FC931608

Overview
NameFC931608
Unique NameFC931608
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15358 contig Ccv1_Contig15358:1..705. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: PPIC_MOUSE (Peptidyl-prolyl cis-trans isomerase C OS=Mus musculus GN=Ppic PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.373e-26
Identity = 68/154 (44.16%), Postives = 89/154 (57.79%), Query Frame = 3
Query:   99 ETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSVKD 548
            +  +G   + L+    P+T  NF  L+   +GY Y  S FHR+IKDF++Q             SIYG  F DE   +LKH G G +SMANAGP+TNGSQFFITLT  + LDGKH +FG+V  GM V+  +    TD  DRP+ D  I+ +   D
Sbjct:   48 DKDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQGGDFTARDGTGGMSIYGETFPDE-NFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGKID 200          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: PPIB_ARTBE (Peptidyl-prolyl cis-trans isomerase B OS=Arthroderma benhamiae GN=CPR2 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.224e-25
Identity = 66/151 (43.71%), Postives = 89/151 (58.94%), Query Frame = 3
Query:  108 MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSVKD 548
            +G   + LY K  P+T  NF  L+   +G+ Y  S FHR+IKDF++Q             SIYG+ FEDE   +L+HT  G+LSMANAG +TNGSQFFIT    + LDGKH +FG V  G +++ ++  V     DRP  DVKI++    D
Sbjct:   48 LGRIVMGLYGKTVPKTAENFRALATGEKGFGYEGSTFHRVIKDFMIQGGDFTNGDGTGGKSIYGNKFEDE-NFKLRHTKKGVLSMANAGKDTNGSQFFITTAITAWLDGKHVVFGEVLEGYDIVDKIQVVPKGFQDRPTKDVKIVKCGELD 197          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: CYP6_CAEEL (Peptidyl-prolyl cis-trans isomerase 6 OS=Caenorhabditis elegans GN=cyn-6 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.224e-25
Identity = 64/144 (44.44%), Postives = 88/144 (61.11%), Query Frame = 3
Query:  108 MGSFTVELYYKHSPRTCRNFAELSRRGY---YNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKI 527
            +G   + L+ +  P+T +NF EL++R     Y  SKFHR+I++F++Q             SIYG  FEDE   +L+H G G LSMANAG +TNGSQFFIT    S LDGKH +FG++  GM+V++ + +      DRPI DV I
Sbjct:   39 VGKIVIGLFGEVVPKTVKNFVELAQRAEGEGYVGSKFHRVIENFMIQGGDFTRGDGTGGRSIYGERFEDE-NFKLQHYGPGWLSMANAGEDTNGSQFFITTAKTSWLDGKHVVFGKILEGMDVVREIEATPKGAGDRPIEDVVI 181          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: CYP1_BRUMA (Peptidyl-prolyl cis-trans isomerase 1 OS=Brugia malayi GN=CYP-1 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.224e-25
Identity = 66/161 (40.99%), Postives = 96/161 (59.63%), Query Frame = 3
Query:   87 EVTLETSM-GSFTVELYYKHSPRTCRNFAEL-----------SRRGYYNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKIL 530
            +VT++ ++ G   +ELY   +PRTC NF  L            +  +Y  S FHR+IK+F++Q             SIYG +F+DE +  +KH    ++SMAN GPNTNGSQFFIT TPA HL+  H +FG+V  G EV+ ++  ++T+  +RP+ DV IL
Sbjct:   12 DVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDE-EFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVIL 171          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: PPID_USTMA (Peptidyl-prolyl cis-trans isomerase D OS=Ustilago maydis GN=CPR6 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.727e-25
Identity = 74/172 (43.02%), Postives = 93/172 (54.07%), Query Frame = 3
