QE +LK + E LQRSQR++LGE+LGPL+ KEL+ LE+QL+ SL Q R +TQ M++ + +L+ KE+ L E NK LK +L + ++ + +D G + AQP D ++CEPTL IGY Sbjct: 1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF-GSAGINKTLEKYNSCCYNAQGSNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQLKNKLEA--EADSSNCRSAIQDSWVHGTVVSGGRVLNAQPPPD-----IDCEPTLQIGY 219
BLAST of FC931596 vs. ExPASy Swiss-Prot
Match: MAD34_ORYSJ (MADS-box transcription factor 34 OS=Oryza sativa subsp. japonica GN=MADS34 PE=2 SV=2) HSP 1 Score: 209.92 bits (533), Expect = 1.010e-53 Identity = 116/216 (53.70%), Postives = 151/216 (69.91%), Query Frame = 2 Query: 23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYG-------LKPAQPQGDTFFHAL 649 MGRG+V L+RIENKI+RQVTFAKRRNGLLKKAYELS+LCDAEVAL++FS+ G+LY+F SSS+MLKTLERYQ+ Y + + + ++ ++ QEY+ LKA E LQ+SQRNLLGE+L PL + ELE LE Q+ +LKQIRS +TQ +LD L +L+ KEQ+L +AN+ LK++L E P +C G PQ + FF AL Sbjct: 1 MGRGKVVLQRIENKISRQVTFAKRRNGLLKKAYELSILCDAEVALVLFSHAGRLYQFSSSSNMLKTLERYQRYIYASQDAAAPTSDEMQ-NNYQEYVNLKAHVEILQQSQRNLLGEDLAPLATNELEQLESQVVRTLKQIRSRKTQVLLDELCDLKRKEQMLQDANRVLKRKLDEIDVEAAPPQPPWNGNCSNGHGGGGGVFSSEPPQPEHFFQAL 215 The following BLAST results are available for this feature:
BLAST of FC931596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 118
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC931596 ID=FC931596; Name=FC931596; organism=Citrus clementina; type=EST; length=685bpback to top |