FC931612

Overview
NameFC931612
Unique NameFC931612
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length254
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15300 contig Ccv1_Contig15300:1..254. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931612 vs. ExPASy Swiss-Prot
Match: HSP70_LEIDO (Heat shock 70 kDa protein OS=Leishmania donovani GN=HSP70 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.100e-20
Identity = 45/81 (55.56%), Postives = 58/81 (71.60%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAENYKAEDEEHKKKVEAKNALENYAYXMRKHCQDEKIGSKLDPADKKKIEDAID 247
            TG++N+ITITNDKGRLSKDEIE+MV +A  Y+A+D   + +VEAKN LENYAY M+    D  +  KLD +DK  +   ID
Sbjct:  497 TGKRNQITITNDKGRLSKDEIERMVNDAMKYEADDRAQRDRVEAKNGLENYAYSMKNTLGDSNVSGKLDDSDKATLNKEID 577          
BLAST of FC931612 vs. ExPASy Swiss-Prot
Match: HSP70_PLEWA (Heat shock 70 kDa protein OS=Pleurodeles waltlii GN=HSP70 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.660e-20
Identity = 45/83 (54.22%), Postives = 63/83 (75.90%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAENYKAEDEEHKKKVEAKNALENYAYXMRKHCQDEKIGSKLDPADKKKIEDAIDQ 250
            ++G++NKITITNDKGRLSK+EIE+MVQEAE YKA+DE  ++KV AKN LE+ A+ M+   + + +  K+   D+KKI D  +Q
Sbjct:  496 SSGKQNKITITNDKGRLSKEEIERMVQEAERYKADDEAQREKVSAKNTLESIAFNMKSTVEGDNLKDKISEDDRKKIVDKCNQ 578          
BLAST of FC931612 vs. ExPASy Swiss-Prot
Match: HSP7C_CAEBR (Heat shock 70 kDa protein C OS=Caenorhabditis briggsae GN=hsp-3 PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 8.698e-20
Identity = 45/84 (53.57%), Postives = 64/84 (76.19%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAENYKAEDEEHKKKVEAKNALENYAYXMRKHCQD-EKIGSKLDPADKKKIEDAIDQA 253
            TG KNKITITND+ RLS ++IE+M+ +AE +  +D++ K+K EA+N LE+YAY ++    D EK+G KLD  DKK IE+A+D+A
Sbjct:  523 TGNKNKITITNDQNRLSPEDIERMINDAEKFAEDDKKVKEKAEARNELESYAYSLKNQIGDKEKLGGKLDEDDKKTIEEAVDEA 606          
BLAST of FC931612 vs. ExPASy Swiss-Prot
Match: HSP71_SCHPO (Probable heat shock protein ssa1 OS=Schizosaccharomyces pombe GN=ssa1 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 8.698e-20
Identity = 44/82 (53.66%), Postives = 60/82 (73.17%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAENYKAEDEEHKKKVEAKNALENYAYXMRKHCQDEKIGSKLDPADKKKIEDAIDQ 250
            TG+  KITITNDKGRLSK+EI++MV EAE YKAEDE    +++AKN LE+YAY +R    D  +  K+D +DK+ I+ A+ +
Sbjct:  493 TGKTQKITITNDKGRLSKEEIDRMVSEAEKYKAEDEAETSRIQAKNHLESYAYSLRNSLDDPNLKDKVDASDKEAIDKAVKE 574          
BLAST of FC931612 vs. ExPASy Swiss-Prot
Match: HSP70_LEIAM (Heat shock 70 kDa protein OS=Leishmania amazonensis GN=HSP70 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.136e-19
Identity = 45/83 (54.22%), Postives = 58/83 (69.88%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAENYKAEDEEHKKKVEAKNALENYAYXMRKHCQDEKIGSKLDPADKKKIEDAIDQA 253
            TG++N+ITITNDKGRLSKDEIE+MV +A  Y+A+D+    +VEAKN LENYAY M+    D  +  KLD  DK  +   I+ A
Sbjct:  498 TGKRNQITITNDKGRLSKDEIERMVNDAMKYEADDKAQADRVEAKNGLENYAYSMKNTLGDSNVSGKLDDTDKSTLNKEIEAA 580          
BLAST of FC931612 vs. ExPASy Swiss-Prot
Match: HSP7C_CAEEL (Heat shock 70 kDa protein C OS=Caenorhabditis elegans GN=hsp-3 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 1.484e-19
Identity = 44/84 (52.38%), Postives = 64/84 (76.19%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAENYKAEDEEHKKKVEAKNALENYAYXMRKHCQD-EKIGSKLDPADKKKIEDAIDQA 253
            TG KNKITITND+ RLS ++IE+M+ +AE +  +D++ K K EA+N LE+YAY ++   +D EK+G KLD  DKK IE+A+++A
Sbjct:  523 TGNKNKITITNDQNRLSPEDIERMINDAEKFAEDDKKVKDKAEARNELESYAYNLKNQIEDKEKLGGKLDEDDKKTIEEAVEEA 606          
BLAST of FC931612 vs. ExPASy Swiss-Prot
Match: HSP70_TRYCR (Heat shock 70 kDa protein OS=Trypanosoma cruzi GN=HSP70 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.484e-19
