FC931608

Overview
NameFC931608
Unique NameFC931608
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15358 contig Ccv1_Contig15358:1..705. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: PPIB_RAT (Peptidyl-prolyl cis-trans isomerase B OS=Rattus norvegicus GN=Ppib PE=2 SV=3)

HSP 1 Score: 122.094 bits (305), Expect = 2.914e-27
Identity = 68/145 (46.90%), Postives = 92/145 (63.45%), Query Frame = 3
Query:  108 MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKIL 530
            +G  T  L+ K  P+T  NF  L+   +G+ Y NSKFHR+IKDF++Q             SIYG  F DE   +LKH G G +SMANAG +TNGSQFFIT    S LDGKH +FG+V  GM+V++++ + +TD  D+P+ DV I+
Sbjct:   57 VGRVTFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKVENTKTDSRDKPLKDVIIV 200          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: PPIC_BOVIN (Peptidyl-prolyl cis-trans isomerase C OS=Bos taurus GN=PPIC PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.805e-27
Identity = 70/154 (45.45%), Postives = 90/154 (58.44%), Query Frame = 3
Query:   99 ETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSVKD 548
            +  +G   + L+ K  P+T  NF  L+   +GY Y  SKFHR+IKDF++Q             SIYG  F DE   +LKH G G +SMANAGP+TNGSQFFITLT  + LDGKH +FG+V  GM V+  +    TD  DRP  D  I+ +   D
Sbjct:   48 DKDVGRIVIGLFGKVVPKTVENFVALATGEKGYGYKGSKFHRVIKDFMIQGGDFTRGDGTGGISIYGETFPDE-NFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPFTDCSIVNSGKID 200          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: PPIC_HUMAN (Peptidyl-prolyl cis-trans isomerase C OS=Homo sapiens GN=PPIC PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.491e-27
Identity = 69/154 (44.81%), Postives = 91/154 (59.09%), Query Frame = 3
Query:   99 ETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSVKD 548
            +  +G   + L+ K  P+T  NF  L+   +GY Y  SKFHR+IKDF++Q             SIYG  F DE   +LKH G G +SMANAGP+TNGSQFFITLT  + LDGKH +FG+V  GM V+  +    TD  DRP+ +  I+ +   D
Sbjct:   48 DKDVGRIVIGLFGKVVPKTVENFVALATGEKGYGYKGSKFHRVIKDFMIQGGDITTGDGTGGVSIYGETFPDE-NFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVIDGMTVVHSIELQATDGHDRPLTNCSIINSGKID 200          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: PPIB_HUMAN (Peptidyl-prolyl cis-trans isomerase B OS=Homo sapiens GN=PPIB PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 6.491e-27
Identity = 68/147 (46.26%), Postives = 91/147 (61.90%), Query Frame = 3
Query:   99 ETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKI 527
            +  +G     L+ K  P+T  NF  L+   +G+ Y NSKFHR+IKDF++Q             SIYG  F DE   +LKH G G +SMANAG +TNGSQFFIT    + LDGKH +FG+V  GMEV++++ S +TD  D+P+ DV I
Sbjct:   54 DEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVII 199          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: PPIL3_RHIOR (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Rhizopus oryzae GN=cyp4 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.477e-27
Identity = 63/158 (39.87%), Postives = 89/158 (56.33%), Query Frame = 3
Query:   90 VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXXXX------SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGME-VIKRLGSVQTDKDDRPIHDVKILRTSV 542
            VTL T +G   +E++ +  P+T  NF  L   GYY+N+ FHR I  F++Q                  SI+G  F DEI+  LKH   GI+SMAN+GPNTNGSQFFIT     HLD K+T+FG+V  G +  +  +  V  D+  RP+ + +I   ++
Sbjct:    3 VTLHTDLGDIKIEVFCEAVPKTAENFLALCASGYYDNNTFHRNIPGFMIQVHEHLHTGDPTGTGKGGNSIWGKKFNDEIRSTLKHNSRGIVSMANSGPNTNGSQFFITYAKHPHLDTKYTVFGKVIDGADSTLDMMEKVPVDEKHRPLQEFRIKSVTI 160          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: SDC10_BOVIN (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Bos taurus GN=SDCCAG10 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.107e-26
Identity = 63/148 (42.57%), Postives = 88/148 (59.46%), Query Frame = 3
Query:   87 EVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRG-MEVIKRLGSVQTDKDDRPIHDVKI 527
            +V L+T+ G   +EL+ K +P+ CRNF +L    YY+N+ FHR++  FIVQ            SIYG  F+DE    L+    G+++MANAGP+ NGSQFF TL  A  L+ KHTIFG+V    +  + RL  V  D ++RP +  KI
Sbjct:   14 KVLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTGTGGESIYGVPFKDEFHSRLRFNRRGLVAMANAGPHDNGSQFFFTLGRADELNNKHTIFGKVTGDTVYNMLRLTEVDIDDEERPRNSHKI 161          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: PPIB_EMENI (Peptidyl-prolyl cis-trans isomerase B OS=Emericella nidulans GN=cpr2 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.107e-26
Identity = 69/166 (41.57%), Postives = 98/166 (59.04%), Query Frame = 3
Query:   99 ETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSVKD*CHETVMETNVS 584
            + S+G   + LY K  P T  NF  L+   +G+ Y  S FHR+IKDF++Q             SIYG  F+DE   +L+HT  G+LSMANAG +TNGSQFFIT      LDGKH +FG V  G +++ ++ +V   ++DRP+ DVKI+++       E  ME +V+
Sbjct:   44 DESLGRIVLGLYGKTVPETAENFRALATGEKGFGYEGSNFHRVIKDFMIQGGDFTRGDGTGGKSIYGAKFKDE-NFKLRHTKTGLLSMANAGKDTNGSQFFITTAVTPWLDGKHVVFGEVLEGYDIVDKIQNVPKGRNDRPLKDVKIVKSG------ELEMEADVA 202          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: PPIB_SCHMA (Peptidyl-prolyl cis-trans isomerase B OS=Schistosoma mansoni GN=CYP PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.446e-26
Identity = 66/144 (45.83%), Postives = 85/144 (59.03%), Query Frame = 3
Query:  123 VELYYKHSPRTCRNFAELS--------RRGYYNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKI 527
            + L+ K  P+T  NF +LS        R   Y  S FHR+IK F++Q             SIYG  F DE   +L+H GAG LSMANAGP+TNGSQFFIT    S LDGKH +FG+V  GM +++++ S  TD  DRP+  +KI
Sbjct:   50 IGLFGKTVPKTVENFKQLSIGTQLKDGRTASYKGSTFHRVIKSFMIQGGDFTNHDGTGGFSIYGDRFPDE-NFKLRHVGAGWLSMANAGPDTNGSQFFITTVKTSWLDGKHVVFGKVVEGMNIVRQIESETTDSRDRPVKSIKI 192          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: PPIB_BOVIN (Peptidyl-prolyl cis-trans isomerase B OS=Bos taurus GN=PPIB PE=1 SV=4)

