FC931608

Overview
NameFC931608
Unique NameFC931608
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15358 contig Ccv1_Contig15358:1..705. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: PPIL4_USTMA (Peptidyl-prolyl cis-trans isomerase-like 4 OS=Ustilago maydis GN=CYP6 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.099e-13
Identity = 53/178 (29.78%), Postives = 79/178 (44.38%), Query Frame = 3
Query:   90 VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXXXXSIYGHV------------FEDEIKP-ELKHTGAGILSMANAGPNTN---------------GSQFFITL-TPASHLDGKHTIFGRVCRGME---VIKRLGSVQTDKDDRPIHDVKI 527
            V LETS+G   ++L+ + +PR+C NF +L  + YY  + F R+ KDF+ Q            SI+  +            F  E    +LKH   G +S A    +                 GSQFF+TL     +LDG+H  FG V  G E    + ++    TD   RP+ D++I
Sbjct:    3 VLLETSLGDIVIDLHTELAPRSCTNFLKLCSKHYYKLNAFFRVEKDFLAQTGDPSNTGKGGASIWSQLPSTSQDSSTSTYFTPESSDGQLKHLKKGTVSFACFRKHVQGADEDGEGGSCELLAGSQFFVTLKDELDYLDGRHAPFGMVVEGHEPGGTLDKINHAFTDDQKRPLRDIRI 180          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: PPIA_ACIAD (Peptidyl-prolyl cis-trans isomerase OS=Acinetobacter sp. (strain ADP1) GN=rotA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.458e-12
Identity = 42/161 (26.09%), Postives = 79/161 (49.07%), Query Frame = 3
Query:   90 VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTP-----ASHLDGKHTIFGRVCRGMEVIKRLGSVQTD----KDDRPIHDVKILRTSVK 545
            V ++T++G+  +ELY   +P + +NF    +  +YN + FHR+I +F++Q            +      ++E    L +T   +     + P++  SQFFI +       AS  D  + +FG+V +GM+V+ ++ +V T       + P   VKI+   +K
Sbjct:   24 VEMKTNLGNIEIELYNNKAPISAKNFESYVKNNFYNGTIFHRVIPNFMIQGGGFETNMKEKAT--AAPIKNEASNGLANTRGTLAMARTSNPDSATSQFFINVADNNFLNASRTDAGYAVFGKVIKGMDVVDKIANVPTSTYGMHQNVPKQPVKIISVQIK 182          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: PPIA_SALTY (Peptidyl-prolyl cis-trans isomerase A OS=Salmonella typhimurium GN=ppiA PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.314e-11
Identity = 48/169 (28.40%), Postives = 77/169 (45.56%), Query Frame = 3
Query:   30 SVVVLKATIKMLASDDGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDG-----KHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDV 521
            +V  L A      +  G P V L TS G+  +EL  + +P + +NF +    G+YNN+ FHR+I  F++Q                   ++E    L++T   I     A  ++  SQFFI +   + LD       + +FG+V +GM+V  ++  V       P HDV
Sbjct:   11 AVFALSALSPAALAAKGDPHVLLTTSAGNIELELNSQKAPVSVKNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFNEQMQQKKP--NPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQV-------PTHDV 170          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: PPIA_ECOLI (Peptidyl-prolyl cis-trans isomerase A OS=Escherichia coli (strain K12) GN=ppiA PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11
Identity = 48/169 (28.40%), Postives = 77/169 (45.56%), Query Frame = 3
Query:   30 SVVVLKATIKMLASDDGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDG-----KHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDV 521
            +V  L A      +  G P V L TS G+  +EL  + +P + +NF +    G+YNN+ FHR+I  F++Q                   ++E    L++T   I     A  ++  SQFFI +   + LD       + +FG+V +GM+V  ++  V       P HDV
Sbjct:   11 AVFALSALSPAAMAAKGDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKKP--NPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQV-------PTHDV 170          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: PPIA_ECOL6 (Peptidyl-prolyl cis-trans isomerase A OS=Escherichia coli O6 GN=ppiA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11
Identity = 48/169 (28.40%), Postives = 77/169 (45.56%), Query Frame = 3
Query:   30 SVVVLKATIKMLASDDGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDG-----KHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDV 521
            +V  L A      +  G P V L TS G+  +EL  + +P + +NF +    G+YNN+ FHR+I  F++Q                   ++E    L++T   I     A  ++  SQFFI +   + LD       + +FG+V +GM+V  ++  V       P HDV
Sbjct:   11 AVFALSALSPAAMAAKGDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKKP--NPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQV-------PTHDV 170          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: PPIA_ECO57 (Peptidyl-prolyl cis-trans isomerase A OS=Escherichia coli O157:H7 GN=ppiA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11
