FC931608

Overview
NameFC931608
Unique NameFC931608
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: CP19D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Arabidopsis thaliana GN=CYP19-4 PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.389e-21
Identity = 59/135 (43.70%), Postives = 78/135 (57.78%), Query Frame = 3
Query:  105 SMGSFTVELYYKHSPRTCRNFAEL--SRRG--------YYNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRL 476
            S G   + L+ K  P+T  NF  L    +G        +Y  SKFHRII  F++Q             SIYG  F DE   +LKHTG G+LSMAN+G +TNGSQFFIT    S LDG+H +FG+V +GM+V+ ++
Sbjct:   44 SAGRVVIGLFGKAVPKTAENFRALCTGEKGVGKSGKPLHYKGSKFHRIIPSFMIQGGDFTHGNGMGGESIYGQKFADE-NFKLKHTGPGVLSMANSGEDTNGSQFFITTVTTSWLDGRHVVFGKVVQGMDVVYKI 177          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: PPID_ASPOR (Peptidyl-prolyl cis-trans isomerase D OS=Aspergillus oryzae GN=cpr6 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.120e-21
Identity = 59/139 (42.45%), Postives = 80/139 (57.55%), Query Frame = 3
Query:  147 PRTCRNFAEL-------SRRG---YYNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKIL 530
            P+T  NF  L        ++G   ++  S FHR+IK F++Q             SIYG  F DE   ELKH    +LSMAN+GP TNGSQFFIT  P  HLDGKH +FG V  G  V++++ ++ T + D+P+ DV I+
Sbjct:   32 PKTAENFRALCTGEKGMGKQGKPLHFKGSIFHRVIKQFMIQGGDFTAFNGTGGESIYGEKFPDE-NFELKHDKPFLLSMANSGPGTNGSQFFITTVPTPHLDGKHVVFGEVINGKSVVRKVENMNT-QADKPVKDVTIV 168          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: PPIA_DICDI (Peptidyl-prolyl cis-trans isomerase A OS=Dictyostelium discoideum GN=ppiA PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.120e-21
Identity = 62/147 (42.18%), Postives = 80/147 (54.42%), Query Frame = 3
Query:  111 GSFTVELYYKHSPRTCRNFAEL--SRRGY--------YNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSV--QTDKDDRPI 512
            G   +ELY    P+T  NF  L    +G         Y  S FHR+I +F+ Q             SIYG+ F DE   +LKH G G LSMANAG NTNGSQFFI + P   LDGKH +FG V  GM+V+K++ +   Q+ K  +P+
Sbjct:   26 GKVVMELYANTVPKTAENFRALCTGEKGIGKSGKPLSYKGSSFHRVITNFMCQGGDFTMGNGTGGESIYGNKFADE-NFKLKHFGQGTLSMANAGANTNGSQFFICVAPTDWLDGKHVVFGFVTEGMDVVKKMEAAGSQSGKTTKPV 171          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: PPI2_SYNY3 (Peptidyl-prolyl cis-trans isomerase slr1251 OS=Synechocystis sp. (strain PCC 6803) GN=slr1251 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.120e-21
Identity = 57/133 (42.86%), Postives = 76/133 (57.14%), Query Frame = 3
Query:  111 GSFTVELYYKHSPRTCRNFAEL--SRRG--------YYNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRL 476
            G   +EL+ + +P+T  NF  L    +G        ++  S FHR+I DF+ Q             SIYG  F DE   +LKH   G+LSMANAGPNTNGSQFF+T  P   LDGKH +FG V  G+E++++L
Sbjct:   17 GRIVMELFDEVTPKTAENFRALCTGEKGVGKAGKPLHFKGSHFHRVITDFMAQGGDFTRGNGTGGESIYGEKFADE-NFQLKHDRPGLLSMANAGPNTNGSQFFLTFVPCPWLDGKHVVFGEVVEGLEILEQL 148          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: PPIF_HUMAN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Homo sapiens GN=PPIF PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.075e-21
