FC931612

Overview
NameFC931612
Unique NameFC931612
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length254
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15300 contig Ccv1_Contig15300:1..254. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931612 vs. ExPASy Swiss-Prot
Match: HSP7C_PONAB (Heat shock cognate 71 kDa protein OS=Pongo abelii GN=HSPA8 PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 2.446e-22
Identity = 48/83 (57.83%), Postives = 68/83 (81.93%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAENYKAEDEEHKKKVEAKNALENYAYXMRKHCQDEKIGSKLDPADKKKIEDAIDQ 250
            +TG++NKITITNDKGRLSK++IE+MVQEAE YKAEDE+ + KV +KN+LE+YA+ M+   +DEK+  K++  DK+KI D  ++
Sbjct:  494 STGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNE 576          
BLAST of FC931612 vs. ExPASy Swiss-Prot
Match: HSP7C_MOUSE (Heat shock cognate 71 kDa protein OS=Mus musculus GN=Hspa8 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.446e-22
Identity = 48/83 (57.83%), Postives = 68/83 (81.93%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAENYKAEDEEHKKKVEAKNALENYAYXMRKHCQDEKIGSKLDPADKKKIEDAIDQ 250
            +TG++NKITITNDKGRLSK++IE+MVQEAE YKAEDE+ + KV +KN+LE+YA+ M+   +DEK+  K++  DK+KI D  ++
Sbjct:  494 STGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNE 576          
BLAST of FC931612 vs. ExPASy Swiss-Prot
Match: HSP7C_HUMAN (Heat shock cognate 71 kDa protein OS=Homo sapiens GN=HSPA8 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.446e-22
Identity = 48/83 (57.83%), Postives = 68/83 (81.93%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAENYKAEDEEHKKKVEAKNALENYAYXMRKHCQDEKIGSKLDPADKKKIEDAIDQ 250
            +TG++NKITITNDKGRLSK++IE+MVQEAE YKAEDE+ + KV +KN+LE+YA+ M+   +DEK+  K++  DK+KI D  ++
Sbjct:  494 STGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNE 576          
BLAST of FC931612 vs. ExPASy Swiss-Prot
Match: HSP7C_HORSE (Heat shock cognate 71 kDa protein OS=Equus caballus GN=HSPA8 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.446e-22
Identity = 48/83 (57.83%), Postives = 68/83 (81.93%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAENYKAEDEEHKKKVEAKNALENYAYXMRKHCQDEKIGSKLDPADKKKIEDAIDQ 250
            +TG++NKITITNDKGRLSK++IE+MVQEAE YKAEDE+ + KV +KN+LE+YA+ M+   +DEK+  K++  DK+KI D  ++
Sbjct:  494 STGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNE 576          
BLAST of FC931612 vs. ExPASy Swiss-Prot
Match: HSP7C_CRIGR (Heat shock cognate 71 kDa protein OS=Cricetulus griseus GN=HSPA8 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.446e-22
Identity = 48/83 (57.83%), Postives = 68/83 (81.93%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAENYKAEDEEHKKKVEAKNALENYAYXMRKHCQDEKIGSKLDPADKKKIEDAIDQ 250
            +TG++NKITITNDKGRLSK++IE+MVQEAE YKAEDE+ + KV +KN+LE+YA+ M+   +DEK+  K++  DK+KI D  ++
Sbjct:  494 STGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNE 576          
BLAST of FC931612 vs. ExPASy Swiss-Prot
Match: HSP7C_BOVIN (Heat shock cognate 71 kDa protein OS=Bos taurus GN=HSPA8 PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 2.446e-22
Identity = 48/83 (57.83%), Postives = 68/83 (81.93%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAENYKAEDEEHKKKVEAKNALENYAYXMRKHCQDEKIGSKLDPADKKKIEDAIDQ 250
            +TG++NKITITNDKGRLSK++IE+MVQEAE YKAEDE+ + KV +KN+LE+YA+ M+   +DEK+  K++  DK+KI D  ++
Sbjct:  494 STGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNE 576          
BLAST of FC931612 vs. ExPASy Swiss-Prot
Match: HSP71_CERAE (Heat shock 70 kDa protein 1 OS=Cercopithecus aethiops GN=HSPA1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.194e-22
Identity = 50/79 (63.29%), Postives = 63/79 (79.75%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAENYKAEDEEHKKKVEAKNALENYAYXMRKHCQDEKIGSKLDPADKKKIED 238
            +TG+ NKITITNDKGRLSK+EIE+MVQEAE YKAEDE  +++V AKNALE+YA  M+   +DE +  K+  ADKKK+ D
Sbjct:  491 STGKANKITITNDKGRLSKEEIERMVQEAEKYKAEDEVQRERVSAKNALESYALNMKSAVEDEGLKGKISEADKKKVLD 569          
BLAST of FC931612 vs. ExPASy Swiss-Prot
Match: HS71L_MOUSE (Heat shock 70 kDa protein 1-like OS=Mus musculus GN=Hspa1l PE=2 SV=4)

