FC931608

Overview
NameFC931608
Unique NameFC931608
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15358 contig Ccv1_Contig15358:1..705. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: PPIL2_SCHPO (Peptidyl-prolyl cis-trans isomerase cyp8 OS=Schizosaccharomyces pombe GN=cyp8 PE=2 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 4.066e-29
Identity = 64/142 (45.07%), Postives = 85/142 (59.86%), Query Frame = 3
Query:  102 TSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKI 527
            T+ G   +EL+  ++P    NF +L+++GYY N+ FHR I  F++Q            SI+G  F+DE    LKH   GI+SMAN G NTNGSQFFI   PA HLD KHTIFGRV  G+ V+  L  V T+ +D P   +K+
Sbjct:  282 TNHGEINIELHTDYAPHAVYNFVQLAKQGYYRNTIFHRNIARFMIQGGDPSGTGRGGQSIWGKPFKDEFCNPLKHDDRGIISMANRGKNTNGSQFFILYGPAKHLDNKHTIFGRVVGGLNVLDALEKVPTNSNDHPKLPIKL 423          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: PPIL3_MOUSE (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Mus musculus GN=Ppil3 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.310e-29
Identity = 66/147 (44.90%), Postives = 86/147 (58.50%), Query Frame = 3
Query:   90 VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSVQ-TDKDDRPIHDVKI 527
            VTL T +G   +E++ + +P+TC NF  L    YYN   FHR IK F+VQ            SI+   FEDE    LKH   G++SMAN GPNTNGSQFFIT     HLD K+T+FG+V  G+E +  L  +   +K  RP++DV I
Sbjct:    3 VTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCVFHRNIKGFMVQTGDPTGTGRGGSSIWAKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHI 149          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: PPIB_SCHJA (Peptidyl-prolyl cis-trans isomerase B OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.310e-29
Identity = 71/152 (46.71%), Postives = 90/152 (59.21%), Query Frame = 3
Query:   99 ETSMGSFTVELYYKHSPRTCRNFAELS--------RRGYYNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKI 527
            E  +G   + L+ K  P+T  NF +LS        R   Y  S FHR+IK F++Q             SIYG  F DE   +LKH GAG LSMANAGPNTNG+QFFIT T    LDGKH +FG+V  GM V++++ ++QTD  DRP+  VKI
Sbjct:   42 EQPLGRIIIGLFGKTVPKTVENFKQLSIGTTLKDGRTAAYKGSTFHRVIKSFMIQGGDFTNHDGTGGFSIYGERFPDE-NFKLKHVGAGWLSMANAGPNTNGAQFFITTTQNPWLDGKHVVFGKVVEGMSVVRQIENMQTDSRDRPVKSVKI 192          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: PPIL2_NEUCR (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Neurospora crassa GN=cyp-8 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.935e-29
Identity = 65/147 (44.22%), Postives = 90/147 (61.22%), Query Frame = 3
Query:   90 VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGME-VIKRLGSVQTDKDDRPIHDVKI 527
            V +ET++G  T+EL  + +P+   NF  LS +GYY +  FHR I++F++Q            SI+G  FEDE +    H+  GI+SMAN G NTN SQFFIT  PASHLD KHTIF +V  G +  +  + +V TD  DRP++ + I
Sbjct:  332 VRMETNLGPLTLELLPEFAPKAVWNFLRLSEKGYYRDVAFHRSIRNFMIQGGDPSGTGRGGSSIWGKNFEDEFEGPNTHSARGIVSMANKGKNTNSSQFFITYRPASHLDRKHTIFAKVIEGQDTTLTAMENVATDGSDRPLNKIVI 478          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: SDC10_XENLA (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Xenopus laevis GN=sdccag10 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.057e-29
