FC931602

Overview
NameFC931602
Unique NameFC931602
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931602_ssr431 microsatellite FC931602_ssr431:431..442. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10970 contig Ccv1_Contig10970:773..1468. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC931602 vs. ExPASy Swiss-Prot
Match: HSP82_MAIZE (Heat shock protein 82 OS=Zea mays GN=HSP82 PE=3 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 1.755e-77
Identity = 147/212 (69.34%), Postives = 163/212 (76.89%), Query Frame = 1 
Query:    1 KNLVKKCLELFQEIAENKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT--XXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDTA 630
            KNLVKKC+E+F EIAENK+DY KFY++FSKN+KLGIHEDS N+ KLA+LLRYHSTKSGDE TSLKDYVTRMKEGQ DIYYITGES+KAVENSPFLE+LKKKGYEVL+MVDAIDEYAVGQLKE++GKKLVSAT                            CKVIKD+LG               PCCLVTGEYGWTANMERIMKAQALRD++
Sbjct:  400 KNLVKKCIEMFFEIAENKDDYAKFYDAFSKNIKLGIHEDSQNRAKLADLLRYHSTKSGDETTSLKDYVTRMKEGQKDIYYITGESRKAVENSPFLERLKKKGYEVLFMVDAIDEYAVGQLKEYDGKKLVSATKEGLKLDDEDDEEAKKRREERKKRFEELCKVIKDILGDRVEKVVVSDRIVDSPCCLVTGEYGWTANMERIMKAQALRDSS 611
[Close]
BLAST of FC931602 vs. ExPASy Swiss-Prot
Match: HSC90_DICDI (Heat shock cognate 90 kDa protein OS=Dictyostelium discoideum GN=hspD PE=1 SV=2)

HSP 1 Score: 256.529 bits (654), Expect = 9.653e-68
Identity = 131/210 (62.38%), Postives = 149/210 (70.95%), Query Frame = 1 
Query:    1 KNLVKKCLELFQEIAENKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDTA 630
            KNLVKKC+ELF EIAEN EDY KFYE+FSKNLKLG+HEDS N+ K A+LLRY ++KSGDEL +LK+YV RMKEGQN+IYYITGESKKAVENSPF+E LKKK  EV+YM D IDEYAV QLKE++GKKLVS T                           K +KDVLG               PC LVT EYGW+ANMERIMKAQALRD++
Sbjct:  382 KNLVKKCIELFNEIAENSEDYKKFYEAFSKNLKLGVHEDSQNREKFADLLRYQTSKSGDELVTLKEYVGRMKEGQNEIYYITGESKKAVENSPFIEGLKKKNLEVIYMCDPIDEYAVQQLKEYDGKKLVSITKEGLKLDETEDEKKKAEQDKAANEELLKQVKDVLGDKVEKVVLSTRLANSPCVLVTSEYGWSANMERIMKAQALRDSS 591
[Close]
BLAST of FC931602 vs. ExPASy Swiss-Prot
Match: HS90B_RAT (Heat shock protein HSP 90-beta OS=Rattus norvegicus GN=Hsp90ab1 PE=1 SV=4)

