FC931608

Overview
NameFC931608
Unique NameFC931608
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15358 contig Ccv1_Contig15358:1..705. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: SDC10_MOUSE (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Mus musculus GN=Sdccag10 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.467e-26
Identity = 61/142 (42.96%), Postives = 85/142 (59.86%), Query Frame = 3
Query:   87 EVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRG-MEVIKRLGSVQTDKDDRP 509
            +V L+T+ G   +EL+ K +P+ CRNF +L    YY+N+ FHR++  FIVQ            SIYG  F+DE    L+    G+++MANAGP+ NGSQFF TL  A  L+ KHTIFG+V    +  + RL  V  D ++RP
Sbjct:   14 KVLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTGTGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGPHDNGSQFFFTLGRADELNNKHTIFGKVTGDTVYNMLRLTEVDIDDEERP 155          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: SDC10_RAT (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Rattus norvegicus GN=Sdccag10 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.221e-26
Identity = 60/142 (42.25%), Postives = 85/142 (59.86%), Query Frame = 3
Query:   87 EVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRG-MEVIKRLGSVQTDKDDRP 509
            +V L+T+ G   +EL+ K +P+ CRNF +L    YY+N+ FHR++  FIVQ            S+YG  F+DE    L+    G+++MANAGP+ NGSQFF TL  A  L+ KHTIFG+V    +  + RL  V  D ++RP
Sbjct:   14 KVLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTGTGGESVYGAPFKDEFHSRLRFNRRGLVAMANAGPHDNGSQFFFTLGRADELNNKHTIFGKVTGDTVYNMLRLTEVDIDDEERP 155          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: PPID_GIBZE (Peptidyl-prolyl cis-trans isomerase D OS=Gibberella zeae GN=CPR6 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.221e-26
Identity = 72/175 (41.14%), Postives = 94/175 (53.71%), Query Frame = 3
Query:   60 MLASDDGP--PEVTLETSMGS-----FTVELYYKHSPRTCRNFAEL--SRRG--------YYNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKIL 530
            M A  D P  P V  + S+G       T+ELY    P+T  NF  L    +G        +Y  S FHR+IK F++Q             SIYG+ F+DE  P +KH    +LSMANAGPNTNGSQFFIT  P  HLDGKH +FG V  G  V++++ ++ T   DRP  +  I+
Sbjct:    1 MAAEGDSPARPRVYFDISIGGKSVGRITMELYADLVPKTADNFRSLCTGEKGIGKSGKPLHYKGSVFHRVIKQFMIQGGDFTAGDGTGGESIYGNKFDDEAFP-IKHEKPFLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGEVLNGKSVVRQIENLTTQSGDRPAKEALIV 174          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: PPIB_ASPNG (Peptidyl-prolyl cis-trans isomerase B OS=Aspergillus niger GN=cypB PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.221e-26
Identity = 71/182 (39.01%), Postives = 100/182 (54.95%), Query Frame = 3
Query:   39 VLKATIKMLASDDGPPEVTLETSMGSFTVE------------LYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRT 536
            VL   + ++ ++D  P     TS   F +E            LY K  P+T  NF  L+   +G+ Y  S FHR+IKDF++Q             SIYG  F DE   +L+HT  G+LSMANAG +TNGSQFFIT  P   LDG+H +FG V  G E++ ++ +V   + DRP+  VKI+++
Sbjct:   13 VLAVGLALVHAEDAQPRGPKITSKVFFDIEHGDKPLGRVVLGLYGKTVPKTAENFRALATGEKGFGYEGSTFHRVIKDFMIQGGDFTRGDGTGGKSIYGEKFADE-NFKLRHTRKGLLSMANAGKDTNGSQFFITTVPTPWLDGRHVVFGEVLEGYEIVAQIENVPKGRSDRPVETVKIVKS 193          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: PPIB_ORPSP (Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyces sp. (strain PC-2) GN=CYPB PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.207e-26
Identity = 68/147 (46.26%), Postives = 89/147 (60.54%), Query Frame = 3
Query:   99 ETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKI 527
            +  +G   + LY +  P+T  NF  L+   +GY Y NSKFHR+IKDF++Q             SIYG  F DE   +L+HTG GILSMANAG +TNGSQFFIT    S LDG+H +FG+V  GM+V+  + + +T   DRP   V I
Sbjct:   40 DKDLGRIVLGLYGEVVPKTVENFRALATGEKGYGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFADE-NFKLRHTGPGILSMANAGRDTNGSQFFITTVTTSWLDGRHVVFGKVIEGMDVVTAIETTKTLPGDRPATPVII 185          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: PPIB_CHICK (Peptidyl-prolyl cis-trans isomerase B OS=Gallus gallus GN=PPIB PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.207e-26
Identity = 65/147 (44.22%), Postives = 90/147 (61.22%), Query Frame = 3
Query:   99 ETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKI 527
            E   G   + L+ K  P+T  NF  L+   +G+ +  SKFHR+IKDF++Q             SIYG  F DE   +LKH G G +SMANAG +TNGSQFFIT    + LDGKH +FG+V  GM+V++++ + +TD  D+P+ DV I
Sbjct:   45 EEDAGRVVIGLFGKTVPKTVENFVALATGEKGFGFKGSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGDRFPDE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMDVVRKVENTKTDSRDKPLKDVTI 190          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: SDC10_PONAB (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Pongo abelii GN=SDCCAG10 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.495e-26