Identity = 64/153 (41.83%), Postives = 92/153 (60.13%), Query Frame = 3
Query:   87 EVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRG-MEVIKRLGSVQTDKDDRPIHDVKILRTSV 542
            +V L+T+ G   +EL+ K +P+ CRNF +L   GYY+N+ FHR++ +FI+Q            S++G  F DE    L+    G+++MANAGP+ NGSQFF TL  A  L+ KHTIFG+V    +  I RL  V   +D+RP++  KI  T V
Sbjct:   14 KVLLKTTAGEIDIELWSKEAPKACRNFVQLCLEGYYDNTIFHRVVPEFIIQGGDPTGTGTGGESVFGKPFRDEFHSRLRFNRRGLVAMANAGPHDNGSQFFFTLGRADELNNKHTIFGKVTGDTIYNILRLAEVDIGEDERPVNPHKIKCTEV 166          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: CYP10_CAEEL (Peptidyl-prolyl cis-trans isomerase 10 OS=Caenorhabditis elegans GN=cyn-10 PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.545e-28
Identity = 63/151 (41.72%), Postives = 86/151 (56.95%), Query Frame = 3
Query:   90 VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSV 542
            VTL T+ G   +ELY   +P+ C NF  L    YYN   FHR IKDF+VQ            SI+G  FEDE    LKH   G +SMAN GP++N SQFFIT    +HLD K+T+FG+V  G + ++ + +++ D   RP+   KI   ++
Sbjct:    3 VTLHTTSGDIKIELYVDDAPKACENFLALCASDYYNGCIFHRNIKDFMVQTGDPTHSGKGGESIWGGPFEDEFVSALKHDSRGCVSMANNGPDSNRSQFFITYAKQAHLDMKYTLFGKVIDGFDTLEEIETIKVDNKYRPLVQQKIQNVTI 153          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: CYP4_CAEEL (Peptidyl-prolyl cis-trans isomerase 4 OS=Caenorhabditis elegans GN=cyn-4 PE=2 SV=3)

HSP 1 Score: 124.79 bits (312), Expect = 4.495e-28
Identity = 64/152 (42.11%), Postives = 86/152 (56.58%), Query Frame = 3
Query:   90 VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDK-DDRPIHDVKILRTSV 542
            V L T+ G   +EL+    P+ C NF      GYYNN+KFHR+IK+F++Q            SI+   F DE      H   G+LSMAN G NTNGSQFFIT  P  +LD KHTIFGR+  G + +  +  ++T++  D P+  V I+R  V
Sbjct:  282 VRLVTNFGPLNLELFAPKVPKACENFITHCSNGYYNNTKFHRLIKNFMLQGGDPTGTGHGGESIWDKPFSDEFISGFSHDARGVLSMANKGSNTNGSQFFITFRPCKYLDRKHTIFGRLVGGQDTLTTIEKLETEEGTDVPMVSVVIMRAEV 433          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: PPIL3_CRYNE (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Cryptococcus neoformans GN=CYP10 PE=3 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.308e-27
Identity = 60/151 (39.74%), Postives = 88/151 (58.28%), Query Frame = 3
Query:   90 VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSV 542
            VTL T++G   +EL+ +  PRT  NF  L   G Y+ + FHR I+ F++Q            SI+G  F DEI+  L+    G+++MANAGP+TN SQFFIT      LDGK++IFG+V  GME +  +     +   RP+ ++K+L  +V
Sbjct:    3 VTLHTNLGDIKIELFCESVPRTAENFLALCASGQYDGTLFHRNIRGFMIQGGDPTGTGKGGQSIWGRPFSDEIRQTLRFNNRGMVAMANAGPDTNKSQFFITYAKQPSLDGKYSIFGKVIDGMETLDSMEKTPVNPKSRPLQEIKLLNVTV 153          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: PPIB_MOUSE (Peptidyl-prolyl cis-trans isomerase B OS=Mus musculus GN=Ppib PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.308e-27
Identity = 69/148 (46.62%), Postives = 93/148 (62.84%), Query Frame = 3
Query:   99 ETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKIL 530
            + S+G     L+ K  P+T  NF  L+   +G+ Y NSKFHR+IKDF++Q             SIYG  F DE   +LKH G G +SMANAG +TNGSQFFIT    S LDGKH +FG+V  GM+V++++ S +TD  D+P+ DV I+