HSP 1 Score: 119.783 bits (299), Expect = 1.446e-26
Identity = 66/147 (44.90%), Postives = 92/147 (62.59%), Query Frame = 3
Query:   99 ETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKI 527
            +  +G   + L+ K  P+T  NF  L+   +G+ Y +SKFHR+IKDF++Q             SIYG  F DE   +LKH G G +SMANAG +TNGSQFFIT    + LDGKH +FG+V  GM+V++++ S +TD  D+P+ DV I
Sbjct:   54 DEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMDVVRKVESTKTDGRDKPLKDVTI 199          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: SDC10_HUMAN (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Homo sapiens GN=SDCCAG10 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.889e-26
Identity = 63/148 (42.57%), Postives = 87/148 (58.78%), Query Frame = 3
Query:   87 EVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRG-MEVIKRLGSVQTDKDDRPIHDVKI 527
            +V L+T+ G   +EL+ K +P+ CRNF +L    YY+N+ FHR++  FIVQ            SIYG  F+DE    L+    G+++MANAG + NGSQFF TL  A  L+ KHTIFG+V    +  + RL  V  D D+RP +  KI
Sbjct:   14 KVLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVTGDTVYNMLRLSEVDIDDDERPHNPHKI 161          
The following BLAST results are available for this feature:
BLAST of FC931608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 258
Match NameE-valueIdentityDescription
PPIB_RAT2.914e-2746.90Peptidyl-prolyl cis-trans isomerase B OS=Rattus no... [more]
PPIC_BOVIN3.805e-2745.45Peptidyl-prolyl cis-trans isomerase C OS=Bos tauru... [more]
PPIC_HUMAN6.491e-2744.81Peptidyl-prolyl cis-trans isomerase C OS=Homo sapi... [more]
PPIB_HUMAN6.491e-2746.26Peptidyl-prolyl cis-trans isomerase B OS=Homo sapi... [more]
PPIL3_RHIOR8.477e-2739.87Peptidyl-prolyl cis-trans isomerase-like 3 OS=Rhiz... [more]
SDC10_BOVIN1.107e-2642.57Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Bo... [more]
PPIB_EMENI1.107e-2641.57Peptidyl-prolyl cis-trans isomerase B OS=Emericell... [more]
PPIB_SCHMA1.446e-2645.83Peptidyl-prolyl cis-trans isomerase B OS=Schistoso... [more]
PPIB_BOVIN1.446e-2644.90Peptidyl-prolyl cis-trans isomerase B OS=Bos tauru... [more]
SDC10_HUMAN1.889e-2642.57Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Ho... [more]

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Properties
Property NameValue
Genbank descriptionC34107A08EF PostHarvP1 Citrus clementina cDNA clone C34107A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931608 ID=FC931608; Name=FC931608; organism=Citrus clementina; type=EST; length=705bp
GATCGTTGTTTCGTTTCTGAGTTTCTGATAGTGTTGTGGTCTTGAAAGCA
ACAATAAAGATGCTGGCAAGTGACGACGGTCCGCCGGAGGTCACTTTAGA
AACTTCCATGGGCTCTTTCACCGTCGAGCTTTACTACAAGCACTCTCCAA
GAACTTGCAGGAACTTTGCTGAACTATCTCGCAGAGGTTATTATAATAAC
AGCAAATTCCACAGAATTATTAAGGATTTTATAGTTCAAGGTGGAGATCC
TACCGGGACTGGAAGGGGAGGAGATTCCATATATGGCCATGTTTTCGAAG
ATGAAATAAAACCAGAATTAAAGCATACTGGAGCTGGGATCTTGTCCATG
GCAAATGCTGGTCCAAATACAAATGGAAGCCAGTTCTTTATCACTTTGAC
GCCTGCTTCACATCTGGATGGAAAGCACACTATATTTGGAAGAGTATGCA
GAGGAATGGAAGTGATCAAAAGGCTTGGCAGTGTCCAAACTGATAAAGAT
GACAGGCCCATCCATGACGTGAAGATACTACGGACTTCTGTTAAGGACTG
ATGCCATGAAACGGTTATGGAAACCAACGTTTCCACATGATTTTGGGTGC
ACTAGAGCCAGTGTTCAAAAATCTGATTCTGAAAATTTCTAACGTCTGAT
TTTGGATGCACTGTACTTTGGTATTTTATTGAACAGAAGGCAAATATGGA
TCATT
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