HSP 1 Score: 244.588 bits (623), Expect = 3.796e-64
Identity = 119/210 (56.67%), Postives = 149/210 (70.95%), Query Frame = 1 
Query:    1 KNLVKKCLELFQEIAENKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDTA 630
            KN+VKKCLELF E+AE+KE+Y KFYE+FSKNLKLGIHEDSTN+ +L+ELLRYH+++SGDE+TSL +YV+RMKE Q  IYYITGESK+ V NS F+E+++K+G+EV+YM + IDEY V QLKEF+GK LVS T                          CK++K++L                PCC+VT  YGWTANMERIMKAQALRD +
Sbjct:  406 KNIVKKCLELFSELAEDKENYKKFYEAFSKNLKLGIHEDSTNRRRLSELLRYHTSQSGDEMTSLSEYVSRMKETQKSIYYITGESKEQVANSAFVERVRKRGFEVVYMTEPIDEYCVQQLKEFDGKSLVSVTKEGLELPEDEEEKKKMEESKAKFENLCKLMKEILDKKVEKVTISNRLVSSPCCIVTSTYGWTANMERIMKAQALRDNS 615
[Close]
BLAST of FC931602 vs. ExPASy Swiss-Prot
Match: HS90B_PONAB (Heat shock protein HSP 90-beta OS=Pongo abelii GN=HSP90AB1 PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 3.796e-64
Identity = 119/210 (56.67%), Postives = 149/210 (70.95%), Query Frame = 1 
Query:    1 KNLVKKCLELFQEIAENKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDTA 630
            KN+VKKCLELF E+AE+KE+Y KFYE+FSKNLKLGIHEDSTN+ +L+ELLRYH+++SGDE+TSL +YV+RMKE Q  IYYITGESK+ V NS F+E+++K+G+EV+YM + IDEY V QLKEF+GK LVS T                          CK++K++L                PCC+VT  YGWTANMERIMKAQALRD +
Sbjct:  406 KNIVKKCLELFSELAEDKENYKKFYEAFSKNLKLGIHEDSTNRRRLSELLRYHTSQSGDEMTSLSEYVSRMKETQKSIYYITGESKEQVANSAFVERVRKRGFEVVYMTEPIDEYCVQQLKEFDGKSLVSVTKEGLELPEDEEEKKKMEESKAKFENLCKLMKEILDKKVEEVTISNRLVSSPCCIVTSTYGWTANMERIMKAQALRDNS 615
[Close]
BLAST of FC931602 vs. ExPASy Swiss-Prot
Match: HS90B_MACFA (Heat shock protein HSP 90-beta OS=Macaca fascicularis GN=Hsp90ab1 PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 3.796e-64
Identity = 119/210 (56.67%), Postives = 149/210 (70.95%), Query Frame = 1 
Query:    1 KNLVKKCLELFQEIAENKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDTA 630
            KN+VKKCLELF E+AE+KE+Y KFYE+FSKNLKLGIHEDSTN+ +L+ELLRYH+++SGDE+TSL +YV+RMKE Q  IYYITGESK+ V NS F+E+++K+G+EV+YM + IDEY V QLKEF+GK LVS T                          CK++K++L                PCC+VT  YGWTANMERIMKAQALRD +
Sbjct:  406 KNIVKKCLELFSELAEDKENYKKFYEAFSKNLKLGIHEDSTNRRRLSELLRYHTSQSGDEMTSLSEYVSRMKETQKSIYYITGESKEQVANSAFVERVRKRGFEVVYMTEPIDEYCVQQLKEFDGKSLVSVTKEGLELPEDEEEKKKMEESKAKFENLCKLMKEILDKKVEKVTISNRLVSSPCCIVTSTYGWTANMERIMKAQALRDNS 615
[Close]
BLAST of FC931602 vs. ExPASy Swiss-Prot
Match: HS90B_HUMAN (Heat shock protein HSP 90-beta OS=Homo sapiens GN=HSP90AB1 PE=1 SV=4)

HSP 1 Score: 244.588 bits (623), Expect = 3.796e-64
Identity = 119/210 (56.67%), Postives = 149/210 (70.95%), Query Frame = 1 
Query:    1 KNLVKKCLELFQEIAENKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDTA 630
            KN+VKKCLELF E+AE+KE+Y KFYE+FSKNLKLGIHEDSTN+ +L+ELLRYH+++SGDE+TSL +YV+RMKE Q  IYYITGESK+ V NS F+E+++K+G+EV+YM + IDEY V QLKEF+GK LVS T                          CK++K++L                PCC+VT  YGWTANMERIMKAQALRD +
Sbjct:  406 KNIVKKCLELFSELAEDKENYKKFYEAFSKNLKLGIHEDSTNRRRLSELLRYHTSQSGDEMTSLSEYVSRMKETQKSIYYITGESKEQVANSAFVERVRKRGFEVVYMTEPIDEYCVQQLKEFDGKSLVSVTKEGLELPEDEEEKKKMEESKAKFENLCKLMKEILDKKVEKVTISNRLVSSPCCIVTSTYGWTANMERIMKAQALRDNS 615
[Close]
BLAST of FC931602 vs. ExPASy Swiss-Prot
Match: HS90B_HORSE (Heat shock protein HSP 90-beta OS=Equus caballus GN=HSP90AB1 PE=2 SV=3)

