FC931608

Overview
NameFC931608
Unique NameFC931608
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15358 contig Ccv1_Contig15358:1..705. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: PPIH_USTMA (Peptidyl-prolyl cis-trans isomerase H (Fragment) OS=Ustilago maydis GN=CYP3 PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.334e-23
Identity = 65/151 (43.05%), Postives = 83/151 (54.97%), Query Frame = 3
Query:  102 TSMGSFTVELYYKHSPRTCRNFAELSRRGY--------YNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKI 527
            T  G    EL+    PRT  NF +L    +        Y NS FHRIIKDF+ Q             SIYG  F+DE    LKH  AG+LSMAN+GP TNG QFFIT  P   LDGKH +FG+V  G+  ++++ +V T  ++RP   V+I
Sbjct:    1 TPAGRLKCELFSDIVPRTSENFRQLCTGEFRPNHVPEGYKNSIFHRIIKDFMCQGGDFINADGTGSRSIYGDKFDDE-NFTLKHDKAGLLSMANSGPGTNGCQFFITAQPCPFLDGKHVVFGKVVDGLLTLRKMENVPTGANNRPKMAVRI 150          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: CYP11_CAEEL (Peptidyl-prolyl cis-trans isomerase 11 OS=Caenorhabditis elegans GN=cyn-11 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.334e-23
Identity = 60/143 (41.96%), Postives = 80/143 (55.94%), Query Frame = 3
Query:  108 MGSFTVELYYKHSPRTCRNFAELSRRGY--------YNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRP 509
            +G+  +EL+   +PRT  NF +     Y        Y N  FHR+IKDF++Q             SIYG  F DE   ELKH G G+LSMANAG +TNG QFFIT      LD KH +FGRV  GM  ++++ +V T  +++P
Sbjct:   30 IGTIVIELFADVTPRTAENFRQFCTGEYKKDGVPNGYKNCTFHRVIKDFMIQGGDFCNGDGTGLMSIYGSKFRDE-NFELKHIGPGMLSMANAGSDTNGCQFFITCAKTDFLDNKHVVFGRVLDGMLTVRKIENVPTGANNKP 171          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: PPIA_BLAGE (Peptidyl-prolyl cis-trans isomerase OS=Blattella germanica GN=CYPA PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.354e-23
Identity = 69/154 (44.81%), Postives = 88/154 (57.14%), Query Frame = 3
Query:   69 SDDGPPEVTLETSMGSFTVELYYKHSPRTCRNFAEL--SRRGY-YNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSV--QTDKDDRPI 512
            S DG P       +G   +EL     P+T  NF  L    +G+ Y  S+FHR+I +F+ Q             SIYG  FEDE   +LKHTG GIL MANAGPNTNGSQFFIT    S LD +H +FG V  GM+V+K+L S+  Q+ K ++ I
Sbjct:   11 SADGQP-------VGRIVMELRSDVVPKTAENFRALCTGEKGFGYKGSRFHRVIPNFMCQGGDFTNHNGTGGKSIYGTKFEDE-NFQLKHTGPGILWMANAGPNTNGSQFFITTAKTSWLDNRHVVFGSVVEGMDVVKKLESLGSQSGKTNKKI 156          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: PPIH_ASPOR (Peptidyl-prolyl cis-trans isomerase H OS=Aspergillus oryzae GN=cyp3 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.686e-23
Identity = 64/154 (41.56%), Postives = 89/154 (57.79%), Query Frame = 3
Query:  105 SMGSFTVELYYKHSPRTCRNFAEL---------SRRGYYNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHV-FEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILR 533
            S+G   +EL+   +PRT  NF +           R   Y NSKFHR+IKDF++Q             +IYG   F+DE    LKH   G+LSMAN+GPNTNG QFFIT T    L+ KH +FG+V  GM+V++ + + +T + D+P  DV I++
Sbjct:   26 SLGRIKMELFTSITPRTAENFRQFCTGESKSPQGRPQGYKNSKFHRVIKDFMIQGGDFVNGDGTGSRTIYGTPRFQDE-NFILKHDQPGLLSMANSGPNTNGCQFFITTTATPFLNNKHVVFGQVVEGMDVVRMIENTRTTR-DKPNQDVTIIQ 177          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: PPID_YARLI (Peptidyl-prolyl cis-trans isomerase D OS=Yarrowia lipolytica GN=CPR6 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.686e-23
