FC931606

Overview
NameFC931606
Unique NameFC931606
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12983 contig Ccv1_Contig12983:44..755. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931606 vs. ExPASy Swiss-Prot
Match: CSN5_ASHGO (COP9 signalosome complex subunit 5 OS=Ashbya gossypii GN=RRI1 PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.347e-46
Identity = 86/157 (54.78%), Postives = 115/157 (73.25%), Query Frame = 3
Query:  213 AQTKFQQEKPWVNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPE 683
            +Q + QQE  W  DP YF++  +SALA +K++ HA  GG +EV+G++ G    + I+V+D++ LPVEGTETRVNAQ ++YEY V Y +T    G     VGWYHSHPGYGCWLSGID  TQ LNQ FQ+P+LA+V+DP R+ ++G ++IGAFRT PE
Sbjct:   54 SQVRVQQEL-WKQDPTYFQKAALSALACMKILRHAFDGGDMEVLGMLLGYVQDEMIVVVDSYRLPVEGTETRVNAQMESYEYTVQYLETAVPEGLA--IVGWYHSHPGYGCWLSGIDAETQTLNQNFQDPYLAIVVDPKRSKASGVIDIGAFRTMPE 207          
BLAST of FC931606 vs. ExPASy Swiss-Prot
Match: CSN5_KLULA (COP9 signalosome complex subunit 5 OS=Kluyveromyces lactis GN=RRI1 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.113e-41
Identity = 84/189 (44.44%), Postives = 121/189 (64.02%), Query Frame = 3
Query:  114 WELENNIVSMETPPTNSTADTSASDAIFFYDEGAQTKFQQEKPWVNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYP 680
            W   N  ++ ET   +S++D+S +  +    +    +         +P +F++  IS LA  KM+ HA  GG IEVMG++ G T  D I+V D ++LPV+GTETRVNA  ++YEYMV Y   +    + +  VGWYHSHPGYGCWLS ID+ TQ LNQ +Q+P+LA+V+DP +++S   ++IGAFRT P
Sbjct:   17 WIQANEDINTETS-LSSSSDSSTTIPVI---DHLPARIPYATDLKRNPCHFQKCLISRLATTKMLSHAVDGGDIEVMGMLVGYTSNDMIVVKDCYSLPVQGTETRVNAHMESYEYMVQY--LDAFVTKEDKIVGWYHSHPGYGCWLSNIDIQTQSLNQNYQDPYLAIVVDPKKSLSGNTLDIGAFRTLP 199          
BLAST of FC931606 vs. ExPASy Swiss-Prot
Match: CSN5_CANGA (COP9 signalosome complex subunit 5 OS=Candida glabrata GN=RRI1 PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.674e-38
Identity = 75/150 (50.00%), Postives = 101/150 (67.33%), Query Frame = 3
Query:  249 NDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDY--SQTNKQAGRLE---NAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPE 683
            N P +++ V +S LA  K++ HA  GG IEVMG++ G   G+  ++ D F LPVEGTET VNA  ++YEYMV +      +   R E   N +GWYHSHPGY CWLS ID+ TQ LNQQ Q+P+LA+V+DP ++ +  KV IG+FRTY +
Sbjct:   66 NSPLFYQNVLLSKLACSKILCHATKGGNIEVMGMLLGNVIGNTFVIFDCFELPVEGTETMVNAHMESYEYMVQFYHEMVERSYTRNEENLNIIGWYHSHPGYDCWLSNIDMQTQSLNQQHQDPYLAIVVDPHKSKNDQKVRIGSFRTYQD 215          
BLAST of FC931606 vs. ExPASy Swiss-Prot
Match: CSN5_YEAST (COP9 signalosome complex subunit 5 OS=Saccharomyces cerevisiae GN=RRI1 PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.123e-34
Identity = 76/163 (46.63%), Postives = 102/163 (62.58%), Query Frame = 3
Query:  216 QTKFQQEKPWVNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDY----------SQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRT 674
            +TK +Q+     D   +  V IS L+  K+  +A  GG IE+MG++ G T  D I+VMD F LPV GTETRVNAQ ++YEYMV Y                 G   N VGW+HSHPGY CWLS ID+ TQ LNQ+FQ+P++A+V+DP +++    + +GAFRT
Sbjct:   54 KTKLKQQSS--TDIPSYTHVLISKLSCEKITHYAVRGGNIEIMGILMGFTLKDNIVVMDCFNLPVVGTETRVNAQLESYEYMVQYIDEMYNHNDGGDGRDYKGAKLNVVGWFHSHPGYDCWLSNIDIQTQDLNQRFQDPYVAIVVDPLKSLEDKILRMGAFRT 214          
BLAST of FC931606 vs. ExPASy Swiss-Prot