HSP 1 Score: 244.588 bits (623), Expect = 3.796e-64
Identity = 119/210 (56.67%), Postives = 149/210 (70.95%), Query Frame = 1 
Query:    1 KNLVKKCLELFQEIAENKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDTA 630
            KN+VKKCLELF E+AE+KE+Y KFYE+FSKNLKLGIHEDSTN+ +L+ELLRYH+++SGDE+TSL +YV+RMKE Q  IYYITGESK+ V NS F+E+++K+G+EV+YM + IDEY V QLKEF+GK LVS T                          CK++K++L                PCC+VT  YGWTANMERIMKAQALRD +
Sbjct:  406 KNIVKKCLELFSELAEDKENYKKFYEAFSKNLKLGIHEDSTNRRRLSELLRYHTSQSGDEMTSLSEYVSRMKETQKSIYYITGESKEQVANSAFVERVRKRGFEVVYMTEPIDEYCVQQLKEFDGKSLVSVTKEGLELPEDEEEKKKMEESKAKFENLCKLMKEILDKKVEKVTISNRLVSSPCCIVTSTYGWTANMERIMKAQALRDNS 615
[Close]
BLAST of FC931602 vs. ExPASy Swiss-Prot
Match: HS90B_CHICK (Heat shock cognate protein HSP 90-beta OS=Gallus gallus GN=HSP90AB1 PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 3.796e-64
Identity = 119/210 (56.67%), Postives = 149/210 (70.95%), Query Frame = 1 
Query:    1 KNLVKKCLELFQEIAENKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDTA 630
            KN+VKKCLELF E+AE+KE+Y KFYE+FSKNLKLGIHEDSTN+ +L+ELLRYH+++SGDE+TSL +YV+RMKE Q  IYYITGESK+ V NS F+E+++K+G+EV+YM + IDEY V QLKEF+GK LVS T                          CK++K++L                PCC+VT  YGWTANMERIMKAQALRD +
Sbjct:  407 KNIVKKCLELFTELAEDKENYKKFYEAFSKNLKLGIHEDSTNRKRLSELLRYHTSQSGDEMTSLSEYVSRMKESQKSIYYITGESKEQVANSAFVERVRKRGFEVVYMTEPIDEYCVQQLKEFDGKTLVSVTKEGLELPEDEEEKKNMEESKAKFETLCKLMKEILDKKVEKVTISNRLVSSPCCIVTSTYGWTANMERIMKAQALRDNS 616
[Close]
BLAST of FC931602 vs. ExPASy Swiss-Prot
Match: HS90B_BOVIN (Heat shock protein HSP 90-beta OS=Bos taurus GN=HSP90AB1 PE=2 SV=3)

HSP 1 Score: 244.588 bits (623), Expect = 3.796e-64
Identity = 119/210 (56.67%), Postives = 149/210 (70.95%), Query Frame = 1 
Query:    1 KNLVKKCLELFQEIAENKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDTA 630
            KN+VKKCLELF E+AE+KE+Y KFYE+FSKNLKLGIHEDSTN+ +L+ELLRYH+++SGDE+TSL +YV+RMKE Q  IYYITGESK+ V NS F+E+++K+G+EV+YM + IDEY V QLKEF+GK LVS T                          CK++K++L                PCC+VT  YGWTANMERIMKAQALRD +
Sbjct:  406 KNIVKKCLELFSELAEDKENYKKFYEAFSKNLKLGIHEDSTNRRRLSELLRYHTSQSGDEMTSLSEYVSRMKETQKSIYYITGESKEQVANSAFVERVRKRGFEVVYMTEPIDEYCVQQLKEFDGKSLVSVTKEGLELPEDEEEKKKMEESKAKFENLCKLMKEILDKKVEKVTISNRLVSSPCCIVTSTYGWTANMERIMKAQALRDNS 615
[Close]
BLAST of FC931602 vs. ExPASy Swiss-Prot
Match: HS90B_MOUSE (Heat shock protein HSP 90-beta OS=Mus musculus GN=Hsp90ab1 PE=1 SV=2)