Identity = 65/165 (39.39%), Postives = 87/165 (52.73%), Query Frame = 3
Query:   84 PEVTLETSMGSFTV-----ELYYKHSPRTCRNFAEL--SRRG--------YYNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKIL 530
            P V  E ++G  T+     EL+    P+T  NF  L    +G        ++  S FHR+IKDF+VQ             SIYG  F DE  P   H    +LSMANAGPNTNGSQFFIT T   HLD KH +FG++  G  +++++   +T + DRP   V I+
Sbjct:    4 PRVFFEVAIGGKTIGKIYFELFADKVPKTAENFRALCTGEKGNTQAGIPLHFKGSSFHRVIKDFMVQGGDFTAGNGTGGESIYGEKFPDEAFP-YPHDQPFLLSMANAGPNTNGSQFFITTTETPHLDNKHVVFGKLLSGKGIVRQIERTETGEQDRPKQPVTIV 167          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: PPID_RHIOR (Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus oryzae GN=cyp12 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.686e-23
Identity = 66/152 (43.42%), Postives = 83/152 (54.61%), Query Frame = 3
Query:  111 GSFTVELYYKHSPRTCRNFAEL--SRRGY--------YNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILR 533
            G    EL+    P+T  NF  L    +G         Y  S FHRIIK+F++Q             SIYG  FEDE    LKH    +LSMANAGP TNGSQFFIT  P  HLDGKH +FG+V +G  V++ L +++T   DRP+ D  I +
Sbjct:   18 GRIVFELFKDIVPKTAENFRALCTGEKGEGKSGKPLSYQGSLFHRIIKNFMIQGGDFTAGNGTGGESIYGEKFEDE-NFVLKHEKPFLLSMANAGPGTNGSQFFITTVPTPHLDGKHVVFGKVLKGKAVVRALENLET-VSDRPVEDAVIAK 167          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: CYPR_DROME (Peptidyl-prolyl cis-trans isomerase, rhodopsin-specific isozyme OS=Drosophila melanogaster GN=ninaA PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.686e-23
Identity = 61/146 (41.78%), Postives = 81/146 (55.48%), Query Frame = 3
Query:  108 MGSFTVELYYKHSPRTCRNFAELSRRGY----YNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKP-ELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKI 527
            +G  T  L+ K +P+T  NF  +  RG     Y  S+FHR++  F+VQ             SIYG  F DE K   ++H   G L MAN GP+TNG QF++T   A  LDGKHT+FG+V  GM+ I  +  V+TD DD P+  V I
Sbjct:   40 VGRITFGLFGKLAPKTVANFRHICLRGINGTSYVGSRFHRVVDRFLVQGGDIVNGDGTGSISIYGDYFPDEDKALAVEHNRPGYLGMANRGPDTNGCQFYVTTVGAKWLDGKHTVFGKVLEGMDTIYAIEDVKTDTDDFPVEPVVI 185          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: CYPC_YEAST (Peptidyl-prolyl cis-trans isomerase C, mitochondrial OS=Saccharomyces cerevisiae GN=CPR3 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.686e-23
Identity = 63/134 (47.01%), Postives = 77/134 (57.46%), Query Frame = 3
Query:  102 TSMGSFTVELYYKHSPRTCRNFAEL--SRRGY-YNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSVQT 491
            T +G    ELY    P+T  NF  L    +G+ Y    FHRII DF++Q             SIYG  F DE   + KH  AG+LSMANAGPNTNGSQFFIT  P   LDGKH +FG V +GM+++K + S  T
Sbjct:   33 TKIGRIEFELYDNVVPKTAENFRALCTGEKGWGYKGVPFHRIIPDFMIQGGDTDLTNGFGGKSIYGSKFADENFVK-KHDKAGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVTKGMDIVKAIESYGT 165          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: CYPB_YEAST (Peptidyl-prolyl cis-trans isomerase B OS=Saccharomyces cerevisiae GN=CPR2 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.686e-23
Identity = 67/152 (44.08%), Postives = 88/152 (57.89%), Query Frame = 3
Query:   99 ETSMGSFTVELYYKHSPRTCRNFAELS-----RRGYYNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTP-ASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILR 533