Match: CSN5_YEAS7 (COP9 signalosome complex subunit 5 OS=Saccharomyces cerevisiae (strain YJM789) GN=RRI1 PE=3 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.123e-34
Identity = 76/163 (46.63%), Postives = 102/163 (62.58%), Query Frame = 3
Query:  216 QTKFQQEKPWVNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDY----------SQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRT 674
            +TK +Q+     D   +  V IS L+  K+  +A  GG IE+MG++ G T  D I+VMD F LPV GTETRVNAQ ++YEYMV Y                 G   N VGW+HSHPGY CWLS ID+ TQ LNQ+FQ+P++A+V+DP +++    + +GAFRT
Sbjct:   54 KTKLKQQSS--TDIPSYTHVLISKLSCEKITHYAVRGGNIEIMGILMGFTLKDNIVVMDCFNLPVVGTETRVNAQLESYEYMVQYIDEMYNHNDGGDGRDYKGAKLNVVGWFHSHPGYDCWLSNIDIQTQDLNQRFQDPYVAIVVDPLKSLEDKILRMGAFRT 214          
BLAST of FC931606 vs. ExPASy Swiss-Prot
Match: CSN5_YEAS1 (COP9 signalosome complex subunit 5 OS=Saccharomyces cerevisiae (strain RM11-1a) GN=RRI1 PE=3 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.123e-34
Identity = 76/163 (46.63%), Postives = 102/163 (62.58%), Query Frame = 3
Query:  216 QTKFQQEKPWVNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDY----------SQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRT 674
            +TK +Q+     D   +  V IS L+  K+  +A  GG IE+MG++ G T  D I+VMD F LPV GTETRVNAQ ++YEYMV Y                 G   N VGW+HSHPGY CWLS ID+ TQ LNQ+FQ+P++A+V+DP +++    + +GAFRT
Sbjct:   54 KTKLKQQSS--TDIPSYTHVLISKLSCEKITHYAVRGGNIEIMGILMGFTLKDNIVVMDCFNLPVVGTETRVNAQLESYEYMVQYIDEMYNHNDGGDGRDYKGAKLNVVGWFHSHPGYDCWLSNIDIQTQDLNQRFQDPYVAIVVDPLKSLEDKILRMGAFRT 214          
BLAST of FC931606 vs. ExPASy Swiss-Prot
Match: PSDE_DICDI (26S proteasome non-ATPase regulatory subunit 14 OS=Dictyostelium discoideum GN=psmD14 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.018e-27
Identity = 71/142 (50.00%), Postives = 92/142 (64.79%), Query Frame = 3
Query:  255 PHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKT-DGDAIIVMDAFALPVEGTETRVNAQADAYEY-MVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRT 674
            P   + + IS+LALLKM+ HAR+G  +EVMGLM G+  D   I V+D FA+P  GT   V A    ++  M+D     KQ GR E  +GWYHSHPG+GCWLS +DV+TQ   +Q Q   +AVV+DP ++V  GKV I AFRT
Sbjct:   25 PDTAETIHISSLALLKMLQHARAGVPLEVMGLMLGELIDEYTIRVIDVFAMPQSGTSVSVEAIDPVFQTKMLDML---KQTGRDEIVIGWYHSHPGFGCWLSSVDVNTQQSFEQLQSRAVAVVVDPLQSV-RGKVVIDAFRT 162          
BLAST of FC931606 vs. ExPASy Swiss-Prot
Match: YPT5_CAEEL (Uncharacterized protein F37A4.5 OS=Caenorhabditis elegans GN=F37A4.5 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.868e-27
Identity = 68/144 (47.22%), Postives = 88/144 (61.11%), Query Frame = 3
Query:  246 VNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGK-TDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRT 674
            ++ P   + V IS+LALLKM+ HARSG  +EVMGLM G   D   I V D FA+P  GT   V +    Y+    +    K  GR EN VGWYHSHPG+GCWLS +DV+TQ   +      +AVV+DP ++V  GKV + AFR+
Sbjct:   20 LDHPDTSETVNISSLALLKMLRHARSGIPLEVMGLMLGDFVDDYTINVTDVFAMPQSGTSVTVESVDPVYQ--TKHMDLLKLVGRTENVVGWYHSHPGFGCWLSSVDVNTQQSFEALHPRAVAVVVDPIQSVK-GKVMLDAFRS 160          
BLAST of FC931606 vs. ExPASy Swiss-Prot
Match: PSDE_CAEEL (26S proteasome non-ATPase regulatory subunit 14 OS=Caenorhabditis elegans GN=rpn-11 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.052e-27
Identity = 71/148 (47.97%), Postives = 93/148 (62.84%), Query Frame = 3