Identity = 48/169 (28.40%), Postives = 77/169 (45.56%), Query Frame = 3
Query:   30 SVVVLKATIKMLASDDGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDG-----KHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDV 521
            +V  L A      +  G P V L TS G+  +EL  + +P + +NF +    G+YNN+ FHR+I  F++Q                   ++E    L++T   I     A  ++  SQFFI +   + LD       + +FG+V +GM+V  ++  V       P HDV
Sbjct:   11 AVFALSALSPAAMAAKGDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKKP--NPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQV-------PTHDV 170          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: PPIB_MYCLE (Probable peptidyl-prolyl cis-trans isomerase B OS=Mycobacterium leprae GN=ppiB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.521e-11
Identity = 47/161 (29.19%), Postives = 78/161 (48.45%), Query Frame = 3
Query:   69 SDDGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXXXXSIYGHVFEDEIK--------PELKHT---GAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRV-CRGMEVIKRL--GSVQTDKDDRP 509
            +D      ++ T+ G+  + L    SP T  +FA L+ +G++NN+K HR+    ++                G+ F +E          P+LK       G L+MAN+GPNTNGSQFF+     S L  ++T+FG +   G+  + ++  G + +  DD P
Sbjct:  123 TDPATVSASMATNQGNIGLLLNNAESPCTVNSFASLTGQGFFNNTKCHRLTTSLMLGVLQCGDPKVDGTGGPGYKFANEYPTDQYPPNDPKLKQPVLYPRGTLAMANSGPNTNGSQFFLVYHD-SQLPPEYTVFGTIQADGLATLDKIAKGGIASGGDDGP 282          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: CP21C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP21-3, mitochondrial OS=Arabidopsis thaliana GN=CYP21-3 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.521e-11
Identity = 42/156 (26.92%), Postives = 71/156 (45.51%), Query Frame = 3
Query:   75 DGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSV 542
            D P   TL+T  GS T+EL+   +P     F +  + GY+    F R++K F++Q                 +    I   LKH    ++    A     G +FFI       L+ K T+FGRV +G +V++ +  V+TD   +P   ++I+  ++
Sbjct:   75 DLPRFATLDTGKGSVTIELFKDTAPNVVDQFMKFCQDGYFKGFLFSRVVKHFVIQAGDSAEFDAVKD---WALDRKNIDTSLKHE-EFMVGTPKAKNEQGGFEFFIVSAQIKDLNEKLTVFGRVSKGQDVVQEIEEVETDDQYQPKSPIEIMSVTL 226          
The following BLAST results are available for this feature:
BLAST of FC931608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 258
Match NameE-valueIdentityDescription
PPIL4_USTMA9.099e-1329.78Peptidyl-prolyl cis-trans isomerase-like 4 OS=Usti... [more]
PPIA_ACIAD3.458e-1226.09Peptidyl-prolyl cis-trans isomerase OS=Acinetobact... [more]
PPIA_SALTY1.314e-1128.40Peptidyl-prolyl cis-trans isomerase A OS=Salmonell... [more]
PPIA_ECOLI2.241e-1128.40Peptidyl-prolyl cis-trans isomerase A OS=Escherich... [more]
PPIA_ECOL62.241e-1128.40Peptidyl-prolyl cis-trans isomerase A OS=Escherich... [more]
PPIA_ECO572.241e-1128.40Peptidyl-prolyl cis-trans isomerase A OS=Escherich... [more]
PPIB_MYCLE6.521e-1129.19Probable peptidyl-prolyl cis-trans isomerase B OS=... [more]
CP21C_ARATH6.521e-1126.92Peptidyl-prolyl cis-trans isomerase CYP21-3, mitoc... [more]

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Properties
Property NameValue
Genbank descriptionC34107A08EF PostHarvP1 Citrus clementina cDNA clone C34107A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931608 ID=FC931608; Name=FC931608; organism=Citrus clementina; type=EST; length=705bp
GATCGTTGTTTCGTTTCTGAGTTTCTGATAGTGTTGTGGTCTTGAAAGCA
ACAATAAAGATGCTGGCAAGTGACGACGGTCCGCCGGAGGTCACTTTAGA
AACTTCCATGGGCTCTTTCACCGTCGAGCTTTACTACAAGCACTCTCCAA
GAACTTGCAGGAACTTTGCTGAACTATCTCGCAGAGGTTATTATAATAAC
AGCAAATTCCACAGAATTATTAAGGATTTTATAGTTCAAGGTGGAGATCC
TACCGGGACTGGAAGGGGAGGAGATTCCATATATGGCCATGTTTTCGAAG
ATGAAATAAAACCAGAATTAAAGCATACTGGAGCTGGGATCTTGTCCATG
GCAAATGCTGGTCCAAATACAAATGGAAGCCAGTTCTTTATCACTTTGAC
GCCTGCTTCACATCTGGATGGAAAGCACACTATATTTGGAAGAGTATGCA
GAGGAATGGAAGTGATCAAAAGGCTTGGCAGTGTCCAAACTGATAAAGAT
GACAGGCCCATCCATGACGTGAAGATACTACGGACTTCTGTTAAGGACTG
ATGCCATGAAACGGTTATGGAAACCAACGTTTCCACATGATTTTGGGTGC
ACTAGAGCCAGTGTTCAAAAATCTGATTCTGAAAATTTCTAACGTCTGAT
TTTGGATGCACTGTACTTTGGTATTTTATTGAACAGAAGGCAAATATGGA
TCATT
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