Identity = 64/148 (43.24%), Postives = 79/148 (53.38%), Query Frame = 3
Query:   66 ASDDGPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAEL--SRRGY-YNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGS 482
            +S  G P V L+       +G   +EL     P+T  NF  L    +G+ Y  S FHR+I  F+ Q             SIYG  F DE    LKH G G+LSMANAGPNTNGSQFFI       LDGKH +FG V  GM+V+K++ S
Sbjct:   40 SSSSGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIES 186          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: CYP2_CAEEL (Peptidyl-prolyl cis-trans isomerase 2 OS=Caenorhabditis elegans GN=cyn-2 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.075e-21
Identity = 57/135 (42.22%), Postives = 76/135 (56.30%), Query Frame = 3
Query:  111 GSFTVELYYKHSPRTCRNFAEL----------SRRGYYNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGS 482
            G   +ELY    P+T  NF  L           ++ ++  SKFHRII +F++Q             SI+G  F+DE   E KHTG G+LSMAN G NTNGSQFF+     + LDGKH +FG+V  GM+V+K + S
Sbjct:   18 GRIVMELYNDIVPKTAENFRALCTGEKGKGKSGKKLHFKGSKFHRIIPEFMIQGGDFTEGNGTGGESIHGEKFDDENFKE-KHTGPGVLSMANCGANTNGSQFFLCTVKTTWLDGKHVVFGKVIEGMDVVKAIES 151          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: RBP2_BOVIN (E3 SUMO-protein ligase RANBP2 (Fragment) OS=Bos taurus GN=RANBP2 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.322e-21
Identity = 62/149 (41.61%), Postives = 84/149 (56.38%), Query Frame = 3
Query:   63 LASDDGPPEVTLETSMGSFTVELYYKHSPRTCRNFAEL--SRRGY-YNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDK 497
            + +DD P        +G  T+EL+    P+T  NF  L    +G+ + +S FHR+I DF+ Q             SIYG  FEDE   ++KHTG G+LSMAN G +TN SQFFITL  A  LD KH +FG V  GM+ +K++ S  + K
Sbjct:  931 ICADDEP--------LGRITMELFSNIVPKTAENFRALCTGEKGFGFKSSIFHRVIPDFVCQGGDITKHDGTGGRSIYGDKFEDE-NFDVKHTGPGLLSMANRGQDTNNSQFFITLKKAERLDFKHVVFGFVKDGMDTVKKIESFGSPK 1070          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: PPID_ASHGO (Peptidyl-prolyl cis-trans isomerase D OS=Ashbya gossypii GN=CPR6 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.322e-21
Identity = 64/152 (42.11%), Postives = 80/152 (52.63%), Query Frame = 3
Query:  111 GSFTVELYYKHSPRTCRNFAEL---------SRRGY---YNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKI 527
            G    E+Y   +P+T  NF  L         ++ G    Y  S FHR+IK F+ Q             SIYG  FEDE     KH    +LSMANAGPNTNGSQ FIT  P  HLDGKH +FG V +G  V++ +   +T   DRP+ DV+I
Sbjct:   19 GRVVFEVYSDVTPKTAENFVRLCAGDAGECRTKPGVPLCYQGSLFHRVIKGFMCQFGDFTNGDGTGGESIYGEKFEDENFAR-KHDRPFLLSMANAGPNTNGSQCFITCAPTPHLDGKHVVFGEVIQGKRVVRAIERQET-AADRPLADVRI 168          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: PPIA_DROME (Peptidyl-prolyl cis-trans isomerase OS=Drosophila melanogaster GN=Cyp1 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.322e-21
Identity = 59/129 (45.74%), Postives = 76/129 (58.91%), Query Frame = 3
Query:  108 MGSFTVELYYKHSPRTCRNFAEL--SRRGY-YNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGS 482