Identity = 41/83 (49.40%), Postives = 63/83 (75.90%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAENYKAEDEEHKKKVEAKNALENYAYXMRKHCQDEKIGSKLDPADKKKIEDAIDQA 253
            TG++N+I +TNDKGRLS+ EIE+MV+EA  Y+AED++  ++++AKN LENYA+ M+    D  +  K++ ADKK I  A+++A
Sbjct:  498 TGKRNQIVLTNDKGRLSRAEIERMVREAAKYEAEDKDQVRQIDAKNGLENYAFSMKNAVNDPNVAGKIEEADKKTITSAVEEA 580          
BLAST of FC931612 vs. ExPASy Swiss-Prot
Match: GRP78_PICAN (78 kDa glucose-regulated protein homolog OS=Pichia angusta GN=BiP PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.484e-19
Identity = 45/84 (53.57%), Postives = 65/84 (77.38%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAENYKAEDEEHKKKVEAKNALENYAYXMRKHCQDEK-IGSKLDPADKKKIEDAIDQA 253
            TG+ N ITITNDKGRLSK+EIEK ++EAE +  +D+E ++KVE++NALENYA+ ++    DE   G+KL+  DK+ + DAI++A
Sbjct:  528 TGKSNSITITNDKGRLSKEEIEKKIEEAEKFAQQDKELREKVESRNALENYAHSLKNQANDENGFGAKLEEDDKETLLDAINEA 611          
BLAST of FC931612 vs. ExPASy Swiss-Prot
Match: HSP72_SCHPO (Probable heat shock protein ssa2 OS=Schizosaccharomyces pombe GN=ssa2 PE=1 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 1.938e-19
Identity = 43/82 (52.44%), Postives = 60/82 (73.17%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAENYKAEDEEHKKKVEAKNALENYAYXMRKHCQDEKIGSKLDPADKKKIEDAIDQ 250
            TG+  KITITNDKGRLSK+EI++MV EAE YKAEDE    +++AKN LE+YAY +R    D  +  K+D +DK+ ++ A+ +
Sbjct:  493 TGKTQKITITNDKGRLSKEEIDRMVAEAEKYKAEDEAESGRIQAKNHLESYAYSLRNSLDDPNLKDKVDASDKETVDKAVKE 574          
BLAST of FC931612 vs. ExPASy Swiss-Prot
Match: HSP70_PENCI (Heat shock 70 kDa protein (Fragment) OS=Penicillium citrinum GN=HSP70 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.938e-19
Identity = 46/82 (56.10%), Postives = 61/82 (74.39%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAENYKAEDEEHKKKVEAKNALENYAYXMRKHCQDEKIGSKLDPADKKKIEDAIDQ 250
            TG+ NKITITNDKGRLSK+EIE+M+ EAE YKAEDE    +++AKN LE+YAY ++    + K+  ++   DKKKIED I +
Sbjct:  363 TGKSNKITITNDKGRLSKEEIERMLAEAEKYKAEDEAEASRIQAKNGLESYAYSLKNTITEGKL--QMSDDDKKKIEDKISE 442          
The following BLAST results are available for this feature:
BLAST of FC931612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
HSP70_LEIDO5.100e-2055.56Heat shock 70 kDa protein OS=Leishmania donovani G... [more]
HSP70_PLEWA6.660e-2054.22Heat shock 70 kDa protein OS=Pleurodeles waltlii G... [more]
HSP7C_CAEBR8.698e-2053.57Heat shock 70 kDa protein C OS=Caenorhabditis brig... [more]
HSP71_SCHPO8.698e-2053.66Probable heat shock protein ssa1 OS=Schizosaccharo... [more]
HSP70_LEIAM1.136e-1954.22Heat shock 70 kDa protein OS=Leishmania amazonensi... [more]
HSP7C_CAEEL1.484e-1952.38Heat shock 70 kDa protein C OS=Caenorhabditis eleg... [more]
HSP70_TRYCR1.484e-1949.40Heat shock 70 kDa protein OS=Trypanosoma cruzi GN=... [more]
GRP78_PICAN1.484e-1953.5778 kDa glucose-regulated protein homolog OS=Pichia... [more]
HSP72_SCHPO1.938e-1952.44Probable heat shock protein ssa2 OS=Schizosaccharo... [more]
HSP70_PENCI1.938e-1956.10Heat shock 70 kDa protein (Fragment) OS=Penicilliu... [more]

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Properties
Property NameValue
Genbank descriptionC34107A12EF PostHarvP1 Citrus clementina cDNA clone C34107A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931612 ID=FC931612; Name=FC931612; organism=Citrus clementina; type=EST; length=254bp
GACAACGGGCCAAAAGAACAAGATCACAATCACCAACGATAAGGGTAGAT
TGTCAAAGGATGAAATTGAGAAGATGGTTCAAGAGGCCGAGAACTACAAG
GCTGAAGACGAGGAGCACAAGAAGAAGGTCGAGGCCAAGAATGCCTTGGA
AAACTATGCCTACNATATGAGGAAACACTGTCAGGACGAGAAGATCGGCT
CCAAACTTGATCCAGCTGACAAGAAGAAGATTGAGGATGCCATTGATCAG
GCAA
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