Identity = 62/148 (41.89%), Postives = 87/148 (58.78%), Query Frame = 3
Query:   87 EVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRG-MEVIKRLGSVQTDKDDRPIHDVKI 527
            +V L+T+ G   +EL+ K +P+ CRNF +L    YY+N+ FHR++  FIVQ            SIYG  F+DE    L+    G+++MANAG + NGSQFF TL  A  L+ KHTIFG+V    +  + RL  V  D ++RP +  KI
Sbjct:   14 KVLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVTGDTVYNMLRLSEVDIDDEERPHNPHKI 161          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: SDC10_MACFA (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Macaca fascicularis GN=SDCCAG10 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.495e-26
Identity = 62/148 (41.89%), Postives = 87/148 (58.78%), Query Frame = 3
Query:   87 EVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRG-MEVIKRLGSVQTDKDDRPIHDVKI 527
            +V L+T+ G   +EL+ K +P+ CRNF +L    YY+N+ FHR++  FIVQ            SIYG  F+DE    L+    G+++MANAG + NGSQFF TL  A  L+ KHTIFG+V    +  + RL  V  D ++RP +  KI
Sbjct:   14 KVLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVTGDTVYNMLRLSEVDIDDEERPHNPHKI 161          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: CP20B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic OS=Arabidopsis thaliana GN=CYP20-2 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.495e-26
Identity = 65/143 (45.45%), Postives = 84/143 (58.74%), Query Frame = 3
Query:  111 GSFTVELYYKHSPRTCRNFAEL--SRRGY-YNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKI 527
            G   + LY    P+T  NF  L    +G+ Y  S FHR+I+DF++Q             S+YG  F+DE   +L H G G+LSMANAGPNTNGSQFFI     S LDG+H +FG+V  GMEV+K +   +TD+ DRP   V I
Sbjct:  107 GRIVIGLYGDDVPQTVENFRALCTGEKGFGYKGSTFHRVIRDFMIQGGDFEKGNGTGGKSVYGRTFKDE-NFKLSHVGPGVLSMANAGPNTNGSQFFICTIKTSWLDGRHVVFGQVIEGMEVVKLIEEQETDRGDRPRKKVVI 248          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: PPIL3_DICDI (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Dictyostelium discoideum GN=ppil3 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.373e-26
Identity = 60/144 (41.67%), Postives = 82/144 (56.94%), Query Frame = 3
Query:   90 VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDV 521
            VTL TS+G   VE++    P    NF  L    YYNN+ FHR IK F++Q            SI+   F+DE    LKH   GILSMAN+GP+TNGSQFFIT      L+  +T+FG++  G+EV+  +  V  D  D P++++
Sbjct:    3 VTLHTSLGDIKVEIFCDSVPLASENFLALCASNYYNNTIFHRNIKGFMIQGGDPTNTGRGGESIWKKQFKDEFPSHLKHNTRGILSMANSGPDTNGSQFFITYGKHRSLNKVYTVFGKIIAGIEVLDLMEKVPVDDKDLPLNEI 146          
The following BLAST results are available for this feature:
BLAST of FC931608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 258
Match NameE-valueIdentityDescription
SDC10_MOUSE2.467e-2642.96Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Mu... [more]
SDC10_RAT3.221e-2642.25Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Ra... [more]
PPID_GIBZE3.221e-2641.14Peptidyl-prolyl cis-trans isomerase D OS=Gibberell... [more]
PPIB_ASPNG3.221e-2639.01Peptidyl-prolyl cis-trans isomerase B OS=Aspergill... [more]
PPIB_ORPSP4.207e-2646.26Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyc... [more]
PPIB_CHICK4.207e-2644.22Peptidyl-prolyl cis-trans isomerase B OS=Gallus ga... [more]
SDC10_PONAB5.495e-2641.89Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Po... [more]
SDC10_MACFA5.495e-2641.89Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Ma... [more]
CP20B_ARATH5.495e-2645.45Peptidyl-prolyl cis-trans isomerase CYP20-2, chlor... [more]
PPIL3_DICDI9.373e-2641.67Peptidyl-prolyl cis-trans isomerase-like 3 OS=Dict... [more]

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Properties
Property NameValue
Genbank descriptionC34107A08EF PostHarvP1 Citrus clementina cDNA clone C34107A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931608 ID=FC931608; Name=FC931608; organism=Citrus clementina; type=EST; length=705bp
GATCGTTGTTTCGTTTCTGAGTTTCTGATAGTGTTGTGGTCTTGAAAGCA
ACAATAAAGATGCTGGCAAGTGACGACGGTCCGCCGGAGGTCACTTTAGA
AACTTCCATGGGCTCTTTCACCGTCGAGCTTTACTACAAGCACTCTCCAA
GAACTTGCAGGAACTTTGCTGAACTATCTCGCAGAGGTTATTATAATAAC
AGCAAATTCCACAGAATTATTAAGGATTTTATAGTTCAAGGTGGAGATCC
TACCGGGACTGGAAGGGGAGGAGATTCCATATATGGCCATGTTTTCGAAG
ATGAAATAAAACCAGAATTAAAGCATACTGGAGCTGGGATCTTGTCCATG
GCAAATGCTGGTCCAAATACAAATGGAAGCCAGTTCTTTATCACTTTGAC
GCCTGCTTCACATCTGGATGGAAAGCACACTATATTTGGAAGAGTATGCA
GAGGAATGGAAGTGATCAAAAGGCTTGGCAGTGTCCAAACTGATAAAGAT
GACAGGCCCATCCATGACGTGAAGATACTACGGACTTCTGTTAAGGACTG
ATGCCATGAAACGGTTATGGAAACCAACGTTTCCACATGATTTTGGGTGC
ACTAGAGCCAGTGTTCAAAAATCTGATTCTGAAAATTTCTAACGTCTGAT
TTTGGATGCACTGTACTTTGGTATTTTATTGAACAGAAGGCAAATATGGA
TCATT
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