Query:   78 GPPEVTLETSMGS----------FTVELYYKHSPRTCRNF-------AELSRRGY---YNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKIL 530
            G P V L+ + GS            +ELY    PRT  NF       ++L+  G    + NS FHR+I  F++Q             SIYG  F+DE     KH    +LSMANAG NTNGSQFFIT  P  HLDGKH +FGRV +G  V++R+ SV+T   DRP  DVKI+
Sbjct:   11 GNPIVYLDLAFGSSPASRPGSNRIVLELYADRVPRTAENFRVLCTNTSKLASTGQPLSFRNSIFHRVIPKFMIQGGDFTRADGTGGESIYGEKFQDEDLTG-KHDVPFLLSMANAGANTNGSQFFITTVPTPHLDGKHVVFGRVLKGKGVVRRVESVETVASDRPKEDVKIV 181          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: PPID_CANGA (Peptidyl-prolyl cis-trans isomerase D OS=Candida glabrata GN=CPR6 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.727e-25
Identity = 69/156 (44.23%), Postives = 85/156 (54.49%), Query Frame = 3
Query:  102 TSMGSFTVELYYKHSPRTCRNFAEL--SRRGY----------YNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSVQT-DKDDRPIHDVKI 527
            T  G    ELY    P+T  NF +L   + G           Y  S FHR+IKDF++Q             SIYG  FEDE   E+KH    +LSMANAGPNTNGSQ FIT  P  HLDGKH +FG V  G  +++ +   QT D  D+P+HDVK+
Sbjct:   15 TPKGRIVFELYKDVVPKTAENFLKLCEGKSGMAKSKPDVPLSYKGSIFHRVIKDFMIQFGDFTNFDGTGGESIYGEKFEDE-NFEIKHDKPFLLSMANAGPNTNGSQAFITCVPTPHLDGKHVVFGEVIEGKRLVRLIEKQQTEDGTDKPMHDVKV 169          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: PPIB_GIBZE (Peptidyl-prolyl cis-trans isomerase B OS=Gibberella zeae GN=CPR2 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.727e-25
Identity = 67/151 (44.37%), Postives = 90/151 (59.60%), Query Frame = 3
Query:  108 MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSVKD 548
            +G   + LY K  P T  NF  L+   +G+ Y  S FHR+IK+F++Q             SIYG  F+DE   +LKHT  G+LSMANAG +TNGSQFFIT    S LDGKH +FG V  G E+I+++ + +T   DRP+  VKI ++   D
Sbjct:   48 LGRVVMGLYGKTVPETTENFRALATGEKGFGYEGSAFHRVIKNFMIQGGDFTKGDGTGGKSIYGDRFKDE-NFKLKHTKKGLLSMANAGRDTNGSQFFITTVVTSWLDGKHVVFGEVLEGYEIIEKIENSKTGAADRPVEAVKIAKSGELD 197          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: CYP40_ARATH (Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabidopsis thaliana GN=CYP40 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.562e-25
Identity = 67/151 (44.37%), Postives = 86/151 (56.95%), Query Frame = 3
Query:  111 GSFTVELYYKHSPRTCRNFAEL--SRRG---------YYNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKI 527
            G   +ELY    P+T  NF  L    +G         +Y  ++FHR+IK F++Q             SIYG  F+DE   ELKH   G+LSMAN+GPNTNGSQFFIT T  SHLDGKH +FGRV +GM V++ +  V  ++   P  DV I
Sbjct:   18 GRIVIELYDDVVPKTAENFRLLCTGEKGLGPNTGVPLHYKGNRFHRVIKGFMIQGGDISANDGTGGESIYGLKFDDE-NFELKHERKGMLSMANSGPNTNGSQFFITTTRTSHLDGKHVVFGRVTKGMGVVRSIEHVSIEEQSCPSQDVVI 167          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: CWC27_RHIOR (Peptidyl-prolyl isomerase cwc27 OS=Rhizopus oryzae GN=cwc27 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.652e-25
Identity = 58/153 (37.91%), Postives = 88/153 (57.52%), Query Frame = 3
Query:   87 EVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRG-MEVIKRLGSVQTDKDDRPIHDVKILRTSV 542
