FC931608

Overview
NameFC931608
Unique NameFC931608
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15358 contig Ccv1_Contig15358:1..705. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: PPIL3_USTMA (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Ustilago maydis GN=CYP10 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.938e-24
Identity = 60/154 (38.96%), Postives = 86/154 (55.84%), Query Frame = 3
Query:   90 VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGME---VIKRLGSVQTDKDDRPIHDVKILRTSV 542
            VTL T++G   VE++   +PR   NF      G YN+ K+HR IK F++Q            SI+G  F DEI+  LK    GI++ ANAGP+TN SQFFIT     HLDGK+TI G+V  G E    +  + ++  D  +RP  ++++   +V
Sbjct:    3 VTLHTNVGDIKVEVFCDATPRAAENFLGHCAAGTYNDVKWHRNIKSFMIQTGDPTGTGKGGQSIWGKPFADEIRSSLKFDRRGIVACANAGPDTNKSQFFITYAKQPHLDGKYTIIGKVIDGAEDGGTLDAMEAIPVDAKNRPTSEIRMTGVTV 156          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: PPID_SCHPO (40 kDa peptidyl-prolyl cis-trans isomerase OS=Schizosaccharomyces pombe GN=wis2 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.938e-24
Identity = 62/134 (46.27%), Postives = 80/134 (59.70%), Query Frame = 3
Query:  126 ELYYKHSPRTCRNFAEL-------SRRGYYNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDD 503
            EL+    P+T +NFA L        R   Y  S+FHR+IK+F++Q             SIYG  FEDE   ELKH    +LSMANAGPNTNGSQFFIT  P  HLDGKH +FG+V +G   ++ + +++T  DD
Sbjct:   22 ELFDNVVPKTVKNFASLCNGFEKDGRCLTYKGSRFHRVIKNFMLQGGDFTRGNGTGGESIYGEKFEDE-NFELKHDKPFLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGKVIQGKSTVRTIENLETKNDD 154          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: PPIB_TREPA (Probable peptidyl-prolyl cis-trans isomerase OS=Treponema pallidum GN=ppiB PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.717e-24
Identity = 67/165 (40.61%), Postives = 90/165 (54.55%), Query Frame = 3
Query:   63 LASDDGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSR--------RGYYNNSKFHRIIKDFIVQXXXXXXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILR 533
            LA  DG   V +ET+ G+  + L+++ +P T  NF  L+         R +Y    FHR+IKDF++Q               G+ F DE  P L+H   G+LSMANAGP TNGSQFFIT      LDGKHT+FG+V  GMEV+  + +  T      I  +KI+R
Sbjct:   34 LAVADGIYAV-METNRGTIVLSLFFEKAPLTVCNFVGLAEGTLAVCKGRPFYQGLTFHRVIKDFMIQGGDPQGNGTGGP---GYQFPDECDPALRHDSPGVLSMANAGPGTNGSQFFITHVATPWLDGKHTVFGKVVEGMEVVHAIIAGDT------IRSLKIVR 188          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: CYP9_CAEBR (Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhabditis briggsae GN=cyn-9 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 6.717e-24
Identity = 60/158 (37.97%), Postives = 87/158 (55.06%), Query Frame = 3
Query:   99 ETSMGSFTVELYYKHSPRTCRNFAEL-----------SRRGYYNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRT 536
            E  +G   ++L+   +P+TC NF  L             R +Y  ++ HR++K F++Q             SIYG  F+DE K  LKH+   +LSMAN GPN+N SQFFIT  PA H +GKH +FG V +G EV+  L +++ D   +PI  V+I  +
