FC931602

Overview
NameFC931602
Unique NameFC931602
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931602_ssr431 microsatellite FC931602_ssr431:431..442. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10970 contig Ccv1_Contig10970:773..1468. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC931602 vs. ExPASy Swiss-Prot
Match: HTPG_ORITB (Chaperone protein htpG OS=Orientia tsutsugamushi (strain Boryong) GN=htpG PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.674e-11
Identity = 37/124 (29.84%), Postives = 71/124 (57.26%), Query Frame = 1 
Query:   25 ELFQEIAENKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT 396
            EL ++  +++ +Y  F+ +F   LK G+ E + +  KL ++  + S    D+  SL +Y+  +K  Q +IYYITG+  +A+++SP +E L  +  +VL + D +D++ V   +++    L S T
Sbjct:  350 ELEKQKTKDQGEYETFWNNFGAVLKEGLCEGTADVDKLLKICLFRSALQ-DKFISLDEYIANLKSEQKNIYYITGDDLEALKSSPQIEGLLSRNIDVLLLTDDVDKFWVMVTRKYNDYVLKSVT 472
The following BLAST results are available for this feature:
BLAST of FC931602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 371
Match NameE-valueIdentityDescription
HTPG_ORITB1.674e-1129.84Chaperone protein htpG OS=Orientia tsutsugamushi (... [more]

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Properties
Property NameValue
Genbank descriptionC34107A02EF PostHarvP1 Citrus clementina cDNA clone C34107A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931602 ID=FC931602; Name=FC931602; organism=Citrus clementina; type=EST; length=695bp
AAGAACTTGGTGAAGAAGTGCCTTGAGCTCTTCCAAGAGATTGCTGAGAA
CAAGGAAGATTACAACAAGTTTTATGAGTCATTCTCTAAGAACCTAAAGC
TTGGTATCCATGAGGACTCCACCAACAAGACCAAGCTTGCTGAGCTGCTC
CGATACCATTCCACCAAGAGTGGTGATGAGTTGACTAGCTTGAAGGATTA
TGTGACCAGAATGAAGGAAGGCCAGAATGATATCTACTACATCACTGGTG
AGAGCAAGAAGGCTGTTGAGAACTCCCCATTTCTTGAGAAGCTCAAGAAG
AAGGGCTATGAAGTGCTCTACATGGTTGATGCCATAGATGAGTACGCTGT
TGGTCAGCTCAAGGAGTTTGAGGGAAAGAAGCTTGTCTCAGCAACCAAAG
AAGGTCTCAAGCTTGACGAGAGTGAAGATGAGAAGAAGAAGAAGGAAACC
TTGAAGGAGAAATTTGAGGGTCTCTGCAAGGTGATCAAGGATGTTTTGGG
TGACAAGGTCGAGAAGGTTGTGGTGTCTGACCGTGTTGTTGACTCACCCT
GCTGTTTGGTGACTGGTGAGTATGGATGGACAGCCAACATGGAGAGGATC
ATGAAGGCTCAGGCCTTGAGAGACACAGCATGGCTGGTTACATGTCCAGC
AAGAAGACCATGGAGATCAATCGGAGAACCCATCATGGAGGAGCT
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