            +V L T+ G   +EL+ K +PR  RNF +L   GYY+N+ FHRI+  F+VQ            S+Y   F DE    L+    G++ +AN G N NGSQFFITL  A  L  +HT+FGRV    +  + ++  ++ D+++RP++  +I RT +
Sbjct:   14 KVILHTTSGDIEIELWGKEAPRATRNFIQLCLEGYYDNTIFHRIVPGFLVQGGDPTGTGQGGESVYEDGFPDEFHSRLRFNRRGLVGVANTGQNDNGSQFFITLDRADELTKRHTLFGRVAGDTLFNVMKMTELEIDENERPLYPPRIKRTEI 166          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: PPIL4_HUMAN (Peptidyl-prolyl cis-trans isomerase-like 4 OS=Homo sapiens GN=PPIL4 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.935e-25
Identity = 61/161 (37.89%), Postives = 86/161 (53.42%), Query Frame = 3
Query:   90 VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXXXXSIYGHV-------FEDEIKPELKHTGAGILSMANAGPNTNGSQFFITL-TPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSVKD 548
            V LET++G   ++LY +  PR C NF +L +  YYN    H + +DFI+Q            SI+G +       FE E  P +KH   G +SM N G + +GSQF IT      +LDG HT+FG V  GM++IK++     DKD  P  D++I  T + D
Sbjct:    3 VLLETTLGDVVIDLYTEERPRACLNFLKLCKIKYYNYCLIHNVQRDFIIQTGDPTGTGRGGESIFGQLYGDQASFFEAEKVPRIKHKKKGTVSMVNNGSDQHGSQFLITTGENLDYLDGVHTVFGEVTEGMDIIKKINETFVDKDFVPYQDIRINHTVILD 163          
The following BLAST results are available for this feature:
BLAST of FC931608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 258
Match NameE-valueIdentityDescription
PPIC_MOUSE9.373e-2644.16Peptidyl-prolyl cis-trans isomerase C OS=Mus muscu... [more]
PPIB_ARTBE1.224e-2543.71Peptidyl-prolyl cis-trans isomerase B OS=Arthroder... [more]
CYP6_CAEEL1.224e-2544.44Peptidyl-prolyl cis-trans isomerase 6 OS=Caenorhab... [more]
CYP1_BRUMA1.224e-2540.99Peptidyl-prolyl cis-trans isomerase 1 OS=Brugia ma... [more]
PPID_USTMA2.727e-2543.02Peptidyl-prolyl cis-trans isomerase D OS=Ustilago ... [more]
PPID_CANGA2.727e-2544.23Peptidyl-prolyl cis-trans isomerase D OS=Candida g... [more]
PPIB_GIBZE2.727e-2544.37Peptidyl-prolyl cis-trans isomerase B OS=Gibberell... [more]
CYP40_ARATH3.562e-2544.37Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabi... [more]
CWC27_RHIOR4.652e-2537.91Peptidyl-prolyl isomerase cwc27 OS=Rhizopus oryzae... [more]
PPIL4_HUMAN7.935e-2537.89Peptidyl-prolyl cis-trans isomerase-like 4 OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionC34107A08EF PostHarvP1 Citrus clementina cDNA clone C34107A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931608 ID=FC931608; Name=FC931608; organism=Citrus clementina; type=EST; length=705bp
GATCGTTGTTTCGTTTCTGAGTTTCTGATAGTGTTGTGGTCTTGAAAGCA
ACAATAAAGATGCTGGCAAGTGACGACGGTCCGCCGGAGGTCACTTTAGA
AACTTCCATGGGCTCTTTCACCGTCGAGCTTTACTACAAGCACTCTCCAA
GAACTTGCAGGAACTTTGCTGAACTATCTCGCAGAGGTTATTATAATAAC
AGCAAATTCCACAGAATTATTAAGGATTTTATAGTTCAAGGTGGAGATCC
TACCGGGACTGGAAGGGGAGGAGATTCCATATATGGCCATGTTTTCGAAG
ATGAAATAAAACCAGAATTAAAGCATACTGGAGCTGGGATCTTGTCCATG
GCAAATGCTGGTCCAAATACAAATGGAAGCCAGTTCTTTATCACTTTGAC
GCCTGCTTCACATCTGGATGGAAAGCACACTATATTTGGAAGAGTATGCA
GAGGAATGGAAGTGATCAAAAGGCTTGGCAGTGTCCAAACTGATAAAGAT
GACAGGCCCATCCATGACGTGAAGATACTACGGACTTCTGTTAAGGACTG
ATGCCATGAAACGGTTATGGAAACCAACGTTTCCACATGATTTTGGGTGC
ACTAGAGCCAGTGTTCAAAAATCTGATTCTGAAAATTTCTAACGTCTGAT
TTTGGATGCACTGTACTTTGGTATTTTATTGAACAGAAGGCAAATATGGA
TCATT
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