            +G   +EL     P+T  NF  L    +G+ Y  S FHR+I +F+ Q             SIYG+ F DE   ELKHTG+GILSMANAG NTNGSQFFI     + LD KH +FG V  G++V+K++ S
Sbjct:   80 LGRIVMELRSDVVPKTAENFRALCTGEKGFGYKGSIFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFPDE-NFELKHTGSGILSMANAGANTNGSQFFICTVKTAWLDNKHVVFGEVVEGLDVVKKIES 207          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: CP19A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Arabidopsis thaliana GN=CYP19-1 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.322e-21
Identity = 64/143 (44.76%), Postives = 77/143 (53.85%), Query Frame = 3
Query:  105 SMGSFTVELYYKHSPRTCRNFAEL--SRRG--------YYNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDE--IKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSVQTD 494
            S G   +ELY   +P T  NF  L    RG        +Y  S FHR+I  F+ Q             SIYG  F+DE  IK   KHTG GILSMANAG NTNGSQFFI     S LDGKH +FG+V  G+ V++ +  V +D
Sbjct:   17 SAGRIVMELYADTTPETAENFRALCTGERGIGKQGKPLHYKGSSFHRVIPKFMCQGGDFTAGNGTGGESIYGSKFKDENFIK---KHTGPGILSMANAGANTNGSQFFICTEKTSWLDGKHVVFGQVVEGLNVVRDIEKVGSD 156          
The following BLAST results are available for this feature:
BLAST of FC931608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 258
Match NameE-valueIdentityDescription
CP19D_ARATH2.389e-2143.70Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Ara... [more]
PPID_ASPOR3.120e-2142.45Peptidyl-prolyl cis-trans isomerase D OS=Aspergill... [more]
PPIA_DICDI3.120e-2142.18Peptidyl-prolyl cis-trans isomerase A OS=Dictyoste... [more]
PPI2_SYNY33.120e-2142.86Peptidyl-prolyl cis-trans isomerase slr1251 OS=Syn... [more]
PPIF_HUMAN4.075e-2143.24Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
CYP2_CAEEL4.075e-2142.22Peptidyl-prolyl cis-trans isomerase 2 OS=Caenorhab... [more]
RBP2_BOVIN5.322e-2141.61E3 SUMO-protein ligase RANBP2 (Fragment) OS=Bos ta... [more]
PPID_ASHGO5.322e-2142.11Peptidyl-prolyl cis-trans isomerase D OS=Ashbya go... [more]
PPIA_DROME5.322e-2145.74Peptidyl-prolyl cis-trans isomerase OS=Drosophila ... [more]
CP19A_ARATH5.322e-2144.76Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionC34107A08EF PostHarvP1 Citrus clementina cDNA clone C34107A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931608 ID=FC931608; Name=FC931608; organism=Citrus clementina; type=EST; length=705bp
GATCGTTGTTTCGTTTCTGAGTTTCTGATAGTGTTGTGGTCTTGAAAGCA
ACAATAAAGATGCTGGCAAGTGACGACGGTCCGCCGGAGGTCACTTTAGA
AACTTCCATGGGCTCTTTCACCGTCGAGCTTTACTACAAGCACTCTCCAA
GAACTTGCAGGAACTTTGCTGAACTATCTCGCAGAGGTTATTATAATAAC
AGCAAATTCCACAGAATTATTAAGGATTTTATAGTTCAAGGTGGAGATCC
TACCGGGACTGGAAGGGGAGGAGATTCCATATATGGCCATGTTTTCGAAG
ATGAAATAAAACCAGAATTAAAGCATACTGGAGCTGGGATCTTGTCCATG
GCAAATGCTGGTCCAAATACAAATGGAAGCCAGTTCTTTATCACTTTGAC
GCCTGCTTCACATCTGGATGGAAAGCACACTATATTTGGAAGAGTATGCA
GAGGAATGGAAGTGATCAAAAGGCTTGGCAGTGTCCAAACTGATAAAGAT
GACAGGCCCATCCATGACGTGAAGATACTACGGACTTCTGTTAAGGACTG
ATGCCATGAAACGGTTATGGAAACCAACGTTTCCACATGATTTTGGGTGC
ACTAGAGCCAGTGTTCAAAAATCTGATTCTGAAAATTTCTAACGTCTGAT
TTTGGATGCACTGTACTTTGGTATTTTATTGAACAGAAGGCAAATATGGA
TCATT
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