Sbjct:   54 DESVGRVVFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKVESTKTDSRDKPLKDVIIV 200          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: PPIL2_CRYNE (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Cryptococcus neoformans GN=CYP8 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.231e-27
Identity = 64/153 (41.83%), Postives = 87/153 (56.86%), Query Frame = 3
Query:   93 TLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXXXXSIYGHVFEDEI--KPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSVQT-DKDDRPIHDVKILRTSV 542
            T+ T+ G   VEL+   +P+T  NF +L++ G Y+N  FHR+I  F+VQ            S +G  F DE   K   KH   G+LSMAN+GP TNGSQFF T  P  HLDGKHT+FG++  G E + ++  V      DRP+ D+ I   +V
Sbjct:  317 TITTNFGPLNVELHGDRAPKTVYNFVQLAKAGKYDNVVFHRLIPGFMVQGGDPTGTGRGGESYWGEPFRDEHGEKGAYKHDSRGVLSMANSGPRTNGSQFFFTFRPTPHLDGKHTVFGKLVGGEETLDKIERVNVRPGGDRPVRDIVIQGVTV 469          
The following BLAST results are available for this feature:
BLAST of FC931608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 258
Match NameE-valueIdentityDescription
PPIL2_SCHPO4.066e-2945.07Peptidyl-prolyl cis-trans isomerase cyp8 OS=Schizo... [more]
PPIL3_MOUSE5.310e-2944.90Peptidyl-prolyl cis-trans isomerase-like 3 OS=Mus ... [more]
PPIB_SCHJA5.310e-2946.71Peptidyl-prolyl cis-trans isomerase B OS=Schistoso... [more]
PPIL2_NEUCR6.935e-2944.22Peptidyl-prolyl cis-trans isomerase-like 2 OS=Neur... [more]
SDC10_XENLA9.057e-2941.83Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Xe... [more]
CYP10_CAEEL1.545e-2841.72Peptidyl-prolyl cis-trans isomerase 10 OS=Caenorha... [more]
CYP4_CAEEL4.495e-2842.11Peptidyl-prolyl cis-trans isomerase 4 OS=Caenorhab... [more]
PPIL3_CRYNE1.308e-2739.74Peptidyl-prolyl cis-trans isomerase-like 3 OS=Cryp... [more]
PPIB_MOUSE1.308e-2746.62Peptidyl-prolyl cis-trans isomerase B OS=Mus muscu... [more]
PPIL2_CRYNE2.231e-2741.83Peptidyl-prolyl cis-trans isomerase-like 2 OS=Cryp... [more]

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Properties
Property NameValue
Genbank descriptionC34107A08EF PostHarvP1 Citrus clementina cDNA clone C34107A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931608 ID=FC931608; Name=FC931608; organism=Citrus clementina; type=EST; length=705bp
GATCGTTGTTTCGTTTCTGAGTTTCTGATAGTGTTGTGGTCTTGAAAGCA
ACAATAAAGATGCTGGCAAGTGACGACGGTCCGCCGGAGGTCACTTTAGA
AACTTCCATGGGCTCTTTCACCGTCGAGCTTTACTACAAGCACTCTCCAA
GAACTTGCAGGAACTTTGCTGAACTATCTCGCAGAGGTTATTATAATAAC
AGCAAATTCCACAGAATTATTAAGGATTTTATAGTTCAAGGTGGAGATCC
TACCGGGACTGGAAGGGGAGGAGATTCCATATATGGCCATGTTTTCGAAG
ATGAAATAAAACCAGAATTAAAGCATACTGGAGCTGGGATCTTGTCCATG
GCAAATGCTGGTCCAAATACAAATGGAAGCCAGTTCTTTATCACTTTGAC
GCCTGCTTCACATCTGGATGGAAAGCACACTATATTTGGAAGAGTATGCA
GAGGAATGGAAGTGATCAAAAGGCTTGGCAGTGTCCAAACTGATAAAGAT
GACAGGCCCATCCATGACGTGAAGATACTACGGACTTCTGTTAAGGACTG
ATGCCATGAAACGGTTATGGAAACCAACGTTTCCACATGATTTTGGGTGC
ACTAGAGCCAGTGTTCAAAAATCTGATTCTGAAAATTTCTAACGTCTGAT
TTTGGATGCACTGTACTTTGGTATTTTATTGAACAGAAGGCAAATATGGA
TCATT
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