Sbjct:   16 EKPIGRIEIKLFTSEAPKTCENFRALCTGEVGMAPNNKARLHYKGNEIHRVVKKFMIQGGDITDGDGRGGFSIYGRYFDDE-KFVLKHSKPYLLSMANKGPNSNSSQFFITTAPAPHCNGKHVVFGEVIKGREVVDVLDNLEVDGKSKPIAKVRIFNS 172          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: PPIB1_RHIOR (Peptidyl-prolyl cis-trans isomerase B1 OS=Rhizopus oryzae GN=cyp8 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.773e-24
Identity = 64/147 (43.54%), Postives = 86/147 (58.50%), Query Frame = 3
Query:   99 ETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKI 527
            + S+G   + LY K  P+T  NF +L+    GY Y  S FHR+IK F++Q             SIYG+ F DE   +L+H+  G+LSMANAG +TNGSQFFIT      LDGKH +FGRV  GM+V+ ++ +  T    +P  DV I
Sbjct:   44 DESLGRIVLGLYGKTVPKTAENFKQLATGENGYGYKGSTFHRVIKKFMIQGGDFTNHDGTGGKSIYGNRFADE-NFKLRHSTPGLLSMANAGRDTNGSQFFITTVVTPWLDGKHVVFGRVLEGMDVVTKIENTPTGSRSKPSVDVVI 189          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: CP20C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-3, chloroplastic OS=Arabidopsis thaliana GN=CYP20-3 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.773e-24
Identity = 65/137 (47.45%), Postives = 80/137 (58.39%), Query Frame = 3
Query:  111 GSFTVELYYKHSPRTCRNFAEL---SRRGYYNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRP 509
            G   + L+ +  P+T  NF  L    ++  Y  S FHRIIKDF++Q             SIYG  FEDE    LKHTG GILSMANAGPNTNGSQFFI     S LD KH +FG+V  GM++++ L S +T   D P
Sbjct:  109 GRIVMGLFGEVVPKTVENFRALCTGEKKYGYKGSSFHRIIKDFMIQGGDFTEGNGTGGISIYGAKFEDE-NFTLKHTGPGILSMANAGPNTNGSQFFICTVKTSWLDNKHVVFGQVIEGMKLVRTLESQETRAFDVP 244          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: PPIB_NEUCR (Peptidyl-prolyl cis-trans isomerase B OS=Neurospora crassa GN=cpr-2 PE=3 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 1.496e-23
Identity = 62/147 (42.18%), Postives = 86/147 (58.50%), Query Frame = 3
Query:  108 MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRT 536
            +G   + LY K  P+T  NF  L+   +G+ Y  S FHR+IK F++Q             SIYG  F DE   +LKH+  G+LSMANAG +TNGSQFFIT    S LDGKH +FG V  G +V++++ + +T   D P   +KI ++
Sbjct:   48 LGRIVMGLYGKTVPKTAENFRALATGEKGFGYEGSTFHRVIKQFMIQGGDFTKGDGTGGKSIYGDKFPDE-NFKLKHSKKGLLSMANAGKDTNGSQFFITTVITSWLDGKHVVFGEVLEGYDVVEKIENTKTGPRDAPAEPIKIAKS 193          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: PPIB_CRYNE (Peptidyl-prolyl cis-trans isomerase B OS=Cryptococcus neoformans GN=CPR2 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.496e-23
Identity = 63/150 (42.00%), Postives = 85/150 (56.67%), Query Frame = 3
Query:  108 MGSFTVELYYKHSPRTCRNFAELSRR--------GY-YNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKI 527
            +G   + LY K  P+T  NF  L+          GY Y  S FHRIIK+F++Q             SIYG  F DE   +LKHTG G+LSMANAG +TNGSQFFI     + LD +H +FG V  GM+V+  + +V+T + D+P+  + I
Sbjct:   58 LGRIVMGLYGKTVPKTAENFRALATGKNSDGEDLGYGYEGSSFHRIIKNFMIQGGDFTKGDGTGGKSIYGSKFPDE-NFKLKHTGPGVLSMANAGRDTNGSQFFICTVKTAWLDNRHVVFGHVLEGMDVVYAMENVKTSRGDKPVEPITI 206          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: NKTR_MOUSE (NK-tumor recognition protein OS=Mus musculus GN=Nktr PE=1 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 2.552e-23
Identity = 63/157 (40.13%), Postives = 88/157 (56.05%), Query Frame = 3
Query:  108 MGSFTVELYYKHSPRTCRNFAEL-----------SRRGYYNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSV 542