Query:  273 VKISALALLKMVVHARSGGTIEVMGLMQGK-TDGDAIIVMDAFALPVEGTETRVNAQADAYEY-MVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTY-PEGYXPPDEP 707
            V IS+LALLKM+ H R+G  +EVMGLM G+  D   + V+D FA+P  GT   V A    ++  M+D     KQ GR E  VGWYHSHPG+GCWLSG+D++TQ   +   +  +AVV+DP ++V  GKV I AFRT  P+      EP
Sbjct:   33 VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVIDVFAMPQSGTGVSVEAVDPVFQAKMLDML---KQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSDRAVAVVVDPIQSVK-GKVVIDAFRTINPQSMALNQEP 176          
BLAST of FC931606 vs. ExPASy Swiss-Prot
Match: PSDE_MOUSE (26S proteasome non-ATPase regulatory subunit 14 OS=Mus musculus GN=Psmd14 PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 6.598e-27
Identity = 68/137 (49.64%), Postives = 90/137 (65.69%), Query Frame = 3
Query:  267 KRVKISALALLKMVVHARSGGTIEVMGLMQGK-TDGDAIIVMDAFALPVEGTETRVNAQADAYEY-MVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFR 671
            ++V IS+LALLKM+ H R+G  +EVMGLM G+  D   + V+D FA+P  GT   V A    ++  M+D     KQ GR E  VGWYHSHPG+GCWLSG+D++TQ   +   E  +AVV+DP ++V  GKV I AFR
Sbjct:   29 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQSGTGVSVEAVDPVFQAKMLDML---KQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVK-GKVVIDAFR 161          
The following BLAST results are available for this feature:
BLAST of FC931606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
CSN5_ASHGO6.347e-4654.78COP9 signalosome complex subunit 5 OS=Ashbya gossy... [more]
CSN5_KLULA2.113e-4144.44COP9 signalosome complex subunit 5 OS=Kluyveromyce... [more]
CSN5_CANGA1.674e-3850.00COP9 signalosome complex subunit 5 OS=Candida glab... [more]
CSN5_YEAST1.123e-3446.63COP9 signalosome complex subunit 5 OS=Saccharomyce... [more]
CSN5_YEAS71.123e-3446.63COP9 signalosome complex subunit 5 OS=Saccharomyce... [more]
CSN5_YEAS11.123e-3446.63COP9 signalosome complex subunit 5 OS=Saccharomyce... [more]
PSDE_DICDI1.018e-2750.0026S proteasome non-ATPase regulatory subunit 14 OS... [more]
YPT5_CAEEL3.868e-2747.22Uncharacterized protein F37A4.5 OS=Caenorhabditis ... [more]
PSDE_CAEEL5.052e-2747.9726S proteasome non-ATPase regulatory subunit 14 OS... [more]
PSDE_MOUSE6.598e-2749.6426S proteasome non-ATPase regulatory subunit 14 OS... [more]

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Properties
Property NameValue
Genbank descriptionC34107A06EF PostHarvP1 Citrus clementina cDNA clone C34107A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931606 ID=FC931606; Name=FC931606; organism=Citrus clementina; type=EST; length=712bp
GGTTGGTGTTGTTGGTGTTCGTCTTGTTTGTTGTTCCAGACAGTGTAGGG
TGTAGGCAGAGAGGGAGAGAAAACAACATAGTATCGATGGACTCGTCAAT
AGCGCAAAAGACATGGGAACTGGAAAACAACATAGTATCGATGGAGACAC
CGCCGACAAACTCAACAGCCGACACGTCAGCATCGGACGCGATTTTCTTC
TACGACGAAGGGGCGCAGACCAAGTTCCAGCAAGAGAAGCCCTGGGTCAA
TGACCCTCACTACTTCAAGCGCGTGAAGATCTCCGCACTCGCCCTCCTCA
AGATGGTCGTCCATGCGCGATCCGGTGGGACCATCGAGGTCATGGGCCTT
ATGCAAGGCAAAACCGACGGCGACGCCATCATTGTCATGGACGCCTTTGC
TTTGCCCGTTGAAGGTACCGAAACCAGGGTTAATGCTCAGGCCGATGCTT
ATGAATATATGGTCGATTATTCCCAAACCAACAAACAGGCCGGACGTCTG
GAGAATGCTGTTGGGTGGTACCATTCACATCCTGGCTATGGATGCTGGCT
TTCGGGTATTGATGTTTCAACTCAAATGCTTAATCAGCAGTTTCAGGAGC
CATTTTTGGCTGTTGTGATTGATCCTACTAGGACTGTTTCTGCTGGGAAA
GTTGAGATTGGAGCTTTCAGGACGTATCCTGAAGGATACNAGCCTCCGGA
TGAACCCATCTC
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