HSP 1 Score: 103.605 bits (257), Expect = 3.194e-22
Identity = 50/83 (60.24%), Postives = 65/83 (78.31%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAENYKAEDEEHKKKVEAKNALENYAYXMRKHCQDEKIGSKLDPADKKKIEDAIDQ 250
            +TG+ NKITITNDKGRLSK+EIE+MVQEAE YKAEDE  ++K+ AKNALE+YA+ M+    DE +  K+  +DKKKI D  ++
Sbjct:  496 STGKANKITITNDKGRLSKEEIERMVQEAERYKAEDEGQREKIAAKNALESYAFNMKSAVGDEGLKDKISESDKKKILDKCNE 578          
BLAST of FC931612 vs. ExPASy Swiss-Prot
Match: HS71A_PIG (Heat shock 70 kDa protein 1A OS=Sus scrofa GN=HSPA1A PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.194e-22
Identity = 50/79 (63.29%), Postives = 64/79 (81.01%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAENYKAEDEEHKKKVEAKNALENYAYXMRKHCQDEKIGSKLDPADKKKIED 238
            +TG+ NKITITNDKGRLSK+EIE+MVQEAE YKAEDE  +++V AKNALE+YA+ M+   +DE +  K+  ADKKK+ D
Sbjct:  494 STGKANKITITNDKGRLSKEEIERMVQEAEKYKAEDEIQRERVGAKNALESYAFNMKSVVEDEGLKGKISEADKKKVLD 572          
BLAST of FC931612 vs. ExPASy Swiss-Prot
Match: HSP7C_ORYLA (Heat shock cognate 71 kDa protein OS=Oryzias latipes GN=hsc70 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.172e-22
Identity = 48/83 (57.83%), Postives = 65/83 (78.31%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAENYKAEDEEHKKKVEAKNALENYAYXMRKHCQDEKIGSKLDPADKKKIEDAIDQ 250
            +TG++NKITITNDKGRLSK++IE+MVQEAE YKAED+  + KV AKN LE+YA+ M+   +DEK+  K+   DK+KI D  ++
Sbjct:  492 STGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDDVQRDKVSAKNGLESYAFNMKSTVEDEKLAGKISDEDKQKILDKCNE 574          
The following BLAST results are available for this feature:
BLAST of FC931612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
HSP7C_PONAB2.446e-2257.83Heat shock cognate 71 kDa protein OS=Pongo abelii ... [more]
HSP7C_MOUSE2.446e-2257.83Heat shock cognate 71 kDa protein OS=Mus musculus ... [more]
HSP7C_HUMAN2.446e-2257.83Heat shock cognate 71 kDa protein OS=Homo sapiens ... [more]
HSP7C_HORSE2.446e-2257.83Heat shock cognate 71 kDa protein OS=Equus caballu... [more]
HSP7C_CRIGR2.446e-2257.83Heat shock cognate 71 kDa protein OS=Cricetulus gr... [more]
HSP7C_BOVIN2.446e-2257.83Heat shock cognate 71 kDa protein OS=Bos taurus GN... [more]
HSP71_CERAE3.194e-2263.29Heat shock 70 kDa protein 1 OS=Cercopithecus aethi... [more]
HS71L_MOUSE3.194e-2260.24Heat shock 70 kDa protein 1-like OS=Mus musculus G... [more]
HS71A_PIG3.194e-2263.29Heat shock 70 kDa protein 1A OS=Sus scrofa GN=HSPA... [more]
HSP7C_ORYLA4.172e-2257.83Heat shock cognate 71 kDa protein OS=Oryzias latip... [more]

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Properties
Property NameValue
Genbank descriptionC34107A12EF PostHarvP1 Citrus clementina cDNA clone C34107A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931612 ID=FC931612; Name=FC931612; organism=Citrus clementina; type=EST; length=254bp
GACAACGGGCCAAAAGAACAAGATCACAATCACCAACGATAAGGGTAGAT
TGTCAAAGGATGAAATTGAGAAGATGGTTCAAGAGGCCGAGAACTACAAG
GCTGAAGACGAGGAGCACAAGAAGAAGGTCGAGGCCAAGAATGCCTTGGA
AAACTATGCCTACNATATGAGGAAACACTGTCAGGACGAGAAGATCGGCT
CCAAACTTGATCCAGCTGACAAGAAGAAGATTGAGGATGCCATTGATCAG
GCAA
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