            +G    +L+    P+TC+NF  L            ++  Y  S FHR++K+F++Q             SIYG  F+DE    LKH  A +LSMAN G +TNGSQFFIT  PA HLDG H +FG V  G EVI+++ +++TD   RP  DV+++   V
Sbjct:   20 VGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDE-NFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGV 175          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: NKTR_HUMAN (NK-tumor recognition protein OS=Homo sapiens GN=NKTR PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.552e-23
Identity = 63/157 (40.13%), Postives = 88/157 (56.05%), Query Frame = 3
Query:  108 MGSFTVELYYKHSPRTCRNFAEL-----------SRRGYYNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSV 542
            +G    +L+    P+TC+NF  L            ++  Y  S FHR++K+F++Q             SIYG  F+DE    LKH  A +LSMAN G +TNGSQFFIT  PA HLDG H +FG V  G EVI+++ +++TD   RP  DV+++   V
Sbjct:   20 VGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDE-NFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGV 175          
The following BLAST results are available for this feature:
BLAST of FC931608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 258
Match NameE-valueIdentityDescription
PPIL3_USTMA3.938e-2438.96Peptidyl-prolyl cis-trans isomerase-like 3 OS=Usti... [more]
PPID_SCHPO3.938e-2446.2740 kDa peptidyl-prolyl cis-trans isomerase OS=Schi... [more]
PPIB_TREPA6.717e-2440.61Probable peptidyl-prolyl cis-trans isomerase OS=Tr... [more]
CYP9_CAEBR6.717e-2437.97Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhab... [more]
PPIB1_RHIOR8.773e-2443.54Peptidyl-prolyl cis-trans isomerase B1 OS=Rhizopus... [more]
CP20C_ARATH8.773e-2447.45Peptidyl-prolyl cis-trans isomerase CYP20-3, chlor... [more]
PPIB_NEUCR1.496e-2342.18Peptidyl-prolyl cis-trans isomerase B OS=Neurospor... [more]
PPIB_CRYNE1.496e-2342.00Peptidyl-prolyl cis-trans isomerase B OS=Cryptococ... [more]
NKTR_MOUSE2.552e-2340.13NK-tumor recognition protein OS=Mus musculus GN=Nk... [more]
NKTR_HUMAN2.552e-2340.13NK-tumor recognition protein OS=Homo sapiens GN=NK... [more]

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Properties
Property NameValue
Genbank descriptionC34107A08EF PostHarvP1 Citrus clementina cDNA clone C34107A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931608 ID=FC931608; Name=FC931608; organism=Citrus clementina; type=EST; length=705bp
GATCGTTGTTTCGTTTCTGAGTTTCTGATAGTGTTGTGGTCTTGAAAGCA
ACAATAAAGATGCTGGCAAGTGACGACGGTCCGCCGGAGGTCACTTTAGA
AACTTCCATGGGCTCTTTCACCGTCGAGCTTTACTACAAGCACTCTCCAA
GAACTTGCAGGAACTTTGCTGAACTATCTCGCAGAGGTTATTATAATAAC
AGCAAATTCCACAGAATTATTAAGGATTTTATAGTTCAAGGTGGAGATCC
TACCGGGACTGGAAGGGGAGGAGATTCCATATATGGCCATGTTTTCGAAG
ATGAAATAAAACCAGAATTAAAGCATACTGGAGCTGGGATCTTGTCCATG
GCAAATGCTGGTCCAAATACAAATGGAAGCCAGTTCTTTATCACTTTGAC
GCCTGCTTCACATCTGGATGGAAAGCACACTATATTTGGAAGAGTATGCA
GAGGAATGGAAGTGATCAAAAGGCTTGGCAGTGTCCAAACTGATAAAGAT
GACAGGCCCATCCATGACGTGAAGATACTACGGACTTCTGTTAAGGACTG
ATGCCATGAAACGGTTATGGAAACCAACGTTTCCACATGATTTTGGGTGC
ACTAGAGCCAGTGTTCAAAAATCTGATTCTGAAAATTTCTAACGTCTGAT
TTTGGATGCACTGTACTTTGGTATTTTATTGAACAGAAGGCAAATATGGA
TCATT
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