            E  +G   + LY K  P+T +NF +LS     ++G+   S FHR+I +F+VQ             SIYG  F DE    LKH   G LSMAN G +TNGSQFFIT T  AS LDGKH +FG+V  GM+V+  +  V  D +D+P+  VKI +
Sbjct:   46 EEKVGRIVIGLYGKVCPKTAKNFYKLSTTTNSKKGFIG-STFHRVIPNFMVQGGDFTDGTGVGGKSIYGDTFPDE-NFTLKHDRKGRLSMANRGKDTNGSQFFITTTEEASWLDGKHVVFGQVVDGMDVVNYIQHVSRDANDKPLEAVKIAK 195          
BLAST of FC931608 vs. ExPASy Swiss-Prot
Match: PPIB_ASPOR (Peptidyl-prolyl cis-trans isomerase B OS=Aspergillus oryzae GN=cpr2 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.427e-23
Identity = 61/147 (41.50%), Postives = 87/147 (59.18%), Query Frame = 3
Query:  108 MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLTPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRT 536
            +G   + LY K  P+T  NF  L+   +G+ Y  S FHR+IK+F++Q             SIYG  F+DE   +++HT  G+LSMANAG +TNGSQFFIT      LDG+H +FG V  G EV++ + +V     D+P   VKI+++
Sbjct:   33 LGRVVLGLYGKTVPKTAENFRALATGEKGFGYEGSTFHRVIKEFMIQGGDFTRGDGTGGKSIYGEKFKDE-NFKIRHTKKGLLSMANAGKDTNGSQFFITTVATPWLDGRHVVFGEVLEGYEVVEAIENVPKVPGDKPQQVVKIVKS 178          
The following BLAST results are available for this feature:
BLAST of FC931608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 258
Match NameE-valueIdentityDescription
PPIH_USTMA3.334e-2343.05Peptidyl-prolyl cis-trans isomerase H (Fragment) O... [more]
CYP11_CAEEL3.334e-2341.96Peptidyl-prolyl cis-trans isomerase 11 OS=Caenorha... [more]
PPIA_BLAGE4.354e-2344.81Peptidyl-prolyl cis-trans isomerase OS=Blattella g... [more]
PPIH_ASPOR5.686e-2341.56Peptidyl-prolyl cis-trans isomerase H OS=Aspergill... [more]
PPID_YARLI5.686e-2339.39Peptidyl-prolyl cis-trans isomerase D OS=Yarrowia ... [more]
PPID_RHIOR5.686e-2343.42Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus ... [more]
CYPR_DROME5.686e-2341.78Peptidyl-prolyl cis-trans isomerase, rhodopsin-spe... [more]
CYPC_YEAST5.686e-2347.01Peptidyl-prolyl cis-trans isomerase C, mitochondri... [more]
CYPB_YEAST5.686e-2344.08Peptidyl-prolyl cis-trans isomerase B OS=Saccharom... [more]
PPIB_ASPOR7.427e-2341.50Peptidyl-prolyl cis-trans isomerase B OS=Aspergill... [more]

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Properties
Property NameValue
Genbank descriptionC34107A08EF PostHarvP1 Citrus clementina cDNA clone C34107A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931608 ID=FC931608; Name=FC931608; organism=Citrus clementina; type=EST; length=705bp
GATCGTTGTTTCGTTTCTGAGTTTCTGATAGTGTTGTGGTCTTGAAAGCA
ACAATAAAGATGCTGGCAAGTGACGACGGTCCGCCGGAGGTCACTTTAGA
AACTTCCATGGGCTCTTTCACCGTCGAGCTTTACTACAAGCACTCTCCAA
GAACTTGCAGGAACTTTGCTGAACTATCTCGCAGAGGTTATTATAATAAC
AGCAAATTCCACAGAATTATTAAGGATTTTATAGTTCAAGGTGGAGATCC
TACCGGGACTGGAAGGGGAGGAGATTCCATATATGGCCATGTTTTCGAAG
ATGAAATAAAACCAGAATTAAAGCATACTGGAGCTGGGATCTTGTCCATG
GCAAATGCTGGTCCAAATACAAATGGAAGCCAGTTCTTTATCACTTTGAC
GCCTGCTTCACATCTGGATGGAAAGCACACTATATTTGGAAGAGTATGCA
GAGGAATGGAAGTGATCAAAAGGCTTGGCAGTGTCCAAACTGATAAAGAT
GACAGGCCCATCCATGACGTGAAGATACTACGGACTTCTGTTAAGGACTG
ATGCCATGAAACGGTTATGGAAACCAACGTTTCCACATGATTTTGGGTGC
ACTAGAGCCAGTGTTCAAAAATCTGATTCTGAAAATTTCTAACGTCTGAT
TTTGGATGCACTGTACTTTGGTATTTTATTGAACAGAAGGCAAATATGGA
TCATT
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