HSP 1 Score: 242.662 bits (618), Expect = 1.442e-63
Identity = 118/210 (56.19%), Postives = 148/210 (70.48%), Query Frame = 1 
Query:    1 KNLVKKCLELFQEIAENKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDTA 630
            KN+VKKCLELF E+AE+KE+Y KFYE+FSKNLKLGIHEDSTN+ +L+ELLRYH+++SGDE+TSL +YV+RMKE Q  IYYITGESK+ V N  F+E+++K+G+EV+YM + IDEY V QLKEF+GK LVS T                          CK++K++L                PCC+VT  YGWTANMERIMKAQALRD +
Sbjct:  406 KNIVKKCLELFSELAEDKENYKKFYEAFSKNLKLGIHEDSTNRRRLSELLRYHTSQSGDEMTSLSEYVSRMKETQKSIYYITGESKEQVANPAFVERVRKRGFEVVYMTEPIDEYCVQQLKEFDGKSLVSVTKEGLELPEDEEEKKKMEESKAKFENLCKLMKEILDKKVEKVTISNRLVSSPCCIVTSTYGWTANMERIMKAQALRDNS 615
The following BLAST results are available for this feature:
BLAST of FC931602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 371
Match NameE-valueIdentityDescription
HSP82_MAIZE1.755e-7769.34Heat shock protein 82 OS=Zea mays GN=HSP82 PE=3 SV... [more]
HSC90_DICDI9.653e-6862.38Heat shock cognate 90 kDa protein OS=Dictyostelium... [more]
HS90B_RAT3.796e-6456.67Heat shock protein HSP 90-beta OS=Rattus norvegicu... [more]
HS90B_PONAB3.796e-6456.67Heat shock protein HSP 90-beta OS=Pongo abelii GN=... [more]
HS90B_MACFA3.796e-6456.67Heat shock protein HSP 90-beta OS=Macaca fascicula... [more]
HS90B_HUMAN3.796e-6456.67Heat shock protein HSP 90-beta OS=Homo sapiens GN=... [more]
HS90B_HORSE3.796e-6456.67Heat shock protein HSP 90-beta OS=Equus caballus G... [more]
HS90B_CHICK3.796e-6456.67Heat shock cognate protein HSP 90-beta OS=Gallus g... [more]
HS90B_BOVIN3.796e-6456.67Heat shock protein HSP 90-beta OS=Bos taurus GN=HS... [more]
HS90B_MOUSE1.442e-6356.19Heat shock protein HSP 90-beta OS=Mus musculus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC34107A02EF PostHarvP1 Citrus clementina cDNA clone C34107A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931602 ID=FC931602; Name=FC931602; organism=Citrus clementina; type=EST; length=695bp
AAGAACTTGGTGAAGAAGTGCCTTGAGCTCTTCCAAGAGATTGCTGAGAA
CAAGGAAGATTACAACAAGTTTTATGAGTCATTCTCTAAGAACCTAAAGC
TTGGTATCCATGAGGACTCCACCAACAAGACCAAGCTTGCTGAGCTGCTC
CGATACCATTCCACCAAGAGTGGTGATGAGTTGACTAGCTTGAAGGATTA
TGTGACCAGAATGAAGGAAGGCCAGAATGATATCTACTACATCACTGGTG
AGAGCAAGAAGGCTGTTGAGAACTCCCCATTTCTTGAGAAGCTCAAGAAG
AAGGGCTATGAAGTGCTCTACATGGTTGATGCCATAGATGAGTACGCTGT
TGGTCAGCTCAAGGAGTTTGAGGGAAAGAAGCTTGTCTCAGCAACCAAAG
AAGGTCTCAAGCTTGACGAGAGTGAAGATGAGAAGAAGAAGAAGGAAACC
TTGAAGGAGAAATTTGAGGGTCTCTGCAAGGTGATCAAGGATGTTTTGGG
TGACAAGGTCGAGAAGGTTGTGGTGTCTGACCGTGTTGTTGACTCACCCT
GCTGTTTGGTGACTGGTGAGTATGGATGGACAGCCAACATGGAGAGGATC
ATGAAGGCTCAGGCCTTGAGAGACACAGCATGGCTGGTTACATGTCCAGC
AAGAAGACCATGGAGATCAATCGGAGAACCCATCATGGAGGAGCT
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